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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0178100 |
| Transcript ID | LotjaGi6g1v0178100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4; TrEMBL-Plants: tr|A0A151SI68|A0A151SI68_CAJCA Heat stress transcription factor B-4; Found in the gene: LotjaGi6g1v0178100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47011921..47013736) extracted from Lotus japonicus Gifu genome v1.2.
GTATAATGATAAATTTATAATATAATAAGAGTGTGTGTGTGTTAAGGGGGCTTTAAAATTGCTGGTGTAGTGAGTGAAGA GTAGTATAACAACTTCACAAGAATCAACACTCTTTGGTTGAGCAATATGGCTTTCACAGCATTAGACATGTGTGAGGAGA ATATGGTTTTCAGTTTGGAGTCTCAGAAGTCAGTGCCTGCACCTTTCCTGACAAAGACATACCAGCTTGTTGATGACCCT CTCACTGACCACATTGTGTCTTGGGGTGAAGATCACATCACATTTGTTGTGTGGAGGCCCCCTGAGTTTGCTAGAGATCT TCTTCCCAACTATTTCAAACATAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGTCAGGATCCTTACCTCCT TATACACTTCTCTACTCTCTACTCTCCATCATTGTTTCTTTTTCACCTCATTAATAACATGTCTGCATCAGCTTATTATT GCTCATAATCAATTCGGACACATAGAAGCAACGTGCATGTTTGGAAACTCTCCTATATTTGATTCTGAAGTTTAAATAAT TATGGGGATGAGCTTTGGGAGTACCTTCTAGGTTTTAGAATTGATCCAAGCATGCATGCTATCACAAAAGCTTCTTCCCA TAATTGATTTTGGTTTTAGAATTAATTGTAGTGGTTTAAGTTTGATTTTTCCATGACCAAATTGACTAAATATTGCTTCC ACTTAGAAGCTAAAGAATATTGGATGTCCATTCTAATAGTCATTTGTTATATTTCATTGACCTATATGACCAACTTATAT GGTTACTTAGCTATCTGATTGCATTATGTTGTTTGGTAATATATAATAGTACTACTTTGGCTTCATAGATTCTCTAAGAT TAGTAAAACAACATGTGTGCAGGGTTTCAAGAAGTTAGTTGCAGATAGGTGGGAGTTTGCAAATGAGTTCTTCAGAAAAG GAGCTAGGCACCTGTTATGTGAAATCCACAGGAGAAGAACACATAATCATCAGCACCATCACCAACTCCACCTTGTTCAA CCACCACAGATTCTTCAGCAAGATCATGAAAGTCTCTGTTGGCCTGACCCTCCATTATTACCATCTCCTAAATTAAGCAC AGATATTTTAACAGAACTTTCTGAGGACAACCAGAGACTAAGAAAAAAGAACTTTATGCTCTTATCAGAACTCAGTCAAA TGAAGAATCTGTACAATGACATTATATATTTCATCCAAAACCATTTAAAACCAACAACACCCTTTGACCAAAGAAGCAGT AGTGCTTTCCCAAGGCTGGTGGATTTGGATATGTTGCCTGATTCTCGAACAGATGTGGGACTAAGAAATATGAAAAGATG TATCATAAAGAAGTCTTTGATAAGTTGTAATGAGGAATCAAACAGTTCTGTGAAGCTCTTTGGGGTTCCATTAATTGGAA AAAAAAAGATTGCACTCAGATAACATAAATTGATGGACAAATGTATTGAAAGGGTGTCTCATGAGGTTTATTAGCTTGCA TTTAGATTGCCCTGACTGTTTTTATTGAGTAGAATCTCTTTTGTTTAAAAAGACAAGGATCTTCTAGGGAGTTAATCATG TTCGAGCTAGGTATGATTAGCTTTTTCTACCAGATATTTAACGCGTGCAGGTGCATTCATTTCTGGTACTAGTTGATCTA TGCGTTTGGTGGTAACTTGAGCAGAATCTTTTTAGTCATGTATAGCGCTGGTTGATGTTTTCATTAGATTTTGGTATTCC CTTTTTGCAATCTTATTGTTGGAGTTGTAAATTATATTATAGTTTGTAAATCTTAT
CDS sequence (LotjaGi6g1v0178100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCACAGCATTAGACATGTGTGAGGAGAATATGGTTTTCAGTTTGGAGTCTCAGAAGTCAGTGCCTGCACCTTT CCTGACAAAGACATACCAGCTTGTTGATGACCCTCTCACTGACCACATTGTGTCTTGGGGTGAAGATCACATCACATTTG TTGTGTGGAGGCCCCCTGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAACATAACAACTTCTCAAGCTTTGTTAGG CAACTCAACACCTATGGTTTCAAGAAGTTAGTTGCAGATAGGTGGGAGTTTGCAAATGAGTTCTTCAGAAAAGGAGCTAG GCACCTGTTATGTGAAATCCACAGGAGAAGAACACATAATCATCAGCACCATCACCAACTCCACCTTGTTCAACCACCAC AGATTCTTCAGCAAGATCATGAAAGTCTCTGTTGGCCTGACCCTCCATTATTACCATCTCCTAAATTAAGCACAGATATT TTAACAGAACTTTCTGAGGACAACCAGAGACTAAGAAAAAAGAACTTTATGCTCTTATCAGAACTCAGTCAAATGAAGAA TCTGTACAATGACATTATATATTTCATCCAAAACCATTTAAAACCAACAACACCCTTTGACCAAAGAAGCAGTAGTGCTT TCCCAAGGCTGGTGGATTTGGATATGTTGCCTGATTCTCGAACAGATGTGGGACTAAGAAATATGAAAAGATGTATCATA AAGAAGTCTTTGATAAGTTGTAATGAGGAATCAAACAGTTCTGTGAAGCTCTTTGGGGTTCCATTAATTGGAAAAAAAAA GATTGCACTCAGATAA
Protein sequence (LotjaGi6g1v0178100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFTALDMCEENMVFSLESQKSVPAPFLTKTYQLVDDPLTDHIVSWGEDHITFVVWRPPEFARDLLPNYFKHNNFSSFVR QLNTYGFKKLVADRWEFANEFFRKGARHLLCEIHRRRTHNHQHHHQLHLVQPPQILQQDHESLCWPDPPLLPSPKLSTDI LTELSEDNQRLRKKNFMLLSELSQMKNLYNDIIYFIQNHLKPTTPFDQRSSSAFPRLVDLDMLPDSRTDVGLRNMKRCII KKSLISCNEESNSSVKLFGVPLIGKKKIALR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 209 | 204 | 2.0E-103 | – | |
| PANTHER | 6 | 209 | 204 | 2.0E-103 | ||
| Gene3D | 18 | 118 | 101 | 1.4E-36 | ||
| SMART | 23 | 116 | 94 | 2.4E-54 | ||
| SUPERFAMILY | 24 | 116 | 93 | 4.62E-31 | ||
| PRINTS | 27 | 50 | 24 | 7.2E-19 | ||
| Pfam | 27 | 116 | 90 | 9.7E-29 | ||
| PRINTS | 65 | 77 | 13 | 7.2E-19 | ||
| ProSitePatterns | 66 | 90 | 25 | - | ||
| PRINTS | 78 | 90 | 13 | 7.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0178100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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