Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0158100.1

Overview

Field Value
Gene ID LotjaGi6g1v0158100
Transcript ID LotjaGi6g1v0158100.1
Lotus japonicus genome version Gifu v1.2
Description Bromodomain-containing protein; TAIR: AT5G55040.1 DNA-binding bromodomain-containing protein; Swiss-Prot: sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3; TrEMBL-Plants: tr|A0A0R0F849|A0A0R0F849_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0158100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:43919322..43925950) extracted from Lotus japonicus Gifu genome v1.2.

TGAGACGAAGATTAGCATAAAAAACAACGAGAATGACGAAACACCCGGGCAGCACGCAAGCCGTCTCGGGCAACGGGCAG CACAAAACGCCGTTTTACACACTCTCTCCTCTTTTTGCCTCCTACAAAATTAAAGCAATCATTAACTGTTAGGTGCTCAC TACCTTACTCACCCGAGCCTCAGCTTCGTGTGTTCGGTGCCCAGGCTCCGAATCCGAACCTGCACCCTCGAAAAACAACA GAAGCAAACCGAAGCAGGAGAGAGAAAACCAAAGCAGTTTTAGAGAGAGAGAAGATGGTTCAGATCGCGAGGAGGAAGAA GGGACGGCCGTCGAAGGCGGATCTGGCCGCCCGTCGCGCCGCTCAGTCACCGGAAACCGCGGAGGAGCAGCATGACATCC GTCGGAGCCTCCGCCGCCGGAACGTCAGGTACAACATCATCGACTACGATGACGATTACGTCGACGAGGAGGACGAGAGG AGGCGCGAGAAGAAGAAGCTCAAGCTAATGGCCAAGCTGAACCAGGGCGAAGATGAAGAAGAAGGAGGGGAGTGGGAGGC GCGTGAGGATCACTCGCCAGAGGAGGAACAACAGAACGGCGGCGAATTCGATGTGGAAGAGAAACATAAAGAAACAGAAG CGGAAGACAGTGTGGTAATGAATTTTGTTGAAGCTGTGTTGGTGTCAGTGTTTTTCCTTTTTTCTCTCTCTAGATTTTTT CTGTCTTTGTCTGAAAGATTAACGAACTAGTCAACTGTCAAAACCATGATGTTGCACAGAATCTGATTTCTCTTTCTATA TATTATAAAATTCATAGGACACTGTCTCTGTCTCTATTTTTGTGTCACTATTTATATATATAACTCCAGTATTTTGGTTT GGTTTTGGAGGTTAATAATTGGGGTATTTGTTTCTTATGATGACAGGTAAAGGGTAGAAAAGTGGATTTGAAAGGGCTCC ACTCTGTTTCTGTTTCAGGTTTGTGTGATTTTAATGGGAGAATTTGTCATAATTTTGGTTTGGAGGTGTTCTTTTCATTA TTTCTAAAATTTGAAAAAGGGAAAAAGTTATGATAGGGTACTAGTGGTTCTGTTCATGCGTCGTCCTTTGTGTATTTCTC TCAGGTCTCAGCAACAACAAGTGTTTTTGTCAATTTTATTTATTTATTTAATTCCTTTACTTTTAGGAGCTCCTGCAAAT ACTGCATCTGGGATTCCATTGCCTGATCAGAAGACTCTGGAATTGATTCTTGACAAGCTTCAGAAGTATGGGTTCTTGTG TTTTGGTTTTGGTGTTTATGATGATATGAATGATTGCATAGCGGAGGTGTGTGTTTCTGGCACTGTTTTGTGTTTCTGAT