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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0189100 |
| Transcript ID | LotjaGi6g1v0189100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0189100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48433164..48438161) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAGTGCAAGAGATTGCTATCAGCGTCACCTAACTCTGTAACTGGCGTTCCTCTCCGCCGCTGCTTGCTTCCGTAAAT CTTACAATGTCGTCGTCGTTGTGGCGGTTTTCGTTTCTTTCTAATCTCACTGTTCTTCGTTCCTATCACTCTCAACCCCA TTCCTTTCACAATGTTGGTGATGCTGTTTCCTTCTTCAATCGCTTACTCCAAATGCAACCTACCCCTTCCATCATCGAAT TTAGTATGATTTTAACTTCCCTTGTCAAGATGAAGCATTACTCCACCGCCATATCGCTTTCTCGCCAAATGGAGATCACT GGAATTACGCCCAGCCTTGTCACTCTCAACATCCTCATCAATTGCCACTGCTACCTAGGTCAAACCACTTCCGCATTTTC TGTATTGGCCAACATTCTCAAGAGAGGTTATCACCCAGATACCATCACCTTCACTGCCCTCATGAAAGGTCTCTGTCTTC GCGGCAATGTTCACAGAGCTCTGCAATTTCATGATGACGTGCTAGCTCAGGGATTTCGGTTGGATCAAGTCACTTACGGG ACATTGATCAATGGCCTATGTAAAATGGGTGAAACAAGTGCTGCTTTGGAGTTTCTGAGACAGATTGAAGGGCAATTGAT TATTCCTAATGTGGTAATGTACACCACCATCATCGATAGCCTGTGTAAAGATAAACTTGTAAGTCATGCTTGCAATTTAT ATTCTGAAATGATTGTCAAGGGAATATCTCCTAATGTAGTCACGTACAGTGCTTTAATATATGGCTTTTGCATTGTTGGC CAATTGAAACAAGCAATTCGTTTATTAGATGAAATGATGAAGAAAAACATCGACCCCAATGTTTATACTTTTAGTATATT GGTCGATGCTTTATGTAAGGAAGGGAAAGTGAAAGAAGCTAAAAATGTGTTAGCTGTGATGATTAAACAAGGTCTGAAAC CTAATGTTGTTACTTATAGTTCCTTGATGGATGGGTATTGCCTAGTTAATGAAGTGAATAAAGCCCGGGATGTATTCAAT GCTATGGCTCGGTGGGGAGTGACTCCTAATGTTCAGAGCTACTCTATTATGATTAATGGATTGTGTAAGATTAAAATGGT GGATGAAGCCTTGAATCTCCTTGCAGAAATGGATTGCAAAAAGATTATTCCTAATACAGTAACCTACAGTTCTCTTATTG ATGGTTTATGCAAAACGGGGAGAGCCTCTCATGCTTGGGAGCTTCTTGAAGAGATGCATGTGAAAGGACAACCGGCCAAT ATAGTCACTTACAATTCTTTATTGGACGCTTTATGCAAAAGCCATCACGTTGACAAGGCAATTGCACTTATCAAGAAAAT TAAAGATCAGGGTATTCAGCCGGATGTGCTCACATACACAATACTCATAGATGGACTATGTAAAGAAGGAAGACTCAAAG ATGCACAAGAGGTTTTTCTGGATCTTGTGATTAAAGGCTATCATCTAACTGTCTATACATATACTGTTATGATCAATGGG CTTTGTAAAGAAGGCTTGTTTGATGAAGCGTTGGCCTTGCTGTCAAAAATGGAAAATGAGGGATGTACTCCTAATGCTAT AACTTTTGAAACTATTATTCATTCACTCTTTGAAAATGGTGAGAATGACAAGGCTGAGAAACTTCTTCGTGAAATGATTG