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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0189200 |
| Transcript ID | LotjaGi6g1v0189200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62670.1 rna processing factor 2; Swiss-Prot: sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial; TrEMBL-Plants: tr|A0A072VJ30|A0A072VJ30_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0189200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48442195..48448813) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTTAATCTAAGAGAATTGAGTAAAATGGACTTATAAATAGGAACGGAGAGAGTATTAATAGTGTTCAAACCTTT TCCATTTACATGACATAAACAAAAGAATGTACACCCCCAACCCCAATGCGCCGAATTAGCCGTTCACAGACAGAGCAGCG TGGTAGTCAAGCCTAGCACTTTTGGAATGATGCTCGGTGTTGTTGGTGTGGTGAGTAGAGCACATCACATATCAACGAAA ATTGCTGCAATGTCATCATCGTCATTATTCAGATTAACGAGGTTTCCCTTTCTTTCTAACCCCACTTTTCTTCTTTCCTT TCACTCTCACTCTCACTTTCATTCTGTTCCTCATTCCTTTCACAATCCTGATGATGTTGTTTCCTTCTTCAATCGCTTGC TCCAAATGCATCCTACCCCTTCCATCATCGAATTTAGTATGATTTTAACTTCCCTAGTGAAGATGAAGCATTACTCCACT GCCATATCCCTTTCTCACCAAATCACTTCCAGCATCTTGATCAATTGTTACTGCCACTTAGGTCAACTTACTTCAGCTTT TTCTGTAATGGGAAACATTCTCAAGAGAGGTTATCACCCAAACACTATCATCTTGAATACACTTATGAAAGGTCTGTCTT AAAGGCATGGTTCAAAGAGCCATGGAATTTCATGATGATGTGGTTGCACAGGGATTTCGGTTGGATGAAGTTAGTTACGC GACGTTGATCAATGGGTTATGCAAAACGGGAGACACAAGAGCGGCGCTGCGGTTACTGAGACAGATTGAACGGCCTAATG TGATAATGTACAGCACAATCATTGATAGTTTGTGTAAAGTTAAACTTGTAAGTGATGCATATGACTTATATTCTGAAATG GTTGCCAGGAGAATTCCACCTAATGCTGTCACTTATAATGCATTGATAAATGGCTTTTGCATTGTTGGTCGATTTCAACA AGCGGTTGGTTTGTTAAACGAAATGGTGTTGCAATGTATTGACGCGGAAGTTCATACTTTTAATATATTGGTTGAGGCTT TATGTAAGGAAGGAAATGTGAAAGAAGCAAAAAATGTGTTTGCTGTGATGGTGAAACAAGGTCTGGAACCTAATATTGTT AGTTATAGTTCTCTCATGGATGGGTACTGTCTTGTTAAGGAAGTAAACAAGGCCAAAGATATATTCAACTTCATGGTCCA AAGGGGAGTGACGCCTGATGTTCAGAGCTATACTATCATAATTAATGGTTTGTGTAAGATTAAAATGGTGGATGAAGCTT GGAGTCTTTTAAATGAAATGCATTCCAAAAAGATAATTGCTGATACAATATGCTACAATTCTCTTATTGATGGTTTGTGC AAATTAGGAAGATCCTTTGATGCCTGGAAGCTTGTTAATGAGATGAATCATAGAGGTATACCACCTAATGTTATCACTTA CAACCCTTTACTGGATGTTTTATGCAAAAGCCATCATGTTGACAGGGCAATTGCTTTAATCAAGAAAATTGAAGAACAGG GTATTCAGCCTAATATGTACACATTCACTGTACTTATGGATGGACTATGCAAAGTAGGCAGACTTAAGGATGCTCAGGAG