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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0197400 |
| Transcript ID | LotjaGi6g1v0197400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT4G40060.1 homeobox protein 16; Swiss-Prot: sp|Q940J1|ATB16_ARATH Homeobox-leucine zipper protein ATHB-16; TrEMBL-Plants: tr|V7BM41|V7BM41_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0197400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49412856..49414858) extracted from Lotus japonicus Gifu genome v1.2.
AAATGCACTCGACCAATGATCAAAAGACAGTTCATATAACTTTGATATATAACTATAATATCCTAAAAGGGTAGGCTACT TTCATTCAAAAGGTTAGTGCAAGACCTATAATTCACTATAAATTTACCATTCCTCATTCTAGTTGGACTCATGCATCTGA ATGAAGTAATGAACAGCTCACCATGAAGCTGGCTAGGAGGCAGGAGCAGTGACCCAGTGTCTCTCTGAATCTGTGTCTCT TTTGATTAGATAATGATTAGTTAGATAAAAGTGTTGATTGCTTTTCACACCTGTCCTCTCTTGTTTTTCTTGCTGGATTC ACCTTCTCTTGTGATTTGTTTGGTTACATGGGAATTCACCCTGTGGTAAAAAATGAGAATATAAAACCAACTGTTTCTAG GTCTTGAAAGCATCAACAGAACAGGATTATTAAGCAAGCAGTTTTTTTTATCATCTCAACTCACTCTGTTTCCCCAAGCT GGTTTTGTTTCCTACCTTGGTGCTCTGTATCTCTCTGCCTATTATAAAGCACAAAGTGGAGGATCTGCTTTTCTGTCTCT TTTGTTCTCAGTAATGAAGAGGCTAAATAACTCAGATACCATGGCTACTTTGGTTTCCAAGTTCCCATCAAAAGGTCTAG AAGTAATTAAAATATGAGAATCTTATTATCTAATAGGTCCCTTCCTCTGCACCATTCATTCTTCATATTCCCTTACACAT GATTCTCATTCAATCACTTCAAGAATCAAGCCTAATGGAGCAATACCCATAAAACAATTTTTTTTTCTTTCTTTTTTGTG TGTGTGTTTAGTGGTTTAGATTAATTTTTGGTTACAAGCTTTTCAGATTTTGAACATTCCAGTTATGCCTTATGTGGCTA ATTCCAACTTCCTTTCATCCTTAGCATATGCAGGGGTGAAACAGAGGAATGAAACTCAAGGTTACAGTGAAGAATTTCAG GCAATGCTAGATAGATTGGACCAAGAAGACAGTTATGAAGATGTTAGCTTGGTCTTGGAGAAGAAAAGGAGACTCAGATT TGATCAGGTTAAAGCCTTAGAGAGGAGCTTTGAATTGGACAACAAGCTTGAGCCAGAGTACAAGGTGAAGCTAGCAGAAG AACTTGGATTGCAACCAAAACAGGTTGCTATATGGTTCCAGAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGA GATTATGGCATTCTGAAGTCCAACTTTGATCATCTCAAGGTTGAGTATAGTAATCTTAAGCAAGAGAATGAGGCTCTTAC TATGAAGGTATGGCAAATCAATCACTTTGATTGCATAAGCCACTTGAGCTTCTTAATTCTTTACTTTAATGTACAGTTTT TGAATTCTTTGTTGTGTTGTTTGGTGTGTGAATTTTAGGTGAGAGAGTTGAAGGCAAAGTTGATTAGAGTTGAAAGCAAT GAGTCAGAGAAAGATGAATCTCCCAATTCAGAGGTTAGAGACAGAGGAGCTTCAGAGAGCAATTCATGTGGTATGCTTAA GGAGGAAAGCAATGTTGAATCTCCTTTGTGTTTCAATGGATCTTTTCCAAGTTCAAGTCCAGTGAAAAATTGGCTTCATC AATCTGATTCAAAGGGGTCTCCTGATAGAACATTTCAGAATCACTTAATGAGAATGGAGGAGCAGAGTTTCTATAGCATC AATGAATTCTATAGTTTCTTTTCAGTTGATCAATGCCCTACTCTGTAGTAGATTGGATGGATCATTTTGGAGCAATGCTA CTAGCCTACTATCTAAGTTTTCATAATTGAAATCTGATGGGAAATTTCTTGGTTACATATTATTTCCAATTAAATTGAAA TTTATTGTTACTAGTTTGGTATAGAATAGACACACATCATACAAGATCCAAAAATTCCTACTTCAACATGCATCTTTAGT TTATGATGCATTTTCCTCTTTTGATAATGTCTACCAAGAAAATTGAAAGAAATGAATATTAACCACATATGTCTAATATC TTC
