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LotjaGi6g1v0189300.1

Overview

Field Value
Gene ID LotjaGi6g1v0189300
Transcript ID LotjaGi6g1v0189300.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein family; TAIR: AT1G05670.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi6g1v0189300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48467283..48469065) extracted from Lotus japonicus Gifu genome v1.2.

AGGGAATTGCTTTAATCAAGAAAATTATAGACAAGGGTATTCAGCCAGATATGTGCACATACAATATACTTCTGGATGGA CTATGCAAATGTGGTAGAATTAAGGATGCACAAGAGGTTTTTCAGGATCTTTTTAAAAAAGGCTATAATTTGAATAACTG GACATATAATACTATGATCAATGGACTTTGTAAAGAGGGCTTGTTTGATGAAGCATTGACATTGATGTCGAAAATGGAAG ACAATGGTTGCATCCATGATCCAATAACTTTTGAAACAATTATTTCTGCTCTTTTTGAAAAAGGTGAAAATGATAAGGCA GAGAAGCTTCTTCGTGAAATGATTGCTAGAGATCTATTGTGAAGGTAAAATTAGGTAAGAGGCTTTCTAATTACATGTTA AGTTACTTTTAATATTGATGAGGGCCATCTATTTCTTATTCTTCTAATAGTTACACATAAAAAAGAAGATGAACTAAGCT TTTATTAAATTCAACCAACGAGAACAAGTACTGATATTTTCTTAAAGCTTATCTGTGCTCTTTTTTTAAAAAAAAAAAAC ACTAGAAGGCAAAACAACTTTTCATCAAATGGTTGCTATAGGCTTACTGAAAGGATAAAAGAAGATGAAACATCTCAGTG CAATATCAAATTACATTAATGTTACGGTTGAATTTCTCGGATTGGTTTGTAATTTTTTCATTTATTGATGTTTTACCTTA AAGCTGTTCTGCTGATATTTTGGCTGTCTCATGTTTTTTAAATTAATTGTCATTGTTGTTGGTTGAATTGTGAGACTTAA CATGGCTGTCATCCTTCTCCCCTTGGTAGATTCAATATGCTTTGTTAACTCTTATGAGGATCTTTCCCTTTCTTGCTCGG TAGTAACTTTGGTTTTGAATTCTTGATTGGTGTCATATATGATGATATATTGTCTCTTTTTCCATGAAACAAGCCCAACA ATAACTGAATAGATTGTTTCAATTAATTTTATTCCCAGCTTTAATGATTCATTCTGAAGTTTCCATTCTACAATCAAAAC AGATTCACTTGCTAAAGTTCCCTCTTTTTTCCTTTCCTCTTCAAGTTTCTTTTTTTATTCACGAAAATCACAGCCTTAAT AGCAATATATTAAGATAGCCATCTAACTTCTTACACATTGAGTCATATTATGTTATTCAGGTTATGTATTCCTAGCAAAA GAAATTATTCTAAATAAACTGTGGTATAAATGCTAATGCTTTTTTTTATATCACTTTATATTTTTCTTAACTAAATAGTG TTCGAATCAATTTCTGCAAGATCGGCTAACACTTTCAATTTGCTCCCACTAATTAATGTTTTCATAGTTGCATCCTTCTC ATTGTAAACTTTTGAAATTTCACTTGATGAAATCAGTAAGTTATTAAATCAATGGAAAGTTCTTTCGAGACAGCTTTTCC GTTTAAGCTTAGATCTGTTTTCTTTATACTTCTTTTACACAATCTGATATAGCGATTACTATGCTATATCTGAATAAAAT GACGGGAAATCCGTCATTATTCAAACCTAGTTGGGAGATTTGGTGTCTGTTACTTGCAACCATTGTCTTTTAAGTTATGG TGTTTCTCTAGTTCCAATTTTAGATTTCTAGATTACAAGATCTTTCATCATTAATTTTTAATTTATTTTCTGCTATTTTA TGGCTCTAGGTGTGTTTAAACTTCAAAAAGTAAAAGGTGAAGCAACTTCATTTCCCCCTTGAAATTACATTTGAATTTTC AAGCAATGGAGTAAGGGTCATCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0189300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGCACATACAATATACTTCTGGATGGACTATGCAAATGTGGTAGAATTAAGGATGCACAAGAGGTTTTTCAGGATCT TTTTAAAAAAGGCTATAATTTGAATAACTGGACATATAATACTATGATCAATGGACTTTGTAAAGAGGGCTTGTTTGATG AAGCATTGACATTGATGTCGAAAATGGAAGACAATGGTTGCATCCATGATCCAATAACTTTTGAAACAATTATTTCTGCT CTTTTTGAAAAAGGTGAAAATGATAAGGCAGAGAAGCTTCTTCGTGAAATGATTGCTAGAGATCTATTGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0189300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCTYNILLDGLCKCGRIKDAQEVFQDLFKKGYNLNNWTYNTMINGLCKEGLFDEALTLMSKMEDNGCIHDPITFETIISA LFEKGENDKAEKLLREMIARDLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:1.25.40.10
1 102 102 6.6E-30
IPR011990
ProSiteProfiles
PS51375
1 34 34 11.586
IPR002885
Pfam
PF13041
2 48 47 2.7E-16
IPR002885
TIGRFAM
TIGR00756
2 35 34 2.1E-7
IPR002885
PANTHER
PTHR46128
3 99 97 6.4E-24 –
ProSiteProfiles
PS51375
35 69 35 12.715
IPR002885
TIGRFAM
TIGR00756
38 69 32 6.8E-12
IPR002885
Pfam
PF12854
65 97 33 4.9E-8
IPR002885
ProSiteProfiles
PS51375
70 103 34 9.964
IPR002885
TIGRFAM
TIGR00756
72 102 31 1.6E-4
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0189300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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