ATTTTTCAGGATATTTTGATTAAAGGCTACAATTTAAATGTCCGGACATATTCAGTTATGATTGATGGGTATTGTAAAGA GGGTTTGTTTGATGAAGCATTGATATTGATGTCAAAAATGGAAAGCAGCGGTTGTATTCCTGATGCTGTAACTTATGGAA TAATTATTCGTGCTTTGTTTAAAAAAGGTGAGAATGAGATGGCAGAGAAGCTTCTTCGTGAAATGGTTGCTAGAAGTCTA CATTAAGAGTACAACTAGGTAAGTTGCTTTCTAGTTCCATATTAAATCATTAGAAACTTGATTTTGACCATCCAATCTTT AATTTTTGAATGATTGTTACAGATAAAAAATAAGATGCACTACAACTCTCATTTTAGTTCTAATTAAATTCATTTGTTGT TATGCTCCTTTTTCTCTTGCATTGATAACAATGTTCAGTTATTTTAGCCTTGACCTAACTAATCTTTTTCATTCCAATTT ACTGTTGACCTGCTCCATATACTTGTTCTTTTTTCAGTCAGTGCTCATTGTTAATTTTTCAGATAACAAAACAAGCTGAA ACTGATTTGATTATTTGGAATGCTTTACCTCTTATACTTTACTCTATTAATTATCAAAATTAATGATAGCTAAATTTGAT TTTTCTGTTGCTGTTTATTTCTTGTTTGTTTGGCTTCTGGATCTTCTTATCACTGTTAGAAGTGATTACTTTAGGAGAGG GGTGTGGAGGGGGATTATTTGCAATCAACATGTTTAGTTTGTCTTATTTTGGGTATTGTGCTGTGGTTGGTGCAAGTCTT ATTGTTACTGTTTTGCATATCAGATGATTTGGAAAAAACGGAGGATGGTGGTCCTAGGTCCTGACTTGTTCAGATTCATG GTATCGTGTGCCTTACGACAAGTTCCTTCTTCAAATATCAGTGTCATTAAGCTTCTTCAAATACTATGACTCTGAAATGG ATGGTTATGGCCAGCAAATCAATTTCTAAAGATAGGTTGGTTCCTTTGGATGATCTGAGGAGTGTAAAAGCTGAGATTGA GATATTAACTAGGCAATCTCGTGAAAGTTTTAAAGTGGATGGTTTTGTTCTTTCGATGATGGATCTTTGTGTGAGAAGGG AGCCATATCATAGATTAGAGAAGCATGGCCAGTTTTCTGAAATTTGAGCCAGGGTTCTCTTTAGGCACCTAATGCAAGTG CATTTGTACTATCATGAAAATGAGGGTTTTTCATAAAGATTTGAATCTAATTACTCCTAAATATTCATGGTTGAACTTGA CATTTCTTTTGTTGTTTATTTCTTATGACTTTGTGCTGTTTTCACTTGTTATCCTTGTCTGTATGCTGTTTTTGTCATTT TAAAATTTGTTGAGGCTCATTGTTGTTTAGCGTGGTTCAGGTTGGAGTCGGTTGCATAAAAGTTGATTTTTGTTGTGTTT TCCAGTTAGATTTAGTTTACTAGATTTGGTGACAGTTTAATGATATGCCTGATGGAGAAGTTGTATTGTGCTAAATGCTT ACTATCACATTTTCCTCCTTCTCCTTCTCACATTTTCCTCCTCCTCCTTCCTCTTAATCTTAATGGGCTCAAAGGTGTGG AAGTGCTTGATAGAACCATGGTTGAGTTTGTACAAGGTATTAACCTAAGTTTTGTTGAACTGGTTTATTCTCTGCTGCCT CTGAAGCACGGACACGCCTGGGAAGGGGAGTGTCCAGGTGTTGCACACACGTCTGACACCGACACGTGTTGAAAGTGTTC AATTACAAAATTATTTTTTTCAGCTCAGACACAACTTGGACACAGCTTGAACACTATGCCCACACTCGTTCATGGCTAGA CACACAAAGTGTGAGTTATGTGTTCTTGTGAGTTTTGTGTTTTGTTCCATCTAGTTTCTGTTATATCTCTACTAGTAATT TTAATTCCTATCAATTTCATTCCTGTAGAATCTGCTACAATTATCTTAATGAAGTTACAGTACTCTTGTCATATTTGTAT ATAAACTTGGTGTTACTTTATTTTGTGTAGAAGCAGACATAGTTTCTTATCTTTTATTAGCAGATTGTCTTCTCAAATTG TTACAACATATTTTCTTAAAATTAGAAAGAACCAACTTGCCCACCTCATATGATTCCACCAGCTTTTTCACTTCTCCTGT