CDS sequence (LotjaGi6g1v0197400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGCTAAATAACTCAGATACCATGGCTACTTTGGTTTCCAAGTTCCCATCAAAAGGGGTGAAACAGAGGAATGA AACTCAAGGTTACAGTGAAGAATTTCAGGCAATGCTAGATAGATTGGACCAAGAAGACAGTTATGAAGATGTTAGCTTGG TCTTGGAGAAGAAAAGGAGACTCAGATTTGATCAGGTTAAAGCCTTAGAGAGGAGCTTTGAATTGGACAACAAGCTTGAG CCAGAGTACAAGGTGAAGCTAGCAGAAGAACTTGGATTGCAACCAAAACAGGTTGCTATATGGTTCCAGAATCGTCGAGC TCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTGAAGTCCAACTTTGATCATCTCAAGGTTGAGTATAGTA ATCTTAAGCAAGAGAATGAGGCTCTTACTATGAAGGTGAGAGAGTTGAAGGCAAAGTTGATTAGAGTTGAAAGCAATGAG TCAGAGAAAGATGAATCTCCCAATTCAGAGGTTAGAGACAGAGGAGCTTCAGAGAGCAATTCATGTGGTATGCTTAAGGA GGAAAGCAATGTTGAATCTCCTTTGTGTTTCAATGGATCTTTTCCAAGTTCAAGTCCAGTGAAAAATTGGCTTCATCAAT CTGATTCAAAGGGGTCTCCTGATAGAACATTTCAGAATCACTTAATGAGAATGGAGGAGCAGAGTTTCTATAGCATCAAT GAATTCTATAGTTTCTTTTCAGTTGATCAATGCCCTACTCTGTAG
Protein sequence (LotjaGi6g1v0197400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLNNSDTMATLVSKFPSKGVKQRNETQGYSEEFQAMLDRLDQEDSYEDVSLVLEKKRRLRFDQVKALERSFELDNKLE PEYKVKLAEELGLQPKQVAIWFQNRRARWKTKQLERDYGILKSNFDHLKVEYSNLKQENEALTMKVRELKAKLIRVESNE SEKDESPNSEVRDRGASESNSCGMLKEESNVESPLCFNGSFPSSSPVKNWLHQSDSKGSPDRTFQNHLMRMEEQSFYSIN EFYSFFSVDQCPTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 254 | 254 | 2.7E-72 | – | |
| PANTHER | 1 | 254 | 254 | 2.7E-72 | – | |
| ProSiteProfiles | 52 | 112 | 61 | 15.985 | ||
| SUPERFAMILY | 56 | 114 | 59 | 3.89E-17 | ||
| CDD | 57 | 113 | 57 | 4.33864E-14 | ||
| SMART | 58 | 116 | 59 | 1.1E-13 | ||
| Pfam | 59 | 110 | 52 | 7.5E-15 | ||
| Gene3D | 62 | 110 | 49 | 3.0E-16 | – | |
| PRINTS | 83 | 92 | 10 | 4.7E-5 | ||
| ProSitePatterns | 87 | 110 | 24 | - | ||
| PRINTS | 92 | 108 | 17 | 4.7E-5 | ||
| Pfam | 112 | 153 | 42 | 4.4E-16 | ||
| Coils | 125 | 159 | 35 | - | – | |
| MobiDBLite | 157 | 184 | 28 | - | – | |
| MobiDBLite | 157 | 172 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0197400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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