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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0186500 |
| Transcript ID | LotjaGi6g1v0186500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein Lea14; TAIR: AT2G44060.1 Late embryogenesis abundant protein, group 2; Swiss-Prot: sp|P46519|LEA14_SOYBN Desiccation protectant protein Lea14 homolog; TrEMBL-Plants: tr|C6T750|C6T750_SOYBN Late-embryogenesis abundant protein 2; Found in the gene: LotjaGi6g1v0186500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48044089..48045257) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTACATCTGATAAACCAGAAGTGGTGGAAAGGGGTGCTAAGGATGAAAAGCATAAGGAAGGTGATGATGAGAAGGG TGGATTTCTCAATACCGTGAAGGGTTTCATTCAAGACATTGGTGACAAGATTGAGGGAGCAATTGGGTTTGGGAAGCCTA CTGCAGATGTTACAGGGATACACATTCCTTCAATTAATCTTGACAAGGCAGATCTTGTTGTTGATATTCTCATAAAGAAC CCGAATCCTGTGCCGATTCCCCTGATTGACATAAACTACGTGGTTGAGAGTGATGGGAGGAAGCTAGTTTCAGGGTTGAT ACCGGATTCCGGTACAATCCATGCACATGGAGAGGAGACAATCAAAATCCCTCTTACTTTGATTTATGATGACATAAAGA GCACATATAGTGATATCAAACCAGGAAGCATCATTCCTTATAAGGTGAAGGTTGATCTCATTGTTGATGTTCCTGTCATT GGAAGGATAACTATACCCTTGGAGAAAACTGGAGAGATCCCCATTCCATACAAGCCTGATATTGATGTTGAGAAGATTAA TTTTGAAAGGTTCTCTTTGGAAGAGACAGTTGCTATTCTTCATTTGAGGTTGGATAACAAGAATGATTTTGACCTCGGCC TCAATGCGCTTGATTATGAAGTTTGGCTTGGTGATGATAGCATTGGAGGTGCTGAACTTGCGAAATCTGCAAAACTTCAG AAGAGTGGGATTAGTTACATTGATGTTCCAATTACCTTCAGGCCTAAGGATTTTGGCTCTGCACTTTGGGACATGATGAG AGGAAAGGGCACAGGATACTCTATGAAAGGACATATTGATGTTGACACTCCCTTTGGAGCAATGAAACTGCCTATTACCA AAGAAGGCGGTACCACCCGTCTCAAGAAGAAGAAGGAAGATGGTGGAGATGATGATGATGAGGAGGTTTGTCAACTTCTT TTCTCCATGATTCCTGTTTATATCCTTCTTTATTGTTATTATTTCATTTTTGAATGTTCTCTAGAAAATTTGCTCATATA TTTTTGTATGTATGTGCGATATTTCCCTTTAATCACAAACAAAAATAGGTAATCTAATGCATATGCTATGATCGTTGATA CTGAAAATTGGCTAAATTTTGATGCTATCAGCATGCGAAATCAGACTAG
CDS sequence (LotjaGi6g1v0186500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACATCTGATAAACCAGAAGTGGTGGAAAGGGGTGCTAAGGATGAAAAGCATAAGGAAGGTGATGATGAGAAGGG TGGATTTCTCAATACCGTGAAGGGTTTCATTCAAGACATTGGTGACAAGATTGAGGGAGCAATTGGGTTTGGGAAGCCTA CTGCAGATGTTACAGGGATACACATTCCTTCAATTAATCTTGACAAGGCAGATCTTGTTGTTGATATTCTCATAAAGAAC CCGAATCCTGTGCCGATTCCCCTGATTGACATAAACTACGTGGTTGAGAGTGATGGGAGGAAGCTAGTTTCAGGGTTGAT ACCGGATTCCGGTACAATCCATGCACATGGAGAGGAGACAATCAAAATCCCTCTTACTTTGATTTATGATGACATAAAGA GCACATATAGTGATATCAAACCAGGAAGCATCATTCCTTATAAGGTGAAGGTTGATCTCATTGTTGATGTTCCTGTCATT GGAAGGATAACTATACCCTTGGAGAAAACTGGAGAGATCCCCATTCCATACAAGCCTGATATTGATGTTGAGAAGATTAA TTTTGAAAGGTTCTCTTTGGAAGAGACAGTTGCTATTCTTCATTTGAGGTTGGATAACAAGAATGATTTTGACCTCGGCC TCAATGCGCTTGATTATGAAGTTTGGCTTGGTGATGATAGCATTGGAGGTGCTGAACTTGCGAAATCTGCAAAACTTCAG AAGAGTGGGATTAGTTACATTGATGTTCCAATTACCTTCAGGCCTAAGGATTTTGGCTCTGCACTTTGGGACATGATGAG AGGAAAGGGCACAGGATACTCTATGAAAGGACATATTGATGTTGACACTCCCTTTGGAGCAATGAAACTGCCTATTACCA AAGAAGGCGGTACCACCCGTCTCAAGAAGAAGAAGGAAGATGGTGGAGATGATGATGATGAGGAGCATGCGAAATCAGAC TAG
Protein sequence (LotjaGi6g1v0186500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTSDKPEVVERGAKDEKHKEGDDEKGGFLNTVKGFIQDIGDKIEGAIGFGKPTADVTGIHIPSINLDKADLVVDILIKN PNPVPIPLIDINYVVESDGRKLVSGLIPDSGTIHAHGEETIKIPLTLIYDDIKSTYSDIKPGSIIPYKVKVDLIVDVPVI GRITIPLEKTGEIPIPYKPDIDVEKINFERFSLEETVAILHLRLDNKNDFDLGLNALDYEVWLGDDSIGGAELAKSAKLQ KSGISYIDVPITFRPKDFGSALWDMMRGKGTGYSMKGHIDVDTPFGAMKLPITKEGGTTRLKKKKEDGGDDDDEEHAKSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 314 | 314 | 6.9E-181 | – | |
| PANTHER | 1 | 314 | 314 | 6.9E-181 | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 8 | 26 | 19 | - | – | |
| Gene3D | 27 | 179 | 153 | 1.2E-52 | – | |
| SUPERFAMILY | 43 | 181 | 139 | 2.09E-40 | – | |
| SMART | 55 | 172 | 118 | 1.4E-36 | ||
| Pfam | 76 | 171 | 96 | 1.5E-13 | ||
| SUPERFAMILY | 176 | 304 | 129 | 1.83E-35 | – | |
| Gene3D | 180 | 305 | 126 | 1.3E-18 | – | |
| SMART | 181 | 297 | 117 | 3.9E-20 | ||
| Pfam | 201 | 295 | 95 | 1.4E-11 | ||
| MobiDBLite | 293 | 320 | 28 | - | – | |
| MobiDBLite | 296 | 320 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to desiccation | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. |
Expression pattern of LotjaGi6g1v0186500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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