ATAGAGGTCTACTGGAAAAATTATAGATACACACGGAAAAGGAGACATACATTTTGATTAGTTTGATGATTTTATCAGGT TCCAGATTACTCACTACCTGGAGATGCAGGACCATAGCAGAAAGAGAGCAAGGTATATCGGTGTTAAAGACAGTGAAACA TATTGAAGTTCATGAGTTTTGGATTGTGAGGCAGCTAAAAAGGGTTCAATTTTTAGTCCATTGATAGGGCAAGGCTCAGT TTTGGACTTGTGCTCGTACTGATGGATATTGCTAGTTCTATGTTGCTTCTATTTCTGACTTTCACTTGGAAGGTCCTTGC ACCATTCTCTGGGTACTCTTGCTGTCCTTGGGACTACCCTCTAAGTCATTTAATTTGTAGTTAAAGTAATTCCTTTAACT GACAGGCTACCTGTTATTTATTTTTCATTTCTCGTCTAACTTTGGTATATAAATTTTGAACAACTATGTCTTATCCTTCT CTCTTGATGCTGGTCCCATGCTTGCCCTCCCACCAGAGATTTGCATCTAGAATCAGAGCAAATGCAATTTCTTTATCATT AGCCACATATGGGTAATTGATTTTCCTTGATTAATAGGTTACCATATATTTCCCCAATCTCCATGAAAATCTATTCCCCT TTATTAACAAGGCCTGAATTAACAAAAGCTGTAAGCAGCCCAAGAAATGTTACCTGGTCTGGTATAACATATGATAGTTT CATTTGGCTGTACAGCTCACCACATTGAAACCATTCTCTATGTTTAGAATAAGCACTTATCATGGAGTTCCATTCAATTA TATCTTTATGGCTGCTTTTGTCTTCATAAAAAAGAGATATGGTTGATCATGTTGATTCCTACCTCACTAGGACCCTATTA AATTCAATTCAATACGTGAACTCTCTCTGTTTTCTGACAGGGTATGTTAATTTGACCTATGCCCTATAGCTTAATATTCT TTAATCTCGTTCAAGTATTTAGAGATTTTGGTGTTTTGCGCTTGTAGCTTATCATATCCAAAGTTTTTCAGGATCTTTAC TTTCTATGAAATTGTTTATGTGTGATTTATTATCTTGTCCTATAGCTACATGTTGGCAATTGTATATAGCTGAAAGTTTG AGATATGATGAATTGTGTTGGGAACCCCAACTTCGCTAGTCCACAACACAGGAAACAGGTAAGGCAAATATGCAATTGAT TGTTTATTGATGAATGAAAAGGGATTACACAGAAAGGGAATGGATCCGATTCTGACACAGAGCACTGCTCCTATAAGAAG CTCAAAGCTTCTTACTCATGACTCTAAAATAACAAATAATCTAGATACCTCTCAACCTCTCTCTCATCCCCATATATTGT TAGCTGACAGTACAATCAAGATTCACTCACTCACCATTCTGTTAGGACCTACTTCGGATTCCCCATTTTACCCCTTCTAG AATAGACTCTCCATAGCTTAGGTCCCTTTGCTTGCTGATGGGCCAAAGGTTCGTCATTTGGGCTGCTGCTTGTATGATTC CCGGGCCTATCAAATTGTGCTAGCAATCCTTATAGGGTTTCAACAATTGGATTTGAGGGTCCTAGTGATTTTATTTGCTT GACTTTTGCAGTTCTTTAAGCAAAACTGTATGCTTGTAAGCCCTCTAGCCTTCCAAAATATCCTCCTAGCAAGGAAATGG ATGCAAAGCTACGGGATGAAGAAGCTAGAAGGTGGCCTAAATTACTTATGGCATCTCAATGACCATTTAATCAGAATCTG TTGAAACCCTTATTATGAACAAAGTTTACCAAAACGCTTAAATGTTGTATATGTTTTCACTATGTTTTACTTTAGCTGGC TCTGCCATCTGTCTTTGTCTCTATAATTACCTATTTTCCATTTTATTTCTGTCATGCATTTGCTCATTTCACGTCTCTTC CTTCTTCATCTTCCTTTAGTTGTTTACTTGTTTAGCATTTGTATGGCTTGAACATGCTTATTTAATTATCCTTCTCCATC