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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0185300 |
| Transcript ID | LotjaGi6g1v0185300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb family transcription factor; TAIR: AT2G40260.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A0B2NRI3|A0A0B2NRI3_GLYSO Putative Myb family transcription factor; Found in the gene: LotjaGi6g1v0185300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47969949..47973604) extracted from Lotus japonicus Gifu genome v1.2.
TATTTGTATTAGACGCAAAACGCCCACACTCTTATTTGACATTATATATATTAGTGGTTTTCCATCAAACTTCTCTGCTG CTGCTGCTTCATCTGAGAAAATGAAGAATTGTAGTACGAGAAATGGTGGCGACACAAGGAAATACCACAAATCGGAGCAA CCACGCCTGAGGTGGACACTTGATCTCCATGAACACTTTGTTGAAGCTGTGGAAAGTCTAGGGGGAAAACAAAGTAAGAT TTCCTTCATATATATATGTTCATGCTGATCTAGGGCTAGTACAATTTGATTTCTTTTGCCTTGCATATGTGTGAGTTCGA TCCATTACTTCACAATTTCACTTTCTTTAATTTCTCTGTTTTTCTTCTATAATTTTCCTCCTTGTATTCTCCCACTAATT TTTTTGAAAAAAAGTAAAAAAGAAGCTAGAGAAAAATTCTATGACATGCCTAAGAATTGAGATCGGCAAGGAATTCTATA ATTTTTTTATAAGCCAAAGATATATTGAATGAAGTACGTACAAAGGGTACTTTAATCCAATACAAATGAAGCAAACAGAC GAAACATATATAAGGGAAAAGATATACGTATTAGCTAACTATTTTGTAAACTGGTTTTTATGCAGAGGCAACTCCAAAGC GCATTTTGCAGCTAATGAATAATGTCAAAGGACTCAGGATCTCTCACATTAAAAGCCATCTTCAGGTATATTTTATATGC ATCTATACTTAATCCATGTCATGTGGTCCAAACTCCAATCCTTTACACATTGATTTTCTTGTTTATATTCTTTTACAAGT AAAAACATTAATTTTTATTAGGGGATCATGTTCTGTGATAAACACCAACATTTGAAAATTGCAACTTTTGTTTTCCTATT ATTATGAGATATGTTAGCCCTGTATATAGTAGATTGTTACAGAAAAGAAGAAGATTTGTTCTCCTTTCCTTGCAAGTAAA ATGTCATAGTGTCATATCTCTCTCTTTCTTAATTAAGTGCATGTTAACTGGAAAGCTCTTTACAAATTGTTTAAGAAGCT GATCATGTGAGTTGCTTGAGTTTTAAAATTAATTCTAATTAATAAAGAAAAATTGATCATCAAATTAAACATGTGTAGGG CCAAAAATTATGCTATATATTGTGGTCGAATCTTAATGTCTAAAGACAATTTAACCTCAAACACTAACATTTATAAACAA TTGTTTTGCTCTTCAAGCCATGTGGGACTTGCTTCTTAAATTTCATCACCAGTCAAAGCATGAGGGGAAAAACGGTCTAG CCGTCTAGGAGATTTTAATTTGCAACACAGTGGCTACAATTATTGCTGAACACAGAACAAAAAGAAAAGACTGTAGTTCG TGGAAAGCAATAAGATTTATCACTTCACAATATCCACATCGATCTATATTACACATGCACCTCATTTATGATGATTATAT ATCTACTTTTACTTTTCACTTGATGACAAAGCTTCTTCAACATTGATCATCTGATCTGATATGATTCCATTATGAACCTC ACTCGTTTGTGTTGTTACTTTACTTGCATTGGTAGCCTAAAAACTAATAGATAGCCATAGCTAGCATGTTGTTGGCTTTT TCATTCTATGAAAAAAATTAAGAAATATTGATCAATAATAACTCATTTGTACTTACCTTAAGATGATACTTCTTAGCTTC CTCATCAAAACTCAAAAGTATTAACAAATCAAGGATTATACTTTTGTATGCATTTTTTTTTTAAAAGAAAAAGTATTTTG TGCATGCGTTGCATATCAATGAGTATAAAACCATGTACTATCTAGGTCAATGATAGTATAAAACCATGTACTACTACTAT CTAGGTTAGGTACATGTGCATATATATGGTTCACCAAAAAGTGAATATATATTAAAGACATAAAATTCTTCTTCTCTCCG TCTTCACTCTTTTAGCAGAATCTATAAAAACGAGTTTGTTTCATTGCATGTACATATAGCTTGCTTTTTGCCAAAAAAGT GCACAGCTTTAAAGAAAGAGATAATTACTGTTCTCCTTTAAGCCTTGAAAATAAGTACCACACTACACTTCTCTTCAACT TTCAAGGCCGTTGCTAGGCTTTAGCAAGATTACATGTATGTCGCCCTCTTTGCTTAAATGACTGTAATCATGATGATTCC AATCTCTAGTTGATAAATCCAAACAGCACTGGAGACAATTTTATTATATGATTACAAGCTTCAATGTATATCAAGAGAAA