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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0186600 |
| Transcript ID | LotjaGi6g1v0186600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein family; TAIR: AT5G26960.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q6NPN5|FK113_ARATH F-box/kelch-repeat protein At5g26960; TrEMBL-Plants: tr|V7BJN1|V7BJN1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0186600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48048399..48050288) extracted from Lotus japonicus Gifu genome v1.2.
TATCGAAGAATTAAATTGACTAATTGCAGGAAAAATTGACCAATGTCTACATTCTCTAGAGTAAAAAAAAAGTGCCGTAT GAAAAAATTGTATTAAAAATTCATTAATCAAACTTATTTTTTCTTGGAATATATAGTAAATCCAAAGGGTTCTTCATCAC CTCACTTGCATCAATGTATGTATAAAATACCCCACCATTTTTAGCAGTATCTCCTTCTCTCTCCCTCTAACTTAATCCAA AATGAGTTCGGAGAGAGAAAGCTGCAACTCTCGCCACTTCACATGGCTCATGAAATCTTGTTTCCCCAATCCAAACCACA CCACCACCACCACCACCGTCGCCAAACCACCGCAACAACCTCCCACCACCATTTCCTCCCTCCCTGACGACATCATTCTC GACTTCCTCACCCGCGTCCCACCCTCTTCCCTCCCTTCCCTCTCCCTCGTCTGCCGCCGCTGGTCCCACCTCCTCCACTC CCCCGACTTCTCCGACCTCCGCCGCCGCCGCCACCTCCTCCGCCACTCCGCCCTCGCCCTCACCGCCACCGACTTCGGCC TCTCCTCCGCCACCCTCCTCGACGCCAAATGGAACCCCTCCCTCTTCCTCCCCTGCTACAACGCCGTCTCCCTCGAGACC TTCCACTCCCTCCTCTCCCACGCGCGCCTCGCTTCCATCGGCCCCAGGGTTTTCATCGTCGGAAGAGACGCCACGCTGCG GTACGACACGTGGACGGCCACGGTCACCCCGCGGTCGACCATGATTTTCCCGCGCAAAAAATTCGCCCTCGCCGCGGTTT CCGGGAAACTCTACGTCGCCGGCGGTGGCTCGAGGACCGCCGCGGTGGAGGAGTACGATCCTGAAACCAACACATGGCGC GTGGTGGCTAACGCGCCGAGGAGGAGGTACGGCTGCATTGGCGCTTCTGCAGATGGAATCTTTTATGTGATTGGTGGGTT GAGGATTGGCGCGTCGGTGAACGAACTCTCACGCGCGGGGGTTGCTGCGGAGGCTCACGCGGCGGTTTATGCTAGCTCGA TGGACTTGTTTGACGTGGAGGCGGGCGCGTGGCTTCGGAGTCGGGCGGTGCCGGGAGGTGGTTGCGTGGTGGCGGCTTGT GCTGCGGCGGGGCGCGTGTACATGTTGACGAGCCACGCGGTGGAGCTTTCGTTTTGGAGTTTCGATGCGAGGAGGAAATG TGGTGGCGGTGGTGGTCGCAGTGGCGGCGCGTTTGGAGAGTGGTGCAGGATTAAGAGCCCGCCGCTGCGGGCGCAGGTTA GAGTGGACACGAGAATGAGGTTCAGTTGCGTGGGAATTGGGGAGAAGGTGGTGCTGATTCAATTGGCGGGGTGTGGGAAT GATGGGAGGGGCTCAAGAGAAGGGGCTGTTTTGGTGTATGATTGCGCCACCGGAGAATGGGGCAAAGGGGCTGATTTACC GGAGGTTTATCGACGCGCCGCCTATGTGGGTGTGGAATGCTAAGATGCGCCGGTGAAGTGGATCATTGTTGCGTGAAAGC TCATAGGGTAGGGGGAATCTAGCTAAGGTTGTGGGGTATTTTGGGAACTCAACTTTGGTTAATCTTTGGGAATGAGCATT TCCTTCTTGTGATTGGCCTATTTTGGCTTGTTCTTTGCAATTTAGTTTAGATTTGTTTTCTAAAAAAAATATTCACATTT ATAGTTAATGAATCTATCATCTACATTGATTTAAATTCAATCCTATCTTTGTTAATAGAGCTAGAAGTTTTTGCGACCAA GTACATTTAGTCATGTTTCTAGTTTCTACTATCTTTAGATGCTTATTATTATTGTGTGTTCTGGTATTCTTGTTTGCTGA AATGGGAAATTGATGATCATCTTGTTTTTAGGTGTGCTTGTTTGAAAATT