TGTTGTGGGTCTGAATGATTACAGGAAGGACAGGTATAGCGTATTTGCAGAGCCGGTTGATCCGGAAGAGGTGTGTGGAA TTTTCTTAATCTTGCTTTTGGAAGACACCACCTGAGTTGGAAGTTCAAATTCTGTTTTGACCATGCAGCTTCCTGATTAT CATGACGTGATTGAGCATCCCATGGACTTCACCACCCTGAGGAAGAAGTTGGCAAATGGATCTTATTCTACATTGGAACA ATTTGAGGTGCACAAACTTGTCTTTGCTGTTGATGATTGGTAGAGTTTTATTTTTGTTTGAGATTTTGATAGCTTTGCAA TTTGTCACTGGAGTTGGATGTTGGCTGTTGGCTGTGTTCTACTGAGATATTATTTATTTCTAACTTCTAAGTATTTGAAC TTGTTGATACTTATATTGCTTGAAGGACTTGAGAGCTGAGACTCAAATTTAGGTGTAACTTACTCTGTCTTTCCGTAAAT GGATTCAAACTAGGATGACTGTTTTCAATGATGTATCAATAAAAATGAGGATTGTTAGCAATTGTCGGCCACATATAGTT AGTACTTTGCAATTTGCATGTAAACAAATCATTTTGAATTACTAATTTCTCAATTTATTCAGCATTTTGTCAAGTTTGAG CCAGTCTTTCTGTAGTGTTACTTACAGGTGGTCATTGGATCATTTTGTATTAGTTGGAGGCAACTATAGGCAGTATATGT GGTATATTTTAGCATTTATCTGTCGATGGCTCGATGCATCATCTCATGTTTTTTTGCATCTCATGTTTTTTGTGTCATTA AAATGGAGTCTGTCAGATTTTTTCTAATAAGTGATGAAATGGCACGCTTCACTGTAGTTGTTTATGTGCATTTGAGGGTT TTGATGAGGAAAATCAAGAGCAGCATTATATGAATTGAATTAATGTGATTTAGTATGTTCTATGATTGTGATTTTTACCC TAAAGATACATGTTAGTCCACCTGCTGTTGATGTGTAAGTAAACTACAAAGATCGATATTAACCTAGAAGGTGGAAGACA CTTTCTTCATTTCGCATTTGACTGTAAATTGGCGTTGAATTGTGATACTAAAACTCGAACTGCAGTTTAACTTCTAGGAT GTAGAACCTTGAACATTTTATCCTCTTGTTGTGATCTTGCTTAAATTTTCTTGAGCATGAGTTCCGTAGACTTTTTTTAA AAGATTTCTGATTGTCATTGACAGCATATTTTTCTATTTGTTGTTTTCTTTGTGTAGCCATCCATATATATACCACTCAT AACTCAAAAAGTATAAAATGCATAAATAATGTGTATCGCTTTCCTGTTCTTCTTGTGTGTTATTCTGGTGTTAATGCCTG AAAGGATATGGGATAGAATAGATCTTGGGTTTAAAATATTGATTCCCTAGGAGATCAGACGCAGCAGAGGCAGTGCCACT GCCCCAGTGGGATGCCATATGCCAATCTTATTTCTAGTTAGATTAGATTCACAAAAAATGTGTATTTGAAGATTTCCCTG AGTGTACTAATGTGTCATGGTTTCTTGCATGCTGTTTACTACTCAAAGGTGGACCTTTTCTCTAGAGGAAAAAGAGAGGC TGGGGAAGTAGTTGATTTTTCTTCCATCTTTAACTAGTGTCGGTTTTTTTCATACTGAAAATTATGTTTTTTTCGATTAA TTGCTATTATGAGGCATGATTTTCAAGGTGTGTGAGAATGGACTTAGTTCTCTACTAAGAGATCCCTCTATTGCATGAAA ATTCTTAATTTTGTTTTCTCTATCATCTAAATCTTTCTTTTTGAAAAAAAAAAGTTGTGCATTAATATTGTGTTCCTGAT TGAATAAAACTTGCAAGAGAAATTTTTTGCTGCAATATTACACTGATTTGTGAATGGAATTGTTGAATGCAGAGTGATGT