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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0196600 |
| Transcript ID | LotjaGi6g1v0196600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GPN-loop GTPase-like protein; TAIR: AT4G12790.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q4V7Z0|GPN3_XENLA GPN-loop GTPase 3; TrEMBL-Plants: tr|A0A199VI62|A0A199VI62_ANACO GPN-loop GTPase 3; Found in the gene: LotjaGi6g1v0196600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49356947..49361142) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTATGCTCAGCTTGTTATTGGTCCTGCTGGTAGTGGCAAGGTAATTCAATTCTTCTTCTATTCACCTTATTTTGA TCTGTTCTGTTAAACTACATGTTAATCTTTGTCAATTAGTCTACGTATTGCTCGAGTTTGCACCAGCACTGTGAAACTAC GCGCCGAACCATACATGTTGTGAACCTTGATCCTGCTGCTGAGAATTTCGACTATCCTGTCGCCATGGGTAAGCGCGATG CGTTGTTTGTCGTGGCTTTGAATTTATTGCTTTGTGGTGGAGCTTGACTGTTTTAGGTTTGGATGGTTGCAGATGTAAGG GAGCTTATTTCCCTGGATGATGTTATGGAGGAGCTCGGATTAGGTCCTAATGGCGGTCTTGTATATTGCATGGAGTATCC TTTATTTCGATATCATTGTTTATTTCCTGCCGCTTTAAACTTCTGTTTTTACTTGAATACTTGTACAAATTATCTCCATC TATTTCTGGTTTTTCCCTTTATTTACTTTTTGTTAGCTACTGAAATTTGTTGCCTTAATAATCATATTTAGACACCTTGA AGAGAACCTAGATGATTGGCTTGATGAAGAGCTGGACAATTATTTAGATGATGATTACTTGGTTTTTGACTGCCCTGGTA TTCACAATCATCTCTATACCTATTTGTGTTTTCATATGTATGTATTGGTATCCACAGATTGCAATTATCAGAGTTTTGTG ATTGTGAGGGGATAATATTGTTACAAAATGCAGTCACATGAGTTTGTTTATGCAAGGCCACAATCAGATTTGGTAGTATG ATGCAACTAATGCTTGTATTAGATTTTTTCCTTTTAGAACAAAACAGTTGTGTGGCCAGTCTGCATAGCCTCAAGTTAAT TTTTGTAAACTTTATCACAAATCTTTTTGGTTCCAACTGACATGACAACATGTGATCACTCTAACTTAATCTTGTAATCT TTTGCAGGTCAGATAGAACTTTATTCACATGTGCCAGTACTTAAGAACTTTGTGGAACATTTGCAACAGAAAAACTTTAA TGTCTGTGTTGTGTACTTACTGGATTCACAGGTTTGTGATAGATTTGCTCAAATCACACTTCTTATTAAGAAACTGACTC TCTCAGTGTTCCTTTCAGAGTCAGACTTCTTACTACTGTAGTCGTATTACCTTTGATTTGATGATTCTAACCAATTTTAG AACATTTCCAGTTCATGACAGATGTGACTAAATTTATAAGTGGATGCATGGCCAGCCTTTCTGCAATGGTTCAACTTGAA TTACCTCATGTCAATATCCTCTCAAAAATGGACCTTGTGACTAACAAAAAAGATCTTGACGAGTAATATATTCAATTAAT TTCTTTCACTAATTTGTTTTGTTCACTTTATTCAGTCAAATTCTAATATATGTATCTTTTTCTCTTAGTTTCTTGGATCC AGAGCCTACCTTTTTACTGTCTGAATTGAATCAACGGATGGCTCCTCAATATGCAAAGCTGAATAAGGCTTTGATTGAAC TGGTGGGCAATCTATGAATTTTTAAGAATTTGGTTGTTCCTATTTGTCAATAGCATTCATTTTGTCGCTTTTCAGTGGTA AACTGTTTATTGAAGTCTGGGTCATAATATGCTTTGCCCTATTTTATTTTCATATTTCAGTAGCAGTTTACTGTTCAGTG GTACAGGTGCTGGGATGTTAAAAAAATATGAGTACTGCTAGGAAATACTAACAACTTCATAAAAAAAATTGGACTAAAGA AAAGATGATTTTATAGATAACGGTCTAATGTGTATTTGAGTTGATTCTTATTCTGAAAAATAAAGATAATACTTGTCTGA TGTTTAGCTAGCATGAACTGTGATTGCTCTCTGAGCAAGAATCAGGGGGAGACACTCCTTCTTTTCGTATGATAATTTGC CTGAGAGCACACCTGATTGTGGACTAATTTAGAAAAAGGGAAACAAATTTACAATGTTGCCAATGAGTGTCCTTTTTAAA AGAAGTAATAAGTCATGTTATATCTGCTACACTGACCCTGTTCTGCTATAATGTCCATGTAGTTCATCACCTTTAGGTAC ACTGCAGACTACAGTGTGCACCTATTAATCACCGTTTTTGAGAAATATGTAATGCTTGCACTCCCTTGAGATATACTAAT AAAAAGTCATGACAAGCTTTTTTGGTATTGTGTATACAATACAAACATAGATGATATATCAATTGAATTATTTAGCTCTA AAGTAAGTGTGGTGCCATAAAGCATCTGGGAATGTTGTCCCTATATATAATTGAAAAGTTATATTGATCTCTCTATCTAG