AAGGTAGCGTTTTGGGCTTGACTCTTGTCTCTTGCTTACTGATTACACATGCAGTAGCTTTACTGGTATTAGGAAAATTA TCATATATTTTAACGGAACAGCTTTAGTATGAGTACGATGCATTGGGGAAGTGGTAGAACTGTAGAAGTATAGAAAGGAA ATATGGGATTTGTGTTACATTGATACTCTCTTAACTATGATTTTCTTCCGTGTTTATCAATTTCTCCATTGTACCTGATG TTACAAATTACAATACAATAATAGCAATTGTAGCTGCTATGAGCACTAATCAGGCCACTTCAGGACATGGTTTAAGTATT AGATTTTATGAGGTGAGAAAATGAGAGACAGTAAGGGAAAATGAATATTTTTTAAGAGTGAACTACAGAAGTATCTGATC CGAGTAAGCAGAGGTTGATACTTTTAGAGAGACTTAAGATGAGATTTAACTCATTTATTATAACTGATAACAAAATCAGT TATACCTGTCAGTCACTGCAGGTTATTATACAATGCAGTCAACTTACAGCTAGCCACACTCACGACCTGACTGTACGAGA AGAAACTACACAGTAATATAATATACTCTCTAATATCAACTAGCCAACTAAAACCAAACTTTGATAAACTTTGTGTTATT TAGAAGATAGTACTTTTCTGGAGCCATTTATGCATAAAAGAAACTCAGAAGCATAGAAGTTTAAGGCTGGTTGAATATTT TTAGAAATTTGAACATAAGAAATTATGTTATGTTACTTAGTAACCTGCACTAGTAGTTAATAATTAAATATTGACCTTAT AGCTTACTGGATATTGGAATTCTCAAGATTTCTTGTTCTACTCATAATTAAAATCGCCTGAATGGAACACAAGTCCAGGA ACTACGTTTCTTATACCAGATTCTGTGACGAGGATTACCAAAATAGTATCTTATAAATAGCCTTTTACAGTAATTATTGA AACTTTAGTTTCAAAAAAAAAATAGTGAAACTTTGTTGGAAAAACTGGGCTACAACTTCACCGTTTTAACCTGCATTAAC TAAGTTATGTGAAAAATAGCTGAGATGTGTTTTTTCAGCTTTAAATAGCTGTGAAAGTTGCACCTTCATTAACTCTCATT TTGATCATTGCTTTTTCCCAATGATATCTCCCTTTCTTGACAAGGAAACTTCCCTATCTCATTCTCTGTTGTTCTACTTA CTTTTGCATTGATGTTTACAGCAGTATTGTGATTGGTGGAATGTGTAATGGTTGAAAACTGAATGAAGCTTAAGAATTTT TGTATTGTATTGTAGCCTAACAAAGGAGATAGTGCATTGCCTGAGTGCATGCAGAAGTTTGTTTGAGTTATATATCACAT AATACATTACCAGATGAGTGTGGAACTGAAGAGGGAACCTGCTAAGTTTCTTGACAAAAGATTGTTGTAGTAAAGAAATA AGCCTTTCAGCGAACTACTGGTTCAGCGGGAAAGAAAGCAGCTACATGGGTAGTTCTGAATGAGATGGAGAAGAAGTTCG CTTCATTTTCAATAATAATTCACCCTTAAGCACAAGGGTATGGTTATGGGGATCTTCCTTGTACTAGAATTTGTTAGGGA CATTTAGGGACTGGTGGTCCATTTAGTGTTAGTGGTTATGGTTGGCAATTGGTATCATTAAATCACTTCCACCATTAGAA GAAACCTTATCCTCAAGGTTGGATTTATAGGATATTGTTGTTGAAGTATGACTTTGTCTTCCCAAGTAGCATCTAAGAGT TCTAATCCTTTCTACTTAACCAAGAAATGATTTACCGGTTTTCCTCCTTTTATAAATTTTCTATGCTAAAAATAGCAACT TTTTCAAATAGGGTCAATTTCTATGGCCATGAGTGGTAGTGGAATGTGCATTTGCTCATCATCTCCTTCAAATAGTGCAA GTTCAGTTTATGGTTCTTTCGTAATTTCACTTTCAAATAGTGCAAGTTCAATTCAAAATTTTCTTTTGAACGAAGTTCAG TTCAATTTTAAAAGTATTCGTTTGGATTTTTGTTGAAGTCAAGGTGAATTCACGTTGAAGATATATTAAAATCACGCTTT TTTTATCCACATTAAACTTAACGTGACAAATTATAAATCATCCGATAGGGCATTAAGATATGTGAACCACGTGTGTATCA