TTATTTAATTAGCTCAAATGCAATGCAATACAATGCACCAGAGACTGTATACTACAAACAGGTATAAAGCTCAATGCTTC CTTGTGTTCCCCAACCATCAAATGTGGGATTACTAACTAACCCGCTTGCTGTGCTTACGTGTTTACCCCTATATTTGTTA CAGGCGCGGTCAATACAAGAACTAGCGCAGAAGAAGTTTGAGAAGTTAAGGATTGACTCTGAATGCTCTCAGATTGAGCT GAAGTCGGAGCAAAACATGCGACCTAATTCTCTGGTTAAGAAGCTAGTAAAGAAGCCACTGGGTTGTGCTTCACAGGAAC CTGTTGGCTCTGATTTCTCCTCAGGGGCCACTCTTGCGACTATTGGAGATGTGCAGCCAATTTTTCATCCAATGCAACAT GTTAGCTATGGGAGGTCTGGCAACTTTGATGGTATCATAGAGGGGAATACTTTCTTCATCGATGCAAATCAAGAGAAAGC TGAGGACGTTTTGTCAGGTATATCAGATATGAGATAAGGGACCTTGCTGTAATCTGCCTCTCCTGTAAGATACAAATCTC AAGGTCTAGTTATTACAGTTTAACTGTACTGCCTTACTGTTTCAGGGAAGGGCCTGCTCTCTAAATTGGGAAGGAAGTCC TTTGTGCTTGATGACAATCGTCGTGCATCTTATAATATGTCTATGCAACCAATTACTAGATCAGATTCAGTATTTATGTC CTTTGAGAGTGGAATGAAGCAGCTGGTTACTGTATGTATCCAAGGAATGAATTTAATTCATGAATGATTGGCTTTCTTAT GCTTATATTGCTATAGTAGTTTAATTTGTTGTTTTTGCATTCAGGTTGGGCTTCATGCCGAATATTCTTATGCTAGGAGT TTGGCTCGTTTTAGTGCTTCTCTAGGACCCATTGCTTGGAAAATTGCTTCCCACAGGATTCAACAGGTACTGCCAGCTGG CTCTAAATTTGGTCGTGGCTGGGTTGGAGAGTTTGAACAGCTTCCAACCCCAAATTTTGTGCACCATAATGATAATGATG TTCGAAAAGAAACTAGTTTGGTTGCGAAGTTGCATTCCCCTGCTGAACTTCCGAAGTGTGACAAAAACTGTAAGAGTGTG GAGTCCACCATTGAACATCCTGTTAATGGACAGATGCTTGAGGGAAAACATCCGGCACTTGGTCCTACTAGTGGGCTTGC ACCGGGAGGAAATCCTGTTATGTTTGGGTCTGTAGGAGTTAGACCCAATGCTCCTGTAAACCCTCTAAATCAGCAGCAGA ATGTCCAATCCAGGAACTTTGGAAAGTTTGAGAATAATAGTTTGGACAAAGTGGAGTCGAATTCTGTACCCTCAATTAAC CAGAATAATTCCAGTTTGGTTACAAACTTTGCATGTAACATTCCTACAGCTAATGCTCCTACTGAAGATTCTAAGCCCAA AGAGATGGTGTCAGGGAGCATGAATGCTTTGCCATCTACGCCTTTCAAGCAGCCAGATACTAATGGAGTTGTTGGTGGAG AGTTGCATAATGGAAAAGTCACCAATAGTTTGAATAGACAGGTGACTGGTCCATCATCTGAAACTATATCAAGCCAAACA GGAAGAGCTACTCGTTTTTCTGTTCATGGGCAGGACCAGGGTCTCAGTAACCCAGTCCAGTCGATGAGAATGTTCACTGA AAAGGCTCAAAAGCAGCAGACTTCTAACCATTCAGCAGTTGATACTTCACCAATGACATCATCAACTCCATCTGGACAAA GAGATGACTCGAGCAATGCTTCATCAGAAGCTGCTCGTGGGTGGACGTCTGTAGCGGTGGGAGGGTTCAAACAAGAACCT