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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0197400 |
Transcript ID | LotjaGi6g1v0197400.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Homeobox protein, putative; TAIR: AT5G65310.1 homeobox protein 5; Swiss-Prot: sp|P46667|ATHB5_ARATH Homeobox-leucine zipper protein ATHB-5; TrEMBL-Plants: tr|V7BM41|V7BM41_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0197400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49412870..49414760) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGACCTATAATTCACTATAAATTTACCATTCCTCATTCTAGTTGGACTCATGCATCTGAATGAAGTAATGAACAGCT CACCATGAAGCTGGCTAGGAGGCAGGAGCAGTGACCCAGTGTCTCTCTGAATCTGTGTCTCTTTTGATTAGATAATGATT AGTTAGATAAAAGTGTTGATTGCTTTTCACACCTGTCCTCTCTTGTTTTTCTTGCTGGATTCACCTTCTCTTGTGATTTG TTTGGTTACATGGGAATTCACCCTGTGGTAAAAAATGAGAATATAAAACCAACTGTTTCTAGGTCTTGAAAGCATCAACA GAACAGGATTATTAAGCAAGCAGTTTTTTTTATCATCTCAACTCACTCTGTTTCCCCAAGCTGGTTTTGTTTCCTACCTT GGTGCTCTGTATCTCTCTGCCTATTATAAAGCACAAAGTGGAGGATCTGCTTTTCTGTCTCTTTTGTTCTCAGTAATGAA GAGGCTAAATAACTCAGATACCATGGCTACTTTGGTTTCCAAGTTCCCATCAAAAGGTCTAGAAGTAATTAAAATATGAG AATCTTATTATCTAATAGGTCCCTTCCTCTGCACCATTCATTCTTCATATTCCCTTACACATGATTCTCATTCAATCACT TCAAGAATCAAGCCTAATGGAGCAATACCCATAAAACAATTTTTTTTTCTTTCTTTTTTGTGTGTGTGTTTAGTGGTTTA GATTAATTTTTGGTTACAAGCTTTTCAGATTTTGAACATTCCAGTTATGCCTTATGTGGCTAATTCCAACTTCCTTTCAT CCTTAGCATATGCAGGGGTGAAACAGAGGAATGAAACTCAAGGTTACAGTGAAGAATTTCAGGCAATGCTAGATAGATTG GACCAAGAAGACAGTTATGAAGATGTTAGCTTGGTCTTGGAGAAGAAAAGGAGACTCAGATTTGATCAGGTTAAAGCCTT AGAGAGGAGCTTTGAATTGGACAACAAGCTTGAGCCAGAGTACAAGGTGAAGCTAGCAGAAGAACTTGGATTGCAACCAA AACAGGTTGCTATATGGTTCCAGAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTGAAG TCCAACTTTGATCATCTCAAGGTTGAGTATAGTAATCTTAAGCAAGAGAATGAGGCTCTTACTATGAAGGTATGGCAAAT CAATCACTTTGATTGCATAAGCCACTTGAGCTTCTTAATTCTTTACTTTAATGTACAGTTTTTGAATTCTTTGTTGTGTT GTTTGGTGTGTGAATTTTAGGTGAGAGAGTTGAAGGCAAAGTTGATTAGAGTTGAAAGCAATGAGTCAGAGAAAGATGAA TCTCCCAATTCAGAGGTTAGAGACAGAGGAGCTTCAGAGAGCAATTCATGTGGTATGCTTAAGGAGGAAAGCAATGTTGA ATCTCCTTTGTGTTTCAATGGATCTTTTCCAAGTTCAAGTCCAGTGAAAAATTGGCTTCATCAATCTGATTCAAAGGGGT CTCCTGATAGAACATTTCAGAATCACTTAATGAGAATGGAGGAGCAGAGTTTCTATAGCATCAATGAATTCTATAGTTTC TTTTCAGTTGATCAATGCCCTACTCTGTAGTAGATTGGATGGATCATTTTGGAGCAATGCTACTAGCCTACTATCTAAGT TTTCATAATTGAAATCTGATGGGAAATTTCTTGGTTACATATTATTTCCAATTAAATTGAAATTTATTGTTACTAGTTTG GTATAGAATAGACACACATCATACAAGATCCAAAAATTCCTACTTCAACATGCATCTTTAGTTTATGATGCATTTTCCTC TTTTGATAATGTCTACCAAGAAAATTGAAAGAAATGAATATTAACCACATA
