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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0157500 |
| Transcript ID | LotjaGi6g1v0157500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2H2-like zinc finger protein; TAIR: AT5G40710.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q8SUH6|ZA15_ENCCU Zinc finger C2H2 protein ECU10_0150; TrEMBL-Plants: tr|A0A072UVJ3|A0A072UVJ3_MEDTR Zinc finger protein; Found in the gene: LotjaGi6g1v0157500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:43867224..43872647) extracted from Lotus japonicus Gifu genome v1.2.
GCAATTTCTGATAGGCTAAACTATCGTGGTTTCCACAGTGGCTTTCTGCCGAGTCTGCGCGAGCATCTTCATTCCTCTCT CGCTGTAGTGCAAGTTTCAACTCTTCTGGTTCGGAAATGGTTCATGTTTCTTCCGAAGGAAACAAGAATCCACAAGAAGA ATGAAGAAGATGTGGATTTTGCACAATCGGTTCGTTGTGTTCTGCATTGTTTGTTACCTCTGTTCTTCTCTGCAGCTTAC GAGGGTTTCTTCATCCTCACCTGCTCCACACAGTGACCATGTAATTATGTGAATACAAAGCTGTACTTTTATGCTTTTTT TTCAATTTTTTCGAATTATTGAAGATGCCCACTTCGTAGTTTACTGAATTTAATCGTGGGCTGTTTGGATTTTATGAATC TGGATCATAATAGATTGGTGTAGTTTCAGGATTACACTAGTTTAAGGATTTTTTGTTCATTTCCTGGATAAGTCAATAGC TTAGGTGATTTTATATTTGCATAGTGAGAATTGAGAATTGCATGATGTGTGATTCTTGTTTTTTAGCTACCTCTTTATTT TGTTTACTGAAGGTTTCATATAGTTTCCATTGTCTGTTTGCATTGCATGAATTTGGATTACTATAGAATGGAAGTTCAAT TGTGCGAGGACTTGGTTCGTTGTCCGGACTCCGGAGCAATCAATCAATATCTTATTGTTTGATTTTTTCTACTTGAGATT AATGAGAATTTCATGCTGTATTTCAATTCTTATTATGGAGCTACTTCCTTTAATTTAATTATTAATCTGCATGTTTCGCA ATGGATCACCACGCACGACTAATAACGTTTTAAATCATTTCTGTGTGCCAATTATTTGGAATCATCTATAGCTAAGCGAG TTCCTGGTTTTGTTTTGTTTATTTTTGTTCCAAACTGATGCATGTTTTGTCTCAAATTTTCATGACACTGTAAAATTAAA CTTTCTGTTGTTTCTTGTTACAGGATCATATAAATTCAGATGTTGGAAGGTAAGTCAGCTTTGCACTAGGTGAACATCAT TTTTAGCTTACATTTCAATGTTTCTTCACTTCCCAGTGGTCCTATTTTCATTATATATAACTTAAATGGTGTGCCTCTCT TGCATGATACACCCCCATTATTTATTTCATGTTTAGTTCTTTTTTTTTCCCCTTCTTTCACTTTATTTTTTTTCAGCTCT ATGTGCCTTTCTCGCTTCTTGTTTCTAGGAATTGTTCTGGCTAATATATAATGTCACTGTTCAGAACACTGCAGCAGGAG CAAGATGGTAATCATCAAATACATTGCTCAAGAGAAAGGAGTAGAGTAGCTTGGAAAATCATTCAAGAGGTACCGGAATA TAACCAAATAAGTGTCTCTCTTGATTCTACTATGTCACCTACTTGCATCAATATTATATAACTGATAGTGTGCCTTCTCT