GACCATTCTAGTTCACCCAAGAATCAGATTTCTGCAGATTCTTTGAAAAACCAAACTAGGGAGTTCCATCAGCATCTTTC ACGAAATCGGGGGGAGTTTTCTTCTGGTGGAATGTCTGTCCAGTATGATAAGAACAACTTCCCATTTCAAGCCTTTGTAC CTCAACCTATTCAACCAGGTGCTGTTTCTCAGTTTCCAAACCAACAAATGGTTTCCCCTAAATTAGCATCTGCTGACCAA ACTAGGTTTCAAATGCAGTCCCCTTGGCGAGGTCTGAGTCCTCAAGGCCAGCAGGCCCAGCAGAAACAAGAAACCCTTCC GCCTGATTTGAATATTGGTTGTCAGTCTCCAGGGTCACCTGGGAAACAATCACAGCAACCGGACCTAGCTTTGCAACTAT GAAATGGGATTGCTGTCTTGGTGTGTGGATGTTTCTTCAGGAACTCGAATAGTCACGGAATTCGCAGCTCCTGAAATTGG ATGTTGAATTTCAATCCTAAAAGGCTCTTCATTAATATGAAACAGCCAAAAGTCTGCTTGGATTGGGATTTAGCACAATA TGTCCTGAGTCAAAATGAGTTTGCAGATGCAGAAGACTTAGGTGAATTTTACACAAAATAACTTACACCCACATACAGTC TTCTCTAGATGAGGGTGACTGACTCAGGAATCGTGTATCTGCGCGTCAATTGATTATGATCACTAGCAAGCAAAAGATAT TAATGATGTCTTTACAAATTGATGAAATTCGGTTGCCTTGGATATTTCGCTCATTTGATGACTACATCTGTATCTGAATT GGTGATAGGTGCATTACTTCTTAGTTCTGCCATCATTTTGTACATGAGATTTACATGTTATTAATTAAAAACCATTGTTT GCTTCTTGTTGACTCGAACAAACAATTCCTGGTTAAATGTCTGCCTAGCCTTTCTGAATTAAAAGTCAAGCCATCACGTT TTTAGTGTTTATTGCATTTCTTATGTAAATTGACACATAACATTGATATATCTGTTAACTTGTGATTATAATTTTCACTT TTCAGGAGGATTTGGGGCCGACAACCTATCGGTAAGCCATATCTCATCTCATTCTTTGAAAGAAATTTAGGGCTGTTTGG GGTGATTGTAGATTTTCAAGAAATTTAGGGCTGTTTGGGGTGATTGTAGATTTTCTTTTTTCGGCTTTTAAATGTAAATT TGAAAACAAAGCAGTACAAATGGTGCTCAAATGTTTTTATTTTAGCATAGTTTTAAAATTATTTAGAAAATATAGTTTTG TGATTATAGTGTTTAGTTTCGAGAACATGAAACACCTTCATCACTGTCATTATCCTAATGCATTAACCATCACCACCATT ACCGCTACTCGACAACCTTCACGGTCGCTGCCACCTCATACTCTCTCCTACTGCCAACATCTACATCTGACACCCTCTAC CATCACCACCACCACCATACTTACCAGTACCACCACTGCTAATTTTCAAGTTGTGGAAACAATATGCAG 

CDS sequence (LotjaGi6g1v0158100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGGCCGTCGAAGGCGGATCTGGCCGCCCGTCGCGCCGCTCAGTCACCGGA AACCGCGGAGGAGCAGCATGACATCCGTCGGAGCCTCCGCCGCCGGAACGTCAGGTACAACATCATCGACTACGATGACG ATTACGTCGACGAGGAGGACGAGAGGAGGCGCGAGAAGAAGAAGCTCAAGCTAATGGCCAAGCTGAACCAGGGCGAAGAT GAAGAAGAAGGAGGGGAGTGGGAGGCGCGTGAGGATCACTCGCCAGAGGAGGAACAACAGAACGGCGGCGAATTCGATGT GGAAGAGAAACATAAAGAAACAGAAGCGGAAGACAGTGTGGTAAAGGGTAGAAAAGTGGATTTGAAAGGGCTCCACTCTG