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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0180700 |
| Transcript ID | LotjaGi6g1v0180700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat family protein; TAIR: AT5G12320.1 ankyrin repeat family protein; Swiss-Prot: sp|Q6F6B3|TANC1_RAT Protein TANC1; TrEMBL-Plants: tr|I3SL28|I3SL28_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0180700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47236970..47240480) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAGACCAAGCCCAGGTGTTACTCAACAATAAAGAAAACAACCGCAAGAGCAAGCAGCACATGTTTGTTTGTAACTTC TGTTTCTCAAACCTGAGCAGCGAGGTGAGGTAACATTAACAACAGGAAATGGGTGCGGCAGACGCGAGCATAAAACTGCA AGCTCCGCCTGAAACGACGCCGGAGAACGTGGAAGCCTTGCTTGAGGTAACCCACTCTTGTGTGTGTGTTGTGTGTGCTT GGAAGTTTGAACTGAATGTTATTGAATTTTGAAGTTTGGTTGGTGTGTTTTGAGTGACAGGCTGCAAGGTATGATGACAT GGATGATGTTGTCAGCTTAGCATCCAATGGTGTTCCTCTTGATTCCAAGGATCATCAGGGGAGAACAGGTTAGATATTCA ACTTGTGTTGTAACTATCAAATCAACTTCTAAGTGTTTCATTCATTTTTTAAGTTTGTTATTTTGTGGGGTTTGGATTAT GGATTGGTTTTTGTTGCTTTTTGGGTTTCATACTGTTATTTAGGGTTTAGTAAGGTTTAAGGGTAATTGATTATTTAGAG TAAAGCTTGATACAATTTGCATTTAGTTTGACATATTAAGGACTTTTCAGTTAAGTTCAGTCTGAATAAAACTAGAGCAG ATTTCTAATTGCGCGAAATCGAAATGTTATCTAGTGAACAAAAGGGGTAGAGAAGTCCAGAAGCAAACCAACTACCAGAC CATCACAATGAATCAAGCTGCTAAACTCAGCTGAAGGGGGTATATTCTGTAAGCTTATCAGGGAACTTGTTTCTCTTGAT TTGAAGCATAGCTGATATTACGTTCCAAACCCTGCTAATCTGTTTAGCTTCCTAGCCACTTTTGTCGTTTCCTTTCGGGG AATCAAGGATCACAGCAAGAGAAACCTATGAAGCCAAACTCTTCTGTTTCCTGAGCTCCTGGCTAATTTAAAACCTTCTC AAGATCCTCAAATCTTAGCAATGAAATAATTTGAGCTTCTCGTATTTTGTGTGAACCCTTTGATCTAATGCCCCACATTT ATATTAACTTCCTCCCTTGCTAGAATCATCCATTTTACCTCCTACTCTAGAAATGCATAGAACCAGAATACATTTGAGCG ATTGAGTCTTCCGCATTGTGTCTCTTTATCTTAGCATTAAGATTAACATATGTTATAGTGAAAGTGAAGGTCCAACTTCC CTCATATGCTGCACTTTGCAATGAAGTACTAGTAGTAGAAGTATCACTCCCCGTGTCTCCTATGATAAGGTTGATTTTGG TTATAACTTTTGTCTTCTTGCTAGAAAATTCACCTATTTTGATGTAATAAAAATAACTATTTTGTGTTAAATTCATTTAG TTGTTGAGTTAAATTCAATTCTGAATAAAACTATAACAGATTATGTGTTGCATTGCGTAATAACTGTTAAGTGCTCAAAT TGAGATTTTAAAGAGATGGCAAGGTAGATTATGGTAATAAATTTTTATCTTAAGCTTGATCATGATTAGATCATGGGATA TAGAGTCTTGTGTGGTAAGAGCCCATTTCATAGAATTCATTTAGATGGATCAGAATAAGAACCAGCCAGAGATAATAATG TTTTGAAGAAGATAATTTTATCTGCTGATCAATTCCGAAAGAAGAGATTTGCCTTTTCTATTGATTCCTCTTTTTCCCTT GTACTTTTCTTTTGTGCTTGACTTTGCTCCTCTAATGTATACTTCTAGCTCTTCATATGGCTGCGGCTAATGGACATATT GATATTGTGGAGTATTTAATCAGTAGAAGAGTGGTGAGTAGCTTTTTTGACAAGTCTTCTTTTTATTCTAAATTTTTGCT ATGAATAAGTCATTGGTTGATTACTAGAGTTAGATAAGAAAATTTCTGTCTGATAGTAAATCTTTTCATGGACCATTACC ACCTTTTTTCTTTTGGGTGATTCAATACTGTCACTTTCTATTAGATGATATGCACTGTTCTCTATCTAAGTTTAATCAAA ACATGTTTTCGTGTTACACGCCCCACTTTCCCCCAACTTATGCCCCTTTTTGTGATAACTTGTAATATTTACACCTGCTT TACATTCCAAAATTTGACTGATACACTCACACACACACACTGCTAAAGTTGAAAATATCTGCTCACACACATAAAAAACT CAAAGACCAGCCATGGACTTAAAATTACAGTGTATTTAGCACAGAATCCCAATTTGAATGTAGGAGGAACTCAAAAAAAA