TGATAAATGATTCTTGCTGCAGTATTTGATGCCTTTCGTGGAGAAAGAAAAATATCATATCTCAAAAAGGTGTAGGCTTC ACCCTGATAATGATATATACAGAGATCAGGAAGACCATAAGTCTCATATAGATATAAATGAATGGCAGTGTGGGTTCTGT AAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTCGACAACAGACACTCCAATTTACTTAATTCGGTATTATG CTTCTTTTCAATACAATTATTGGTTTTTTCTTTCATTGATGGAAAAATGTCTATTATATAGGAAATAAAAGTGGACAACA TATTGTTTAAAAGGTACAAGTTGGAGTAGATGATATAGTAAGAATTCTGTGAGTTACAACATAGCTAGTTTATGTGAGCC CACAGCCCAAAATTACTAAAGTTTATATAAGGAGACATGCTAAAGTTTATGCGAGGAGGCATAACAGCATGAATACTTGA TGCACATGATCAGGCTGTGAGGCGTGGTTCTGATTACTAACTGCCGAGTTGGCAGTTGCAGTGAGGAGTGTGTGTGGGGT GGTAAGTGAGAGAGAGTATAAGCATGGGAAGTGAGCTGAGGCTGAGATAGGTTGGAAAATGGAATCGGAACATTAGTAGA GTTTAGGCCTCTTGAAGTGCCTTAGAGATCCTTTCTGCTCTAATAATGTAAATAGTTCTATACTCAGGACTTGAACTTCT TAATAAGGTCTGATACCGTATAATACAATACATTTCTTCTCTGTTTTCTTGCTAACTTTCTAGTACCTATCATTATTGAA TATCGTATTCTGTGACATCATTGTCGTCATTTCATGAGGAATGTGGGGTTGTAAGAAGTGCTGCCTATGCTCCATTGCTG CTAAATATTTCTTTGAGAAGGTACAGCTGGACAAGCTGTGGAAGATGCTTGTCTCAGGCTTGTTTGAGTTATAGCGGTGG CCAAGAATGACATTTAAAAACATACTTAATTTATAGCATGGACAAAATAAAATGCGGAAGCAAGTTTGTGAGAGGGTGCT TTGATTTGGGTGGTGCTTTGATCTTTTATCTTAGAAGCCCTATAGGAAATTTAGGAAAATATACTTGTTGGAGTGATTTG GGTGGTGCTTTGATCTTTTATCTTCCCTAAACATAGCTGATAGTTGACAGTATAGGATATTTTATGGCACTTCTATATTG CACTAAGACATTAAAGTTAACTTTCATAATTTTCAAATTATTTACTGAAATATAAGAATTTTGGTAGCTTTCTCTGCTCA GTCTGTCATGCCGTTGCATTAATAACTGAAATGAGATACTTGTGCTCAATCCAGAGTGAAAGCCGGTGCTTAGCCGACGT ATGTGGTGCACTGCACTGTGACCTTGAAATAAATTCTGGGTCAAAAAAATCAAAGTGCAACCCTGCTGCCGCTGCAAGAA ATAAACATCTGTGTGAGGTGTGCTTTTAATATATCTATTCATTTTGTTTTGACCAAAATAATTTTCTGTTCTAATTTAGC TCTTTTTTATAGAGCTTAGCTGATAGTTGTTTTCCAGTTAATGAGGGCCCCGCAGCAAGCCGGCTTCATGGTATACAATA TTCTTCTTCATTCTTGCAAAAGATTGTGCATTTATGGTAGATTCTGGTACTGTTTTCTTACATTAACAATTTTACAGAAT TCTTTTTGCACCAATTCTGTGATGCACACAGCTGTACTCCAAGTGGGAAACCTTTCTCCAGAGGGCGCAGGGTAATTTGA CTGAAACCTCTGTTTCAATTGTTTTTTTCGTCCATCATTTTTTAGTTTTGTGTTCGCTTTTATCAGTGTTTATGATAGTT GTACAACTTCTACATGTAAATTTGTTTTGAGCTATATTCAATTTCCAGAAATCTTTATTTGTGGTTAAAGATTCAGAAGT