TTTATTTTCTCCTCCTCCTCCTCCTCATGTTACTGTAGGCAGCATAAGATATTTCTTTTCAGCTGGCAAAATTAAAATGC ACTCCTATCAGTTTTTAATTTAATTATGTAAATTATGTCATTACTGTAAATTGAGAGAAGCTGGTAAGGCTAATGCTGAT GGTGTCAAGAAATCTTGTCCACGTGACTGAGCTGGGAGGGGAATTCCTGTTCTAGATGCCAATGCTGAACTGAGAGCAAA TATTAATGTATGTCTGATATGACATCTAATTCACTCCAGTAAGTATTTCCTATTGCCTATGAATAATGTGATGAACTAAT AAATCTATCAATTGGAATTATGGTGTAGATGTCAACTTTATATGTATAACAAAATCCATTTCTTGTCTAGTTTGCCCTTG GCTGCATGCAGATGCAGTCTCTGTCCATGTATGATTGCAAAAGTCTCTCTCTCTCTCTCTCTCTGGCTTTTTGTATTCTT TCTTCACTTTACTAACTTATTTTGGTAGAAGGTTATTATTATAGAAAGTGTATGCTCCTTAACTTATGCTCCAAATAATA TCTATTGGTAGGAGTTTACACTTTCTACTGGGAAATTGTAAAAGGAGCATACACTTTGGCATTTTGTATCCTTCCTACTT AACCAAGAATTGATTAACTGGTTTTTCTCCTTTTACAATTTTTCTATGCTAAAAATAGCAACTTGTGTAAATAGGGTCAA AATCTATAGCCATGAGTGGCAGTGGAATGTGCATTTGCTCATCATCTCCTTCAAATAGCGATCATCTGTAGTTTAATTTT TAACTGGATGAGATCTTATCCATTGAATATTATGTGTTTTATAGTTAACTAAATTATATACATACAATGGTTTATTCTCT CACCATTGGATTGAACTGTAGGGACATGCAGTTTGGGGTTAACTCCTGAGAATCCTGGTCCAGTGCAATTTAAGTTTGTG GTTCCAGAATTCGACTTTTAGAAGGCTGCAATTTTGTAACCACCGAATTTATCTTTGGGAATTGCACACCTACTTGATTC CACTCTTATCTACTTGATTCTTAATTATTTGTTGAGATTTATATATCTTCTGTTTAGTTGGGTTCATTAAGTTTCTTTGT TGAAAGTGTTTTTGAAAGGATGTTTGGTCGAAAATATGAATGTGCATACTATCTGAAAATTGTTGAGATTTTTGTTTGAC TTTATGTAAAGTTTGCTGAGATTTTTGTTTCGAATGAATGCAAAATTTATGCGGATACAAATGTGAAGGTAAATTCGCAT GTAATAATAGTACTTTTCATGCTTAATTCTAGCCCGTG
CDS sequence (LotjaGi6g1v0189100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGTCGTTGTGGCGGTTTTCGTTTCTTTCTAATCTCACTGTTCTTCGTTCCTATCACTCTCAACCCCATTCCTT TCACAATGTTGGTGATGCTGTTTCCTTCTTCAATCGCTTACTCCAAATGCAACCTACCCCTTCCATCATCGAATTTAGTA TGATTTTAACTTCCCTTGTCAAGATGAAGCATTACTCCACCGCCATATCGCTTTCTCGCCAAATGGAGATCACTGGAATT ACGCCCAGCCTTGTCACTCTCAACATCCTCATCAATTGCCACTGCTACCTAGGTCAAACCACTTCCGCATTTTCTGTATT GGCCAACATTCTCAAGAGAGGTTATCACCCAGATACCATCACCTTCACTGCCCTCATGAAAGGTCTCTGTCTTCGCGGCA ATGTTCACAGAGCTCTGCAATTTCATGATGACGTGCTAGCTCAGGGATTTCGGTTGGATCAAGTCACTTACGGGACATTG ATCAATGGCCTATGTAAAATGGGTGAAACAAGTGCTGCTTTGGAGTTTCTGAGACAGATTGAAGGGCAATTGATTATTCC TAATGTGGTAATGTACACCACCATCATCGATAGCCTGTGTAAAGATAAACTTGTAAGTCATGCTTGCAATTTATATTCTG