GCTCTAACATCAAACCAAACATGCACTAAACACTGAATCAATCACCCGGAATTGCACACCAAACTAAATCAGAGTTAGGC GGAGGAAATTCCAGCTGAAGTTGTCATATTCTTTATCCAAATCTATTTCATTGCAAGTACCCCTTTCTTAACCTCTGATT TCTTCATACAGTGCATAGCCTCCTGGGCTATAATTATATTCTCTGTTGAACACCTCCCTGGAATAAAGCTACCCTGCAGA GGACCAATTAAATCATCAAGGAAAGGTCGAAGCCGCCAACCAAAACTCTAGTCAGGATCTTATAAAGAACACTACACAAG CTCATGGGTATAAATTCTTTTAGTCTAGTTGGAACATCAACTTTAGGAATCAGGACTATTAATGTGTCTATCATGTCAGC GGGAAAGAAAGCAGCTACATGGGTAGTTCTGAATGAGATGGAGAAGAAGTTCGCTTCATTTTCAATAATAATTCACCCTT AAGCACAGGGGTATGGTTATGGGGATCTTCCTTGTACTAGAATTTGTTAGGGACATTTAGGGACTGGTGGTCCATTTAGT GTTAGTGGTTATGGTTGGCAATTGGTATCATTAAATCACTTCCACCATTAGAAGAAACCTTATCCTCAAGGTTGGATTTA TAGGATATTGTTGTTGAAGTATGACTTTGTCTTCCCAAGTAGCATCTAAGAGTTCTAAT
CDS sequence (LotjaGi6g1v0189200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCAAAGAGCCATGGAATTTCATGATGATGTGGTTGCACAGGGATTTCGGTTGGATGAAGTTAGTTACGCGACGTT GATCAATGGGTTATGCAAAACGGGAGACACAAGAGCGGCGCTGCGGTTACTGAGACAGATTGAACGGCCTAATGTGATAA TGTACAGCACAATCATTGATAGTTTGTGTAAAGTTAAACTTGTAAGTGATGCATATGACTTATATTCTGAAATGGTTGCC AGGAGAATTCCACCTAATGCTGTCACTTATAATGCATTGATAAATGGCTTTTGCATTGTTGGTCGATTTCAACAAGCGGT TGGTTTGTTAAACGAAATGGTGTTGCAATGTATTGACGCGGAAGTTCATACTTTTAATATATTGGTTGAGGCTTTATGTA AGGAAGGAAATGTGAAAGAAGCAAAAAATGTGTTTGCTGTGATGGTGAAACAAGGTCTGGAACCTAATATTGTTAGTTAT AGTTCTCTCATGGATGGGTACTGTCTTGTTAAGGAAGTAAACAAGGCCAAAGATATATTCAACTTCATGGTCCAAAGGGG AGTGACGCCTGATGTTCAGAGCTATACTATCATAATTAATGGTTTGTGTAAGATTAAAATGGTGGATGAAGCTTGGAGTC TTTTAAATGAAATGCATTCCAAAAAGATAATTGCTGATACAATATGCTACAATTCTCTTATTGATGGTTTGTGCAAATTA GGAAGATCCTTTGATGCCTGGAAGCTTGTTAATGAGATGAATCATAGAGGTATACCACCTAATGTTATCACTTACAACCC TTTACTGGATGTTTTATGCAAAAGCCATCATGTTGACAGGGCAATTGCTTTAATCAAGAAAATTGAAGAACAGGGTATTC AGCCTAATATGTACACATTCACTGTACTTATGGATGGACTATGCAAAGTAGGCAGACTTAAGGATGCTCAGGAGATTTTT CAGGATATTTTGATTAAAGGCTACAATTTAAATGTCCGGACATATTCAGTTATGATTGATGGGTATTGTAAAGAGGGTTT GTTTGATGAAGCATTGATATTGATGTCAAAAATGGAAAGCAGCGGTTGTATTCCTGATGCTGTAACTTATGGAATAATTA TTCGTGCTTTGTTTAAAAAAGGTGAGAATGAGATGGCAGAGAAGCTTCTTCGTGAAATGGTTGCTAGAAGTCTACATTAA