CCTGAGAACTGAAATTTGGTAAATTATATAGCTAATGGGAAAGTAAATTTGCAAAAATTCCACTTTCTTCTTATAAGGGA ACTTAGGATATAGTACTCTCACAGAAAGACTCAGAGAAGAGAATAAAGGCCAGCGTGATTTATGGAAGTTTATAATGGAA GTGTATATGTTGTAGAGCTACTGCTATTACATGCTGACCTGTGAGGCTTATATTAGGAGAATTTTTCACTAACTGTTTTT TTTATGTGTGCAGAAGAGGACAAATGTGTTCTACATCGTGGCCTCCATTTTTCTTGTGGTGCTGCTGCTACTTTACTATC TCTACATTTACTTGTATCAAAGGTATTTATTTCAAAACTTCACGAAAAGACCATACATTAAGGAAGCCTTGCAATGGCTC AAATAACGTTTGGACTTTCATATTACAGAGGAATGAAAAGGGAAACTCAAGTGCTGAAGCGTATCTCACAAGCCAGCAGG AAGAAAAAGCCATCTTAATTGATGCTGATGGATATTTCCCTACAGAAGTTCTCAGCCTAGTTTTTTCAGAAAGTAAAAGG GGTTGCTAATGGATACACCGTACTGCACTTGAAATCCACTCTACGCCATTCTGCTATTTGCAAGTGGAAGTATGAGGAAG AAAGTGGTCGCGGACTTCAAATGAAGTGTATCTGATTTGCTAATTTGTCAGCCAATTTCTTTGTAAACACAAAGGAAGTT GCTGCATGACTGAATCCACCTTGGTTGGGTATTTGCATTTTATTGTGGATGACATCACTAACAAGAGAAATTACATGAAC CTTTGCATTGTATTTTCTTAATTTGTGTACTAGCTTGATTTGGATTGATTTGTAAACCTTTTCATATCATACATCATACA TGTGTACATTACACACGTACAGTAATCTGCTCAAAAAGGTTTTTGAGGATTTCCTTGCTATTTTATAAGTCATCATGGCT GGGTGGGTAGGGGGAATACTCTCATTTTATCCTTCATTTCAGAAATTAAAAAACAATAATGAATGTGACAAAAAACAAGT AAAAACAAAAATCTGAATGAAGCTAACAAACTTCAACTTTATTATGAGCTCACAGTTACTGAACATCTATTCCAATTATT TTGGCACTGGTGTTGGCTTTAGGAATTGTGATGTAAAGAACACCATCCTTGACCTGTGCCATGATTTTCTCAAACTCAAT CTTTTCTGGTAGGGCAATCCTATGGTTATACCTACCATAGCTATTGGCAGGCCAGTCTTCATGTTCTGGACTTAATTCTT CACTGCCATTTGCTTGACTTTCATGGTGCTGCTCTCTTGATACCTTCTCTGCCTTCACTACCAGCATGTTCTCTTCAATC CATACCTTGACATCATTCTTGCTCATACCTGGCATGTTGAATCTCATTTTGTAATCCTTCTGTCCTTCCTTTATTGCCCA AGGAATCTTTCCCTTGCTGTATTCGTCATCTCCTACAACTACCAACGGGGAAGTGCCACTGTAAACTAAGGGATTCTCTA CAATCCTATCCATTGTGTCCATCATTTGTTGCAGAGTCCTTGCTACTGGAAACTGGTTCAACAGCACTGCAAAAAGAATG CCATCTTTGTCAGTATCACTGAATTCAATGTCTGATGAAGGAATGAAAAAGATTGGGTGAGTAATTGTTCTTAAATTACC TCTAGGTGAAGCTTGTGAACCCTTCATCCTTGGCTGCAATTGCTGCTGCAGCTTTGCCCTCTGCAAGCTTGCTTCATCTC CTGCCATTGCCTTCACATTGTTGCAGAAAGTTCTCTTCCTTGTTCTTGACAGTGGTAGCAATTTGACACTGGAAAGTTTG TTCATTCTGCATGAAGTTGGAGCATAGACACTCATGTTTGCTAGAGTGTAGGTCATTTTCCTGTTTTAAAACAAGATGCT AGAGTGATGTTAATGCTATGGAAAGGCAAGGAACGTTGAGAAGTTGACGTTTGCATTGAAATTTATAGGAAGCAATGGAC ATCTCTGGATCCAGAGAAGCATAAGAAAGTGTCATCTCATGATTGTGACTTAAAAGGTTTCTAG