AAATGATTGTCAAGGGAATATCTCCTAATGTAGTCACGTACAGTGCTTTAATATATGGCTTTTGCATTGTTGGCCAATTG AAACAAGCAATTCGTTTATTAGATGAAATGATGAAGAAAAACATCGACCCCAATGTTTATACTTTTAGTATATTGGTCGA TGCTTTATGTAAGGAAGGGAAAGTGAAAGAAGCTAAAAATGTGTTAGCTGTGATGATTAAACAAGGTCTGAAACCTAATG TTGTTACTTATAGTTCCTTGATGGATGGGTATTGCCTAGTTAATGAAGTGAATAAAGCCCGGGATGTATTCAATGCTATG GCTCGGTGGGGAGTGACTCCTAATGTTCAGAGCTACTCTATTATGATTAATGGATTGTGTAAGATTAAAATGGTGGATGA AGCCTTGAATCTCCTTGCAGAAATGGATTGCAAAAAGATTATTCCTAATACAGTAACCTACAGTTCTCTTATTGATGGTT TATGCAAAACGGGGAGAGCCTCTCATGCTTGGGAGCTTCTTGAAGAGATGCATGTGAAAGGACAACCGGCCAATATAGTC ACTTACAATTCTTTATTGGACGCTTTATGCAAAAGCCATCACGTTGACAAGGCAATTGCACTTATCAAGAAAATTAAAGA TCAGGGTATTCAGCCGGATGTGCTCACATACACAATACTCATAGATGGACTATGTAAAGAAGGAAGACTCAAAGATGCAC AAGAGGTTTTTCTGGATCTTGTGATTAAAGGCTATCATCTAACTGTCTATACATATACTGTTATGATCAATGGGCTTTGT AAAGAAGGCTTGTTTGATGAAGCGTTGGCCTTGCTGTCAAAAATGGAAAATGAGGGATGTACTCCTAATGCTATAACTTT TGAAACTATTATTCATTCACTCTTTGAAAATGGTGAGAATGACAAGGCTGAGAAACTTCTTCGTGAAATGATTGATAGAG GTCTACTGGAAAAATTATAG
Protein sequence (LotjaGi6g1v0189100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSLWRFSFLSNLTVLRSYHSQPHSFHNVGDAVSFFNRLLQMQPTPSIIEFSMILTSLVKMKHYSTAISLSRQMEITGI TPSLVTLNILINCHCYLGQTTSAFSVLANILKRGYHPDTITFTALMKGLCLRGNVHRALQFHDDVLAQGFRLDQVTYGTL INGLCKMGETSAALEFLRQIEGQLIIPNVVMYTTIIDSLCKDKLVSHACNLYSEMIVKGISPNVVTYSALIYGFCIVGQL KQAIRLLDEMMKKNIDPNVYTFSILVDALCKEGKVKEAKNVLAVMIKQGLKPNVVTYSSLMDGYCLVNEVNKARDVFNAM ARWGVTPNVQSYSIMINGLCKIKMVDEALNLLAEMDCKKIIPNTVTYSSLIDGLCKTGRASHAWELLEEMHVKGQPANIV TYNSLLDALCKSHHVDKAIALIKKIKDQGIQPDVLTYTILIDGLCKEGRLKDAQEVFLDLVIKGYHLTVYTYTVMINGLC KEGLFDEALALLSKMENEGCTPNAITFETIIHSLFENGENDKAEKLLREMIDRGLLEKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 195 | 172 | 7.1E-148 | – | |
| PANTHER | 24 | 195 | 172 | 7.1E-148 | – | |
| Gene3D | 25 | 181 | 157 | 4.8E-33 | ||
| ProSiteProfiles | 48 | 82 | 35 | 7.848 | ||
| Pfam | 82 | 130 | 49 | 1.4E-10 | ||
| ProSiteProfiles | 83 | 117 | 35 | 9.416 | ||
| TIGRFAM | 85 | 119 | 35 | 6.5E-5 | ||
| SUPERFAMILY | 92 | 326 | 235 | 1.67E-6 | – | |
| ProSiteProfiles | 118 | 152 | 35 | 10.238 | ||
