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LotjaGi6g1v0163700.2

Overview

Field Value
Gene ID LotjaGi6g1v0163700
Transcript ID LotjaGi6g1v0163700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase DRS1; TAIR: AT4G16630.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28; TrEMBL-Plants: tr|B9R8B1|B9R8B1_RICCO Dead box ATP-dependent RNA helicase, putative; Found in the gene: LotjaGi6g1v0163700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:44763465..44763876) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCAGACATTGTTGTGGCTACTCCTGGACGCATGATAGATCATTTACGCAACTCTATGTCAGTGGATTTGGATGATCT TTCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAATGCTGAAATTCATGAACTTGTGAGTTTAG TAGCTCTATAATTCAACAATCATTATGGTTATGTGTATTACAACCTTATATTAATTTTGATTTTGGAATAAAATGTCACA AAATATTGATTTTTAACAGGTTCGCATGTGTCCCAAAAAAAGGCAGACCATGCTGTTTTCAGCAACCATGACTGAGGAGA TTAACGAACTCATTAAACTTTCCCTGTCAAAACCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGCCCAGCAACTTTG ACTGAAGAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0163700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCAGACATTGTTGTGGCTACTCCTGGACGCATGATAGATCATTTACGCAACTCTATGTCAGTGGATTTGGATGATCT TTCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAATGCTGAAATTCATGAACTTGTTCGCATGT GTCCCAAAAAAAGGCAGACCATGCTGTTTTCAGCAACCATGACTGAGGAGATTAACGAACTCATTAAACTTTCCCTGTCA AAACCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGCCCAGCAACTTTGACTGAAGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0163700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFNAEIHELVRMCPKKRQTMLFSATMTEEINELIKLSLS KPLRLSADPSTKRPATLTEE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
1 92 92 3.6E-31 –
CDD
cd17947
1 86 86 1.68706E-49 –
ProSiteProfiles
PS51192
1 85 85 18.048
IPR014001
PANTHER
PTHR24031
2 88 87 5.2E-28 –
PANTHER
PTHR24031:SF637
2 88 87 5.2E-28 –
Pfam
PF00270
2 73 72 1.1E-17
IPR011545
SUPERFAMILY
SSF52540
2 85 84 2.38E-24
IPR027417
ProSitePatterns
PS00039
31 39 9 -
IPR000629

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0163700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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