CDS sequence (LotjaGi6g1v0157500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGATGTGGATTTTGCACAATCGGTTCGTTGTGTTCTGCATTGTTTGTTACCTCTGTTCTTCTCTGCAGCTTAC GAGGGTTTCTTCATCCTCACCTGCTCCACACAGTGACCATGATCATATAAATTCAGATGTTGGAAGAACACTGCAGCAGG AGCAAGATGGTAATCATCAAATACATTGCTCAAGAGAAAGGAGTAGAGTAGCTTGGAAAATCATTCAAGAGTATTTGATG CCTTTCGTGGAGAAAGAAAAATATCATATCTCAAAAAGGTGTAGGCTTCACCCTGATAATGATATATACAGAGATCAGGA AGACCATAAGTCTCATATAGATATAAATGAATGGCAGTGTGGGTTCTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTG ATCAGCATTTCGACAACAGACACTCCAATTTACTTAATTCGAGTGAAAGCCGGTGCTTAGCCGACGTATGTGGTGCACTG CACTGTGACCTTGAAATAAATTCTGGGTCAAAAAAATCAAAGTGCAACCCTGCTGCCGCTGCAAGAAATAAACATCTGTG TGAGAGCTTAGCTGATAGTTGTTTTCCAGTTAATGAGGGCCCCGCAGCAAGCCGGCTTCATGAATTCTTTTTGCACCAAT TCTGTGATGCACACAGCTGTACTCCAAGTGGGAAACCTTTCTCCAGAGGGCGCAGGAAGAGGACAAATGTGTTCTACATC GTGGCCTCCATTTTTCTTGTGGTGCTGCTGCTACTTTACTATCTCTACATTTACTTGTATCAAAGAGGAATGAAAAGGGA AACTCAAGTGCTGAAGCGTATCTCACAAGCCAGCAGGAAGAAAAAGCCATCTTAA
Protein sequence (LotjaGi6g1v0157500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKMWILHNRFVVFCIVCYLCSSLQLTRVSSSSPAPHSDHDHINSDVGRTLQQEQDGNHQIHCSRERSRVAWKIIQEYLM PFVEKEKYHISKRCRLHPDNDIYRDQEDHKSHIDINEWQCGFCKKSFYEEKHLDQHFDNRHSNLLNSSESRCLADVCGAL HCDLEINSGSKKSKCNPAAAARNKHLCESLADSCFPVNEGPAASRLHEFFLHQFCDAHSCTPSGKPFSRGRRKRTNVFYI VASIFLVVLLLLYYLYIYLYQRGMKRETQVLKRISQASRKKKPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 10 | 284 | 275 | 1.3E-148 | – | |
| PANTHER | 10 | 284 | 275 | 1.3E-148 | – | |
| Phobius | 11 | 26 | 16 | - | – | |
| Phobius | 27 | 31 | 5 | - | – | |
| Phobius | 32 | 236 | 205 | - | – | |
| ProSiteProfiles | 118 | 143 | 26 | 8.974 | ||
| ProSitePatterns | 120 | 141 | 22 | - | ||
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 237 | 259 | 23 | - | – | |
| Phobius | 260 | 284 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0157500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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