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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0184800 |
| Transcript ID | LotjaGi6g1v0184800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G10260.1 Reticulon family protein; Swiss-Prot: sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8; TrEMBL-Plants: tr|I1KXW8|I1KXW8_SOYBN Reticulon-like protein; Found in the gene: LotjaGi6g1v0184800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47903525..47907550) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAAAATAAATAAATTATTTGATAGAGAATATTGGGGTTCCATCATGTACTGTTACATTGAGCTAAAGATTCAAAGTA CAAACGCTACAAAAACAAAATTGAACACATAAAAGAAGCAACCGATGATTTGGTTTGGTTGGCAGTTGACTAGTTCGTGA GTCATTGTTGTTGTTCTGCTCTTGCATGCAATTTATTGGACTTTGAATTGAATAAAGTAAACTTGTTATTTCATAGCAAC CCCATCATTTTGTTTTCCCTCTCTGCATCACCATTTCGTTTCAATCTCCCTCTGCTGATTCTGGTTAGTGAATTTCATTT GCTTATGCTGCCAAGTTTCATTCTTTCTTCTATCACTCAATTGATTGATGCTTGTTGTTCAAGGGGTTGAATTTATTTAT GGGGGTTTATTGTTTGTTTAGCCAAGTACTTGTGTTTGAATCTTTTTCTGATTTTAGATTGATCTGTGTCTTGATATGTC AAATGCTCTTTATGCTTGTGAAGAAAACAAAAAAAAAATAAATGGTATCCCTTTTGCTTTCCCAATTATAATTCTCCAAA AAAATTTATTTTTCTGATTTCTGATTTGGCTTACTAACTCTTCTCATGTGTGTGTGTCTTGCCTCAAGCTACAACTTGGT CAGTTGCCTCCCAGTTTCACATTTTTTGCTTTCTTTCTAATGATTGCTAACCCATTTTATTAGTAAGCCATTTTGAAAGT TGGTGCAACATTTATGAAGGGGATCAAAGGTAGTTTTGCTCACCTTTTGATGATGAATAAACCAGAGAATGTGAATGATA TTTGATTATGATGCTAGCTACAGTATTACATAAAGGGTTTGTTTGTGAGTTGAGTTTTGGAGGGCAGAGAAGGAAAGGGA AGGGGAGGGGGAGGATTATGGCCTATGGGAAACCCTCCTCTTGTTTGGGAGATTTTAAAAAGGGCAAGAGTTTGGGGAAT TTTAAAAACCCACCAAGATCCTTCTTTAGTTGTTCTCTGGAGTTTCCTCAAATTGGAGGGTTAAATTGACTAAGAGTAGC CTTTTTAGACCAACAAGATTTTTTTGGTTTTGGTTGGTTATAAGAGTAGCCTTAATTTATGACTTTATTTTGAAGTTAGC AATATGGTCACCTCTTTTATTATGTCTCAGAAAAAAAAAGGGACCTCATAAATTCATTTCATGTGCTGGTTTTCTAATTA TTAGTTAAAATGCAGTAATGTTGGTTTTAGAAATTGGGGTTAGGCCGCACTACCCCCCGTATAAGGACTATTGTAGTCAT ATCTCTAGTCAATATGAGACCCTAACGGTAGGATATTAGAGCTATTTTGTAACAATCTTGAATAATGTTGTGTTTGGTTC TTATTAGCACAGGAACAATGTCTGAGAAAATTACAGCTGCGAACCTTCTTTACAACCTTGTGGACACATTTGCTGAGAAG GGAAAAGTTGAATCATTCTTTGAAAACGAGAATTCAAACTCAGCAAGCTCTCAGGTCAACAAATTGTTTCAACGCCAGAA AACCGTCCACCATCTTTTAGGAGGTGGAAAATGTATGGTATTTATAGTCAATTTATAGTAAAATGTGAAGTCTTAGCATC