ACTTAGTAAACGTCCCACTTCACAGGACATGGTTACATGCTCTCTTTATACAGTCATCTCACAGTATTTTTTAGTATGTT TATAAATCCATATCATCCATCTGACAAAAACTAGAAAAGTATCATGTTTTCACTCCTTTATACAATGTCGCTACAACATT TATGAAGATAAGTTATGCACATTGCTTGAAAAATCATGTCTAATACCAAGCTGTAAATGGGAATAACAGTTATGTCGTTA ACTAAGTTATATTCAGATAAACCAACAATATATTCAAAAGAAAGTTGGACCCAAACCTATTTGGATAGAGTATAATGGAA ATTTACGTAAGGTGGTTTGGTCAACTGAAAAAGGAAGCTTAATGGTGGCTCCATTGAGAAAAGTAAATCAAATTGGGGGT ATGGACGGAAAAAACTTCATTTTAAAATAAATAGTGAAAAATATAACTTCTATTCATCCCTTACCTAACCTATAAGTTGA AACATGTGAAATAAGCCCCCTTCCTTCTCTTTCCTTTTCTATCACACATCATAAGGTTTTAAAAGCTTGTAATTGTGTCA ACAGGATCTTAATTCAGCGAATGAGGAAAAGAATACACCTCTTCATTGGGCTTGTCTCAATGGGCATATTGAGGTAAATA CTCTGTTATTCTAAGGACTCCCCTTTTCATTCACAGGTCATGGTTTTCTTTAACAGGAAATTACTTTTCAGGTTGTGAAG AAGTTAATCATGGCTGGAGCTAATGTTGGTGTTTTAAACAGGTCTGTTATATCACCTGAGTCTAAAGCATTCTAAAAAGA GTTTTGTCTAAATCATCTGTGTTAACAATGTTGCTACTTTTCAGTCACGATAGGACTCCAATGGATGAAGCTGTGACTAG GAGTAAACTTGAAGTGATGGATGCAATTAATGAGGCAGTGGCAATAGTTGAACTTCGTGGCGCCCTGGTTTCTTCCCAGG AAACTTGAAGTTTATGCTACTCTAAGTAGCTTGTTATATGAAAAATTGAGGAAAGTTACACATGCCTTCCTACAACTACA ATGTTTACTTTGTTAGTGTTAACAGGATCATGGTCAAACTCCTCACTGGAAAATTGAAGTAAAGAAGTTCCAATATTTTT TGTGTGTGCAGTTAGTGTTTCAGGAAATCCTATGAAATATCATCCAGTCATAAAGGGACCAAAAGGATCTTACTATTCTG GAACTAATATCAATGGTTCCTTTTACTAAATGCTTTTTGAAATTATAATCTTAATGGTATTTTTGTCTGAC
CDS sequence (LotjaGi6g1v0180700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCGGCAGACGCGAGCATAAAACTGCAAGCTCCGCCTGAAACGACGCCGGAGAACGTGGAAGCCTTGCTTGAGGC TGCAAGGTATGATGACATGGATGATGTTGTCAGCTTAGCATCCAATGGTGTTCCTCTTGATTCCAAGGATCATCAGGGGA GAACAGCTCTTCATATGGCTGCGGCTAATGGACATATTGATATTGTGGAGTATTTAATCAGTAGAAGAGTGGATCTTAAT TCAGCGAATGAGGAAAAGAATACACCTCTTCATTGGGCTTGTCTCAATGGGCATATTGAGGTTGTGAAGAAGTTAATCAT GGCTGGAGCTAATGTTGGTGTTTTAAACAGTCACGATAGGACTCCAATGGATGAAGCTGTGACTAGGAGTAAACTTGAAG TGATGGATGCAATTAATGAGGCAGTGGCAATAGTTGAACTTCGTGGCGCCCTGGTTTCTTCCCAGGAAACTTGA
Protein sequence (LotjaGi6g1v0180700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAADASIKLQAPPETTPENVEALLEAARYDDMDDVVSLASNGVPLDSKDHQGRTALHMAAANGHIDIVEYLISRRVDLN SANEEKNTPLHWACLNGHIEVVKKLIMAGANVGVLNSHDRTPMDEAVTRSKLEVMDAINEAVAIVELRGALVSSQET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 151 | 147 | 3.3E-37 | ||
| SUPERFAMILY | 16 | 144 | 129 | 6.13E-36 | ||
| PANTHER | 16 | 141 | 126 | 8.2E-36 | – | |
| ProSiteProfiles | 19 | 150 | 132 | 34.482 | ||
| Pfam | 22 | 73 | 52 | 1.7E-9 | – | |
| ProSiteProfiles | 52 | 84 | 33 | 14.452 | ||
| SMART | 52 | 81 | 30 | 8.5E-8 | ||
| PRINTS | 53 | 68 | 16 | 8.9E-8 | ||
| Pfam | 76 | 126 | 51 | 2.4E-12 | – | |
| SMART | 85 | 114 | 30 | 5.6E-7 | ||
| ProSiteProfiles | 85 | 117 | 33 | 13.25 | ||
| PRINTS | 101 | 115 | 15 | 8.9E-8 | ||
| SMART | 118 | 147 | 30 | 790.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0180700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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