GCCTTCTTCTATGTAGGCAACACGTGGTTGTTCAAATGCCGTTATTCTCTATTAAATTAGTCTTCAACAAATCAGTTTAA ATTTAATAATAGTTTGGTTCCAGGGTATAACTTGATTTCCCAAAAATTATGTCCCTGCTGTGAAAAGTATACATATGCCC CACCTAATTTTGCCCCACCAAATTTTGAATGTTGTCAGCTCGAATTAATTATTTACCTTTTGTGAAAAATACTTGTTTAA AAAAATAATCCACCTACATTCTAGCTAGGTATCAATCAAATATTTAAAGCTCACTTGAATTTTTGTTAATATCCTCAGTA CTCTGGATGGCAAATAAATACTAATACACATCAAAATTAAACTAAATCAATAATTGAGGACAATTCCTGCTAGAATTCTC TTTCTCTCTTCCTGCTACCTCATAATTAATTTATTTGTATAATGTGATCATTGTGGTTTGCTAGGTGAAGGTACATAATA ATCTTGAAGAGGCCAATAATAAATTAAGTGTTGTTCGTGTAGAATGAATTCAAGTCTCTTAAATATGTAATTTTTTTTTG GAAAGATGAATATGTATTTTTTTTACTAAGCAAAGTTGCATTAGAAACTAGTACAAGGGTGCTAGAACCCAAAATTCAAA GTTCAGCCCTTATAATTGAGTGGCAAATTATGTGTGTGCACATTAATTAATTTTCCTTTCTACTGATTAAAAAAAAAACA AATTTAAATAGTGAAGCCATCATGCATTTAATTTCCTTCCATCTTAAGAGAAATTTTGCTTTGTCAGATGTACAGAAACG TGAAGGGTCGACGACACACGATGTATGAGTTGCAGAAAGAAAATGCACAAGTTAGCGACCTTCCAATCTGCTCCAGATCA TCACTAAGAACAAAATTAAGTGTATCAAAATATGAAACTGATTATGATCTGAATCAGGTATATAAACACTTGTCCTATTT GATAATTTAACTAAGTGTCTAGCTCTTAGTTCAATCAAGTAAAGTCATGCATGATAACATAATGAGGTACGAATAATATG TAAACTATTACTATATGTTGCAGGAGCCCGAGTCAAGTGCATGCTTACTTAGTGACATTTCAAATGATGAAGAAGAAAGT AGTCGGACAATGAAATTTCTAGATGAACGAATGATGCATAGTGATCATGAACGAATGCATACAGAAGATAACCATGTAGT TGATTCTAGTTCTGTACAAACTCATGGGAGCAATAGTATAAATTTAGACCTAGCAATTTGAATATTTAATGGGCATGTAC ATTTTGTGAACTAATTACACGCAATACTTGTCATCAATAGTTTCAGGTTTTTTGGGCAGAGATAATATTGTAATAGCTAA TGTAATATTGTAATATATTATATCTTGAAGAAAAGATTTACGTACGTATCCTTCCA
CDS sequence (LotjaGi6g1v0185300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAATTGTAGTACGAGAAATGGTGGCGACACAAGGAAATACCACAAATCGGAGCAACCACGCCTGAGGTGGACACT TGATCTCCATGAACACTTTGTTGAAGCTGTGGAAAGTCTAGGGGGAAAACAAAAGGCAACTCCAAAGCGCATTTTGCAGC TAATGAATAATGTCAAAGGACTCAGGATCTCTCACATTAAAAGCCATCTTCAGATGTACAGAAACGTGAAGGGTCGACGA CACACGATGTATGAGTTGCAGAAAGAAAATGCACAAGTTAGCGACCTTCCAATCTGCTCCAGATCATCACTAAGAACAAA ATTAAGTGTATCAAAATATGAAACTGATTATGATCTGAATCAGGAGCCCGAGTCAAGTGCATGCTTACTTAGTGACATTT CAAATGATGAAGAAGAAAGTAGTCGGACAATGAAATTTCTAGATGAACGAATGATGCATAGTGATCATGAACGAATGCAT ACAGAAGATAACCATGTAGTTGATTCTAGTTCTGTACAAACTCATGGGAGCAATAGTATAAATTTAGACCTAGCAATTTG A
Protein sequence (LotjaGi6g1v0185300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNCSTRNGGDTRKYHKSEQPRLRWTLDLHEHFVEAVESLGGKQKATPKRILQLMNNVKGLRISHIKSHLQMYRNVKGRR HTMYELQKENAQVSDLPICSRSSLRTKLSVSKYETDYDLNQEPESSACLLSDISNDEEESSRTMKFLDERMMHSDHERMH TEDNHVVDSSSVQTHGSNSINLDLAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 179 | 176 | 3.8E-39 | – | |
| PANTHER | 4 | 179 | 176 | 3.8E-39 | – | |
| Gene3D | 17 | 79 | 63 | 3.8E-24 | – | |
| SUPERFAMILY | 19 | 75 | 57 | 2.33E-13 | ||
| TIGRFAM | 21 | 75 | 55 | 2.2E-21 | ||
| Pfam | 23 | 74 | 52 | 4.1E-7 | ||
| MobiDBLite | 163 | 186 | 24 | - | – | |
| MobiDBLite | 166 | 181 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0185300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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