TTTCTGTTTCAGGAGCTCCTGCAAATACTGCATCTGGGATTCCATTGCCTGATCAGAAGACTCTGGAATTGATTCTTGAC AAGCTTCAGAAGAAGGACAGGTATAGCGTATTTGCAGAGCCGGTTGATCCGGAAGAGCTTCCTGATTATCATGACGTGAT TGAGCATCCCATGGACTTCACCACCCTGAGGAAGAAGTTGGCAAATGGATCTTATTCTACATTGGAACAATTTGAGAGTG ATGTTTATTTAATTAGCTCAAATGCAATGCAATACAATGCACCAGAGACTGTATACTACAAACAGGCGCGGTCAATACAA GAACTAGCGCAGAAGAAGTTTGAGAAGTTAAGGATTGACTCTGAATGCTCTCAGATTGAGCTGAAGTCGGAGCAAAACAT GCGACCTAATTCTCTGGTTAAGAAGCTAGTAAAGAAGCCACTGGGTTGTGCTTCACAGGAACCTGTTGGCTCTGATTTCT CCTCAGGGGCCACTCTTGCGACTATTGGAGATGTGCAGCCAATTTTTCATCCAATGCAACATGTTAGCTATGGGAGGTCT GGCAACTTTGATGGTATCATAGAGGGGAATACTTTCTTCATCGATGCAAATCAAGAGAAAGCTGAGGACGTTTTGTCAGG GAAGGGCCTGCTCTCTAAATTGGGAAGGAAGTCCTTTGTGCTTGATGACAATCGTCGTGCATCTTATAATATGTCTATGC AACCAATTACTAGATCAGATTCAGTATTTATGTCCTTTGAGAGTGGAATGAAGCAGCTGGTTACTGTTGGGCTTCATGCC GAATATTCTTATGCTAGGAGTTTGGCTCGTTTTAGTGCTTCTCTAGGACCCATTGCTTGGAAAATTGCTTCCCACAGGAT TCAACAGGTACTGCCAGCTGGCTCTAAATTTGGTCGTGGCTGGGTTGGAGAGTTTGAACAGCTTCCAACCCCAAATTTTG TGCACCATAATGATAATGATGTTCGAAAAGAAACTAGTTTGGTTGCGAAGTTGCATTCCCCTGCTGAACTTCCGAAGTGT GACAAAAACTGTAAGAGTGTGGAGTCCACCATTGAACATCCTGTTAATGGACAGATGCTTGAGGGAAAACATCCGGCACT TGGTCCTACTAGTGGGCTTGCACCGGGAGGAAATCCTGTTATGTTTGGGTCTGTAGGAGTTAGACCCAATGCTCCTGTAA ACCCTCTAAATCAGCAGCAGAATGTCCAATCCAGGAACTTTGGAAAGTTTGAGAATAATAGTTTGGACAAAGTGGAGTCG AATTCTGTACCCTCAATTAACCAGAATAATTCCAGTTTGGTTACAAACTTTGCATGTAACATTCCTACAGCTAATGCTCC TACTGAAGATTCTAAGCCCAAAGAGATGGTGTCAGGGAGCATGAATGCTTTGCCATCTACGCCTTTCAAGCAGCCAGATA CTAATGGAGTTGTTGGTGGAGAGTTGCATAATGGAAAAGTCACCAATAGTTTGAATAGACAGGTGACTGGTCCATCATCT GAAACTATATCAAGCCAAACAGGAAGAGCTACTCGTTTTTCTGTTCATGGGCAGGACCAGGGTCTCAGTAACCCAGTCCA GTCGATGAGAATGTTCACTGAAAAGGCTCAAAAGCAGCAGACTTCTAACCATTCAGCAGTTGATACTTCACCAATGACAT CATCAACTCCATCTGGACAAAGAGATGACTCGAGCAATGCTTCATCAGAAGCTGCTCGTGGGTGGACGTCTGTAGCGGTG GGAGGGTTCAAACAAGAACCTGACCATTCTAGTTCACCCAAGAATCAGATTTCTGCAGATTCTTTGAAAAACCAAACTAG GGAGTTCCATCAGCATCTTTCACGAAATCGGGGGGAGTTTTCTTCTGGTGGAATGTCTGTCCAGTATGATAAGAACAACT