AATTAAACCATTTGAGTCACACTTTTTCTTTTTTGTGCCTTTGAATTTCATAGCTGCGGATATCTTGTTATGGAGGAACA AGAAGATTTCTTCTAGTGTTTTAACTGGCGCAACAACTGCATGGGTGCTTTTTGAATGGCTTAATTATCATTTTCTTACT CTTTTAAGCTTTGCTTTGGTTCTTGGTTTGCTTGCACAGTTTCTATGGTCAAATGCTTCTAGCCTTTTTAACAGGTTACT CTCTCTCTCTCTTTCCCCTCCTCAATTTTATGTGGATATGTTACTCAACTTTCAACTTCATTTAAAAACTTATTTGGTTA TACAAGAGGTTCAAGCATCTTTACTTCTCTGCTTTTTCTTTCTTTAGTTCTGTTAATGTGTTTCAACATTTTACAGCTTT AGCTAAGTATCATTTGTTCTTTATGTTAACAGTACGCCATCTAAAGTGCCCCGTTTTATTCTCCCCGAAGAATTCTTTGT GAATATTGCTCATGTAGTTGGCGATGAGGTTAACCGTGGTCTGAGATTTCTTCAAGATATTGCTTGTGAAGGAAACTTGA AGCAACTGCTCATTGTATGTTGGTACTTATGTTTATTTTCTTTGACATTGCCATTTATCATCCAGAGTCTATATCTTAAA ACATGTTGTTTTCCTCAGTGCTTGATTTTTCATTCAGTTCCTTTTATGTTGAAGTTTCCTACATAATTTCTAAATTGTAA AATGTTAGCGATATTTGGTTAGTTTTCATGGCAAATGCTTGTTTGACACTGTCTTCTGGAAAAAAGGAGCAATATAATTT TGAAAGAGTGTTGCTAGTATGTCATGTGTGTATACTAAATTTAATAGCACCTTTTAACTGGTGCCATTTAGAAAGAGATA TGCTGCTTGAATTTGGGGGGTAGAATCAAGTAAATTAAACCTAACACACTAGGAGCTTGTGAAGGTTATTTCTATGCTAA GTATCAATATACGATATGTTATATGATCATGTCTCATCATGTCACATTGTTGTCATCAGAGATATGAACATTATGGTGCT AAGACTATATTGAAAGCACCATCATAATGGGGCACCCTCAACCTCAACTGTACCATTTGTAACTTGTTTAAACCATTTAT GTACCTTAAATTATATTTATTTCAACATGTAGCAAAGAAACTTAGATGAAATTTACTATTTTATCATAGGATTTGTGATC AATGGTTAAAAAATCCCCAGGTTGTTGGAAGTTTGTGGGCTGGTGCAGTGATTGGGAGCTGGTGCAATTTTTTGACTGTC ATATATATTGGTGAGTGATCTTTCTTTGCATTATTTGATAGTTCTACTTCTAACTTAATTAACATGCTGACCCTAAAATT TGCTTATACTATCAACATTGATGCCTTGTAACCTAACAGTCATGGGTTCTAGTTGTGGAAATGGTCTCTCCCATTATAAG AAATCTTTTCTCCGAAAAAATTTGAACTGTTGTTGAAATATGGAAGTTGTACAATATTTACCCCCTTTTTAGGTGCAAAG TATACGTGATAAAAACTAGGGCCCTAAAAACTACTAGCATACTAATAGCAAAATGAATTTGCACCACCATTGAGTATTAT GGGAAACATTTTTTTTTAGATATATTGTGGTAATGCAAGGATGAGGGAATTTTGATGGTAACAGGGTACATGAGAACAGA GACACACCTAGTTAAGACTGAATAATATGTTTGGATTCACTTATAGTCCTCCCAGGTTTACTTATCATCCCATAAAAGCT ACTTCTAGTAGCTTATCCTAGAATCACTTCTCCCTCAAACATGAAAATCTATCGAATTTCCAAACACCTTTGTTTATAAA CAAATATAAGCTCAATGTTCATCTATATTATTTTGTGGAACTATTTCTTCCAACCACTCACATGGAAGACACCTAGTAGA AGTTCAACAATGATGTATTTTTTCTCCTTCTAGTTGATTATTCATGGTATACTTGATTGCTGAAACAAATATATATTTTG TCCGAAGGTTTTGTTGCTGCATACACACTCCCAGTTCTCTATGAAAGATATGAAGATGAGGTTGACAATTTCTTCTACAA CTTCCTTGAACAGATACAAAATCAATATCAAAAGTTGGATGCTAGTGTGCTGAACAAAATCCCCACCAAGGGGAATGTGA AAGGACATAAGCATAACTAGGTTTATCCATATGTAAATAATTTTGACATTCAAAATGACCATCTTTCATTCATGATGGAA ATTGGGAAGGGCTAAAGGTAATAAATAGGGGGAATAAAAAAAAAATTACCATATGAATGATATTGATAGGAACAAAATTG CATTTATATATAGTTGTTGTTTCTGTTGTTCCTTCATCTAAGTTGTGGTCTTGAAAACTAGTTATCGCATTCTTTGACTG AACAAAGAGATATTGATATTCTAGCA