GAATTAGCAACATTTTATTGACATAGCCCCAATTGAAACTTTGTCAATGTTGCAATTCAGGCAGATTAAACATTCCTCCA GATTTTATATCTGTGATCTCTATCAGTGTCATATTTCTCTTCAATTTAATGTTTTTCTTGCAAGAAATTAGGTGACACCA ATCAATAAGTGTGATTTCAGTTTCACAATCTACTATCATCAGGAACCTAAAGTGCGTGTGTAAGTTATGAATATCTTAGG GGGTTTTGCTTCCATTTGTTTTTATTTCTCATTGCACTTTTGTGTAAATATCAAGGGAATGATGTGATGGTTTTACCATT TGCCTATTATAAACTTTAGAAAATAATGAAGGTTCTGTTTGAAATTCCTAACTCATTGCCTTATCACTTACATTTCTGAA CAGACATTCCTAAATATTCTCTTACCACTTAGGCTTCCTAGGATCATTTATTTGAGTTCTGCAATCTTTTTTTTCTTTCT TAATTCCATCAGCTTGTTTATTTATTTATTCATTCCTTCTGTAACAGGTGAACAATTATAGCATGGTGAGTTTTATACCA CTGGACTTGAGGAAGGAAAAAAGGTATAGTCCTCTACATCCTTTAGCTGCTTATCATTGCTGCAGTGCTGCTTGTTCATC ATTTTAGTGATCTGTTATTGTTAGCATATAAGGCATATAATTTGGCTCTAGTTAGTTGTTCCGTGATACTGAGTAAATGC CGTTGAGGATACTGAAATATAAAAATCGAATGACATTTTTTTTAATAGGCAAATGTTAGTTGTTAGTAATGTTAGTAAAT TAGTCCTCCTTAGGGTTCGAACCCTGGAGCCTTCACACTTCATTCCCCCGAACCCTTATGTTACCACTTGAGCTAACCTT CGGGGGCAGTCAATCGAATGACATAAACTGGTGTAGATTATTTTCATGAAAAAAAGTGGTATGAATGAACTATGAAGTTT GAGTTAAATTAGACTGGAAGCCCTTGGCTATAAGTTGATAACTGGTTGCAGGATTTTGGGAAGAATACCAGTGTCAAGCC CAAGAAAACCTGATTGATTTGATTGCCTTCATGACTATTCTATCAAAATTACTTGAACTTTGAATTATGCTCTGGTCTAG GATCAAAATGCCAAATTTGCTGCTTTAAATATGAGTTCAAACTTAAAATAATAGTTGAGAAGCTGCCCACCATTGATGTT TACCGGATAAACAGGGTTTTGGTATATTGGATTGATCAGTGAATTGCAAACTATTTGTTTAACCTCAAATGCAGCTTGCT GATATTGAGAATCAAAGGACGTGAAAGAACTCATTCTTGATTTATTTTCACCAGGCTGTACAGTTGGTTGTGTTTTCATT AATTTGCAAACTTAAGACAAATAGAAATTTCAATTAATCTTAACTAATCAAGTCCAGCTCTTAAATTACCAAAGTGGTGT TTTTTTTTTGATAAGCAAGTGGTGTTTTGGTTAACTATGGGAACTGATTTTTACTTGTCATTGAAACCTGTGCTAGTTGC ATGATTATTGTGTATTTTTCCGTTTCTACTATCCTTTCCAAAGGGGAGTTCAAGTCATTGAAATCTATATATTTAACATC CTCTGTTTGACTGTTCCATTAGCATGGCATACCCCCAAATGAAGTGATTTTTGTTTTATACTTATTATTGGATTGTTTTC AATTGCAGTATTCAATACGTATTGGCTCAAATTGACACCTGCATCCAGTATGGAGAAGATGCAGATGTGAAAGTTAGGGA TTTTGACCCAGAGGATGATGAGTAAAGCTTATCCCCTTCTGCAGCAAGTACTGTCCAGTCTTCACATCTTCGTAATATTT ATCAAACTCAACCTTTTTTATGTATAGTCTGATTAG
CDS sequence (LotjaGi6g1v0196600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTATGCTCAGCTTGTTATTGGTCCTGCTGGTAGTGGCAAGTCTACGTATTGCTCGAGTTTGCACCAGCACTGTGA AACTACGCGCCGAACCATACATGTTGTGAACCTTGATCCTGCTGCTGAGAATTTCGACTATCCTGTCGCCATGGATGTAA GGGAGCTTATTTCCCTGGATGATGTTATGGAGGAGCTCGGATTAGGTCCTAATGGCGGTCTTGTATATTGCATGGAGTAT CCTTTATTTCGATATCATTGTTTATTTCCTGCCGCTTTAAACTTCTGTTTTTACTTGAATACTTACACCTTGAAGAGAAC CTAG
Protein sequence (LotjaGi6g1v0196600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGYAQLVIGPAGSGKSTYCSSLHQHCETTRRTIHVVNLDPAAENFDYPVAMDVRELISLDDVMEELGLGPNGGLVYCMEY PLFRYHCLFPAALNFCFYLNTYTLKRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 94 | 94 | 2.8E-41 | – | |
| PANTHER | 1 | 80 | 80 | 3.9E-42 | ||
| PANTHER | 1 | 80 | 80 | 3.9E-42 | ||
| CDD | 3 | 80 | 78 | 7.83982E-59 | – | |
| Pfam | 7 | 80 | 74 | 1.8E-35 | ||
| SUPERFAMILY | 7 | 83 | 77 | 2.22E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0196600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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