Protein sequence (LotjaGi6g1v0189200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQRAMEFHDDVVAQGFRLDEVSYATLINGLCKTGDTRAALRLLRQIERPNVIMYSTIIDSLCKVKLVSDAYDLYSEMVA RRIPPNAVTYNALINGFCIVGRFQQAVGLLNEMVLQCIDAEVHTFNILVEALCKEGNVKEAKNVFAVMVKQGLEPNIVSY SSLMDGYCLVKEVNKAKDIFNFMVQRGVTPDVQSYTIIINGLCKIKMVDEAWSLLNEMHSKKIIADTICYNSLIDGLCKL GRSFDAWKLVNEMNHRGIPPNVITYNPLLDVLCKSHHVDRAIALIKKIEEQGIQPNMYTFTVLMDGLCKVGRLKDAQEIF QDILIKGYNLNVRTYSVMIDGYCKEGLFDEALILMSKMESSGCIPDAVTYGIIIRALFKKGENEMAEKLLREMVARSLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 115 | 115 | 4.5E-32 | ||
| PANTHER | 14 | 186 | 173 | 3.4E-146 | – | |
| Pfam | 16 | 47 | 32 | 6.6E-8 | ||
| ProSiteProfiles | 20 | 50 | 31 | 9.723 | ||
| TIGRFAM | 22 | 48 | 27 | 1.4E-5 | ||
| Pfam | 50 | 98 | 49 | 7.7E-17 | ||
| ProSiteProfiles | 51 | 85 | 35 | 11.378 | ||
| TIGRFAM | 53 | 87 | 35 | 2.2E-8 | ||
| SUPERFAMILY | 83 | 352 | 270 | 8.89E-5 | – | |
| ProSiteProfiles | 86 | 120 | 35 | 10.501 | ||
| TIGRFAM | 88 | 115 | 28 | 1.3E-6 | ||
| Gene3D | 116 | 183 | 68 | 7.0E-19 | ||
| PANTHER | 119 | 286 | 168 | 3.4E-146 | – | |
| Pfam | 120 | 148 | 29 | 4.4E-8 | ||
| ProSiteProfiles | 121 | 155 | 35 | 12.682 | ||
| TIGRFAM | 123 | 157 | 35 | 3.2E-9 | ||
| Pfam | 155 | 204 | 50 | 1.4E-16 | ||
| ProSiteProfiles | 156 | 190 | 35 | 11.882 | ||
| TIGRFAM | 158 | 192 | 35 | 2.1E-8 | ||
| Gene3D | 184 | 253 | 70 | 1.1E-22 | ||
| PANTHER | 186 | 396 | 211 | 3.4E-146 | – | |
| ProSiteProfiles | 191 | 225 | 35 | 11.334 | ||
| TIGRFAM | 194 | 226 | 33 | 1.3E-9 | ||
| ProSiteProfiles | 226 | 260 | 35 | 13.011 | ||
| Pfam | 226 | 274 | 49 | 1.2E-16 | ||
| TIGRFAM | 228 | 262 | 35 | 1.3E-9 | ||
| Gene3D | 254 | 324 | 71 | 8.7E-23 | ||
| ProSiteProfiles | 261 | 295 | 35 | 11.674 | ||
| TIGRFAM | 263 | 296 | 34 | 1.4E-6 | ||
| Pfam | 292 | 321 | 30 | 9.4E-10 | ||
| ProSiteProfiles | 296 | 330 | 35 | 10.983 | ||
| TIGRFAM | 298 | 331 | 34 | 7.8E-5 | ||
| Gene3D | 325 | 397 | 73 | 1.7E-21 | ||
| Pfam | 331 | 379 | 49 | 1.6E-14 | ||
| ProSiteProfiles | 331 | 365 | 35 | 13.8 | ||
| TIGRFAM | 334 | 367 | 34 | 1.5E-9 | ||
| ProSiteProfiles | 366 | 399 | 34 | 10.348 | ||
| TIGRFAM | 368 | 397 | 30 | 2.5E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0189200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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