CDS sequence (LotjaGi6g1v0186600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCGGAGAGAGAAAGCTGCAACTCTCGCCACTTCACATGGCTCATGAAATCTTGTTTCCCCAATCCAAACCACAC CACCACCACCACCACCGTCGCCAAACCACCGCAACAACCTCCCACCACCATTTCCTCCCTCCCTGACGACATCATTCTCG ACTTCCTCACCCGCGTCCCACCCTCTTCCCTCCCTTCCCTCTCCCTCGTCTGCCGCCGCTGGTCCCACCTCCTCCACTCC CCCGACTTCTCCGACCTCCGCCGCCGCCGCCACCTCCTCCGCCACTCCGCCCTCGCCCTCACCGCCACCGACTTCGGCCT CTCCTCCGCCACCCTCCTCGACGCCAAATGGAACCCCTCCCTCTTCCTCCCCTGCTACAACGCCGTCTCCCTCGAGACCT TCCACTCCCTCCTCTCCCACGCGCGCCTCGCTTCCATCGGCCCCAGGGTTTTCATCGTCGGAAGAGACGCCACGCTGCGG TACGACACGTGGACGGCCACGGTCACCCCGCGGTCGACCATGATTTTCCCGCGCAAAAAATTCGCCCTCGCCGCGGTTTC CGGGAAACTCTACGTCGCCGGCGGTGGCTCGAGGACCGCCGCGGTGGAGGAGTACGATCCTGAAACCAACACATGGCGCG TGGTGGCTAACGCGCCGAGGAGGAGGTACGGCTGCATTGGCGCTTCTGCAGATGGAATCTTTTATGTGATTGGTGGGTTG AGGATTGGCGCGTCGGTGAACGAACTCTCACGCGCGGGGGTTGCTGCGGAGGCTCACGCGGCGGTTTATGCTAGCTCGAT GGACTTGTTTGACGTGGAGGCGGGCGCGTGGCTTCGGAGTCGGGCGGTGCCGGGAGGTGGTTGCGTGGTGGCGGCTTGTG CTGCGGCGGGGCGCGTGTACATGTTGACGAGCCACGCGGTGGAGCTTTCGTTTTGGAGTTTCGATGCGAGGAGGAAATGT GGTGGCGGTGGTGGTCGCAGTGGCGGCGCGTTTGGAGAGTGGTGCAGGATTAAGAGCCCGCCGCTGCGGGCGCAGGTTAG AGTGGACACGAGAATGAGGTTCAGTTGCGTGGGAATTGGGGAGAAGGTGGTGCTGATTCAATTGGCGGGGTGTGGGAATG ATGGGAGGGGCTCAAGAGAAGGGGCTGTTTTGGTGTATGATTGCGCCACCGGAGAATGGGGCAAAGGGGCTGATTTACCG GAGGTTTATCGACGCGCCGCCTATGTGGGTGTGGAATGCTAA
Protein sequence (LotjaGi6g1v0186600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSERESCNSRHFTWLMKSCFPNPNHTTTTTTVAKPPQQPPTTISSLPDDIILDFLTRVPPSSLPSLSLVCRRWSHLLHS PDFSDLRRRRHLLRHSALALTATDFGLSSATLLDAKWNPSLFLPCYNAVSLETFHSLLSHARLASIGPRVFIVGRDATLR YDTWTATVTPRSTMIFPRKKFALAAVSGKLYVAGGGSRTAAVEEYDPETNTWRVVANAPRRRYGCIGASADGIFYVIGGL RIGASVNELSRAGVAAEAHAAVYASSMDLFDVEAGAWLRSRAVPGGGCVVAACAAAGRVYMLTSHAVELSFWSFDARRKC GGGGGRSGGAFGEWCRIKSPPLRAQVRVDTRMRFSCVGIGEKVVLIQLAGCGNDGRGSREGAVLVYDCATGEWGKGADLP EVYRRAAYVGVEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 413 | 408 | 9.3E-152 | – | |
| PANTHER | 6 | 413 | 408 | 9.3E-152 | – | |
| SUPERFAMILY | 37 | 126 | 90 | 6.67E-13 | ||
| Gene3D | 41 | 97 | 57 | 2.0E-7 | – | |
| ProSiteProfiles | 41 | 90 | 50 | 12.465 | ||
| Pfam | 43 | 83 | 41 | 5.9E-8 | ||
| SMART | 47 | 87 | 41 | 1.3E-4 | ||
| Gene3D | 126 | 409 | 284 | 1.2E-26 | ||
| SUPERFAMILY | 132 | 403 | 272 | 2.48E-32 | ||
| Pfam | 177 | 217 | 41 | 2.8E-9 | ||
| SMART | 189 | 232 | 44 | 2.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0186600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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