CDS sequence (LotjaGi6g1v0184800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTGTTTGGTTCTTATTAGCACAGGAACAATGTCTGAGAAAATTACAGCTGCGAACCTTCTTTACAACCTTGTGGA CACATTTGCTGAGAAGGGAAAAGTTGAATCATTCTTTGAAAACGAGAATTCAAACTCAGCAAGCTCTCAGGTCAACAAAT TGTTTCAACGCCAGAAAACCGTCCACCATCTTTTAGGAGGTGGAAAATCTGCGGATATCTTGTTATGGAGGAACAAGAAG ATTTCTTCTAGTGTTTTAACTGGCGCAACAACTGCATGGGTGCTTTTTGAATGGCTTAATTATCATTTTCTTACTCTTTT AAGCTTTGCTTTGGTTCTTGGTTTGCTTGCACAGTTTCTATGGTCAAATGCTTCTAGCCTTTTTAACAGTACGCCATCTA AAGTGCCCCGTTTTATTCTCCCCGAAGAATTCTTTGTGAATATTGCTCATGTAGTTGGCGATGAGGTTAACCGTGGTCTG AGATTTCTTCAAGATATTGCTTGTGAAGGAAACTTGAAGCAACTGCTCATTGTTGTTGGAAGTTTGTGGGCTGGTGCAGT GATTGGGAGCTGGTGCAATTTTTTGACTGTCATATATATTGGTTTTGTTGCTGCATACACACTCCCAGTTCTCTATGAAA GATATGAAGATGAGGTTGACAATTTCTTCTACAACTTCCTTGAACAGATACAAAATCAATATCAAAAGTTGGATGCTAGT GTGCTGAACAAAATCCCCACCAAGGGGAATGTGAAAGGACATAAGCATAACTAG
Protein sequence (LotjaGi6g1v0184800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCLVLISTGTMSEKITAANLLYNLVDTFAEKGKVESFFENENSNSASSQVNKLFQRQKTVHHLLGGGKSADILLWRNKK ISSSVLTGATTAWVLFEWLNYHFLTLLSFALVLGLLAQFLWSNASSLFNSTPSKVPRFILPEEFFVNIAHVVGDEVNRGL RFLQDIACEGNLKQLLIVVGSLWAGAVIGSWCNFLTVIYIGFVAAYTLPVLYERYEDEVDNFFYNFLEQIQNQYQKLDAS VLNKIPTKGNVKGHKHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 18 | 8 | - | – | |
| PANTHER | 12 | 256 | 245 | 1.5E-118 | – | |
| PANTHER | 12 | 256 | 245 | 1.5E-118 | – | |
| Phobius | 19 | 100 | 82 | - | – | |
| ProSiteProfiles | 70 | 257 | 188 | 43.564 | ||
| Pfam | 71 | 224 | 154 | 2.9E-50 | ||
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 101 | 121 | 21 | - | – | |
| Phobius | 122 | 181 | 60 | - | – | |
| Phobius | 182 | 206 | 25 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 207 | 257 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0184800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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