CDS sequence (LotjaGi6g1v0197400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGCTAAATAACTCAGATACCATGGCTACTTTGGTTTCCAAGTTCCCATCAAAAGCATATGCAGGGGTGAAACA GAGGAATGAAACTCAAGGTTACAGTGAAGAATTTCAGGCAATGCTAGATAGATTGGACCAAGAAGACAGTTATGAAGATG TTAGCTTGGTCTTGGAGAAGAAAAGGAGACTCAGATTTGATCAGGTTAAAGCCTTAGAGAGGAGCTTTGAATTGGACAAC AAGCTTGAGCCAGAGTACAAGGTGAAGCTAGCAGAAGAACTTGGATTGCAACCAAAACAGGTTGCTATATGGTTCCAGAA TCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTGAAGTCCAACTTTGATCATCTCAAGGTTG AGTATAGTAATCTTAAGCAAGAGAATGAGGCTCTTACTATGAAGGTGAGAGAGTTGAAGGCAAAGTTGATTAGAGTTGAA AGCAATGAGTCAGAGAAAGATGAATCTCCCAATTCAGAGGTTAGAGACAGAGGAGCTTCAGAGAGCAATTCATGTGGTAT GCTTAAGGAGGAAAGCAATGTTGAATCTCCTTTGTGTTTCAATGGATCTTTTCCAAGTTCAAGTCCAGTGAAAAATTGGC TTCATCAATCTGATTCAAAGGGGTCTCCTGATAGAACATTTCAGAATCACTTAATGAGAATGGAGGAGCAGAGTTTCTAT AGCATCAATGAATTCTATAGTTTCTTTTCAGTTGATCAATGCCCTACTCTGTAG
Protein sequence (LotjaGi6g1v0197400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLNNSDTMATLVSKFPSKAYAGVKQRNETQGYSEEFQAMLDRLDQEDSYEDVSLVLEKKRRLRFDQVKALERSFELDN KLEPEYKVKLAEELGLQPKQVAIWFQNRRARWKTKQLERDYGILKSNFDHLKVEYSNLKQENEALTMKVRELKAKLIRVE SNESEKDESPNSEVRDRGASESNSCGMLKEESNVESPLCFNGSFPSSSPVKNWLHQSDSKGSPDRTFQNHLMRMEEQSFY SINEFYSFFSVDQCPTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 219 | 219 | 3.0E-72 | – | |
PANTHER | 1 | 219 | 219 | 3.0E-72 | – | |
ProSiteProfiles | 55 | 115 | 61 | 15.985 | ||
SUPERFAMILY | 59 | 117 | 59 | 3.98E-17 | ||
CDD | 60 | 116 | 57 | 3.31136E-14 | ||
SMART | 61 | 119 | 59 | 1.1E-13 | ||
Pfam | 62 | 113 | 52 | 7.7E-15 | ||
Gene3D | 65 | 113 | 49 | 3.1E-16 | – | |
PRINTS | 86 | 95 | 10 | 4.8E-5 | ||
ProSitePatterns | 90 | 113 | 24 | - | ||
PRINTS | 95 | 111 | 17 | 4.8E-5 | ||
Pfam | 115 | 156 | 42 | 4.5E-16 | ||
Coils | 128 | 162 | 35 | - | – | |
MobiDBLite | 160 | 175 | 16 | - | – | |
MobiDBLite | 160 | 187 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0197400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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