| TIGRFAM | 120 | 153 | 34 | 5.7E-5 | ||
| Pfam | 149 | 180 | 32 | 7.5E-9 | ||
| ProSiteProfiles | 153 | 187 | 35 | 10.567 | ||
| TIGRFAM | 155 | 181 | 27 | 2.1E-5 | ||
| Gene3D | 182 | 252 | 71 | 5.6E-22 | ||
| PANTHER | 187 | 281 | 95 | 7.1E-148 | – | |
| Pfam | 187 | 215 | 29 | 4.9E-8 | ||
| PANTHER | 187 | 281 | 95 | 7.1E-148 | – | |
| ProSiteProfiles | 188 | 222 | 35 | 11.323 | ||
| TIGRFAM | 190 | 224 | 35 | 1.1E-8 | ||
| Pfam | 222 | 271 | 50 | 7.0E-19 | ||
| ProSiteProfiles | 223 | 257 | 35 | 12.606 | ||
| TIGRFAM | 225 | 259 | 35 | 3.9E-8 | ||
| PANTHER | 250 | 349 | 100 | 7.1E-148 | – | |
| PANTHER | 250 | 349 | 100 | 7.1E-148 | – | |
| Gene3D | 253 | 322 | 70 | 1.9E-23 | ||
| ProSiteProfiles | 258 | 292 | 35 | 12.682 | ||
| TIGRFAM | 260 | 294 | 35 | 4.6E-8 | ||
| PANTHER | 281 | 425 | 145 | 7.1E-148 | – | |
| PANTHER | 281 | 425 | 145 | 7.1E-148 | – | |
| Pfam | 292 | 341 | 50 | 4.8E-19 | ||
| ProSiteProfiles | 293 | 327 | 35 | 12.112 | ||
| TIGRFAM | 295 | 329 | 35 | 3.6E-8 | ||
| Gene3D | 323 | 393 | 71 | 3.0E-23 | ||
| ProSiteProfiles | 328 | 362 | 35 | 11.553 | ||
| TIGRFAM | 331 | 364 | 34 | 2.7E-8 | ||
| PANTHER | 359 | 535 | 177 | 7.1E-148 | – | |
| PANTHER | 359 | 535 | 177 | 7.1E-148 | – | |
| Pfam | 360 | 390 | 31 | 2.6E-11 | ||
| ProSiteProfiles | 363 | 397 | 35 | 12.233 | ||
| TIGRFAM | 365 | 394 | 30 | 3.5E-8 | ||
| Gene3D | 394 | 459 | 66 | 1.7E-22 | ||
| ProSiteProfiles | 398 | 432 | 35 | 12.803 | ||
| Pfam | 398 | 446 | 49 | 8.8E-18 | ||
| TIGRFAM | 400 | 434 | 35 | 7.5E-9 | ||
| ProSiteProfiles | 433 | 467 | 35 | 11.444 | ||
| TIGRFAM | 436 | 466 | 31 | 3.4E-5 | ||
| Gene3D | 460 | 538 | 79 | 6.7E-22 | ||
| ProSiteProfiles | 468 | 502 | 35 | 13.866 | ||
| Pfam | 469 | 514 | 46 | 6.1E-14 | ||
| TIGRFAM | 470 | 504 | 35 | 1.5E-11 | ||
| ProSiteProfiles | 503 | 537 | 35 | 10.337 | ||
| TIGRFAM | 505 | 535 | 31 | 1.4E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0189100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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