TCCCATTTCAAGCCTTTGTACCTCAACCTATTCAACCAGGTGCTGTTTCTCAGTTTCCAAACCAACAAATGGTTTCCCCT AAATTAGCATCTGCTGACCAAACTAGGTTTCAAATGCAGTCCCCTTGGCGAGGTCTGAGTCCTCAAGGCCAGCAGGCCCA GCAGAAACAAGAAACCCTTCCGCCTGATTTGAATATTGGTTGTCAGTCTCCAGGGTCACCTGGGAAACAATCACAGCAAC CGGACCTAGCTTTGCAACTATGA 

Protein sequence (LotjaGi6g1v0158100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVQIARRKKGRPSKADLAARRAAQSPETAEEQHDIRRSLRRRNVRYNIIDYDDDYVDEEDERRREKKKLKLMAKLNQGED EEEGGEWEAREDHSPEEEQQNGGEFDVEEKHKETEAEDSVVKGRKVDLKGLHSVSVSGAPANTASGIPLPDQKTLELILD KLQKKDRYSVFAEPVDPEELPDYHDVIEHPMDFTTLRKKLANGSYSTLEQFESDVYLISSNAMQYNAPETVYYKQARSIQ ELAQKKFEKLRIDSECSQIELKSEQNMRPNSLVKKLVKKPLGCASQEPVGSDFSSGATLATIGDVQPIFHPMQHVSYGRS GNFDGIIEGNTFFIDANQEKAEDVLSGKGLLSKLGRKSFVLDDNRRASYNMSMQPITRSDSVFMSFESGMKQLVTVGLHA EYSYARSLARFSASLGPIAWKIASHRIQQVLPAGSKFGRGWVGEFEQLPTPNFVHHNDNDVRKETSLVAKLHSPAELPKC DKNCKSVESTIEHPVNGQMLEGKHPALGPTSGLAPGGNPVMFGSVGVRPNAPVNPLNQQQNVQSRNFGKFENNSLDKVES NSVPSINQNNSSLVTNFACNIPTANAPTEDSKPKEMVSGSMNALPSTPFKQPDTNGVVGGELHNGKVTNSLNRQVTGPSS ETISSQTGRATRFSVHGQDQGLSNPVQSMRMFTEKAQKQQTSNHSAVDTSPMTSSTPSGQRDDSSNASSEAARGWTSVAV GGFKQEPDHSSSPKNQISADSLKNQTREFHQHLSRNRGEFSSGGMSVQYDKNNFPFQAFVPQPIQPGAVSQFPNQQMVSP KLASADQTRFQMQSPWRGLSPQGQQAQQKQETLPPDLNIGCQSPGSPGKQSQQPDLALQL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 39 39 -
PANTHER 3 859 857 1.7E-168
PANTHER 3 859 857 1.7E-168
MobiDBLite 74 124 51 -
MobiDBLite 88 124 37 -
SUPERFAMILY 142 250 109 3.4E-35
SMART 144 252 109 6.9E-34
Gene3D 149 271 123 4.4E-37
CDD 151 247 97 2.51757E-33
Pfam 157 237 81 1.2E-25
ProSiteProfiles 163 233 71 20.006
PRINTS 166 179 14 6.0E-15
ProSitePatterns 169 225 57 -
PRINTS 180 196 17 6.0E-15
PRINTS 196 214 19 6.0E-15
PRINTS 214 233 20 6.0E-15
CDD 289 374 86 0.00993324
MobiDBLite 624 712 89 -
MobiDBLite 625 712 88 -
MobiDBLite 800 860 61 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0158100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…