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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0198300 |
| Transcript ID | LotjaGi6g1v0198300.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT4G30360.1 cyclic nucleotide-gated channel 17; Swiss-Prot: sp|Q8L7Z0|CNG17_ARATH Cyclic nucleotide-gated ion channel 17; TrEMBL-Plants: tr|I1JWE5|I1JWE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49487473..49494443) extracted from Lotus japonicus Gifu genome v1.2.
TATGTCAATGTGAGGCCAGTATAATATGTAGAACTTTTCTGTTTCTAATTTCTGTACTGTACATAAGTTGTATAAACATC ATTGTTTTGTTAGTTTAAATTTTAAGAAGTCTTTTTTGAAGGTGTAACATATAGATCATAGCTGATTGAACTTTTTTTTT TCAGATGGTCATATGGTTTATTATACCGGCAACAAGAAGCCCTCAGAGATATCACAATAATAATGCTCTTGCATTGATTG TTTTGCTCCAATATGTTCCAAGGTTATATTTGATGTTTCCACTAAGTTCTCAAATAATCAAAGCAACCGGAGTGGTTACA AAGACTGCCTGGGCAGGAGCTGCGTATAATCTGCTATTGTACATGTTGGCTAGTCATGTATGTTGTTTTAATTGGTTTTA TGCTACCATTTATAACTTTATCTCTCTCACACACGCACAAGCATAGGCTCATTGTTAGGTGAACTCTTTTAAACTTATTG GTTCAAGTCTAATTTTCTGCTATAAAATTATACGGGTCTATTTGGTTGTTGCAGGTTTTAGGGGCAGCTTGGTATCTTCT TTCTGTGGACCGATATACTCATTGTTGGAAATCCTTTTGCAAAAAGGAAACCAGCCCTGAGAATTGCTTTCGTTACCTGG ACTGCAATTATGTTAATCTTCTGCAGCGCGAGATATGGGCAAACAGTACAAATGTATTTAACAGCTGTGATCCCAGTAGT AAAGATAATGACTTTAAGTTTGGGATATTTGAAAATGCAGTAAAGAAGCACGTTGTGTCTACAGACTTTATCCCGAAATA CTTGTATTGTTTATGGTGGGGATTGCAGCAATTAAGGTATGACTCGGGACTTCCATTCTGTAGGTACTAAAGTTTGATTT TATAAATGGTGCATTTGATTAATTCAATTCAAGGTTCACGTTTTGACTTGCTTCACTTTGAGAAGATGATGCTTGCTGCA ATATTACTGATGAAATTATAGGTTTAAGGTGGAAAAGGAGAGAAAGAGAATATAGATACTCTGAATAATATGAGATTATA TTGATATGAGATGTGTGTTATAATACAGAACCCTAAATTCCTGACCCACATATATTACTAATAAGCTAGATCAAGTACTA CTGCAGTACTGCTATATTAGCCAAGCCTTATGGCACTTACTAATTTACTAAGATTCTAACATAATAAAAAATCAATATAT TTCATACTCAACTTAAAGCCTGCTAAGCTTTATGCTTGGTACAAATAAATAAACTCTCAAGAAAATAAACAAAATACAGT GTAGCCTTCAAGAATCATAGCTGGAAAGAAAGTTAAGGCTGTTAGGCAATGTGCACGATGAGCAATGCCGTGAAGATAAC CCAACAAGATGGCTGGAATGAGCTGGTTGGAATGTTGCCTTGACGCAAAGGAAGAGGCACTGCTACAAATATTTGCAGCG TAAACTTTTGATCAAGCAATCATATGCCGCACGACCCAAACTTAATCCAAACAGCATTTGGAATCCTCAAATAAAAATGG TCTCAAATTTGAATTTGGGAATTATGAGAGACTTGATACGTAGGTTTGCATTTTTTTTGCATGATAGGGGCACCTCAATG GTTAGTTGAATGGCCTATGATATGTATTTTATGTGTTATGTGATCCAATTTTCTACATTAGATCAATGCTGGACTATCAT ACTAAACCATCAATATGGCACTGGAAACAAAGATAAGAGCTACTCCAACCTTGGCTTCACTTTCATTATTATCTAGTTCA CAAGAAAGAATTATTTCAGGAGGTGCTTGGTTATGGGTTGGCTCTGTCAGTTTAGTAATAGTGTCAACTTGCTGATGACA TGATAATTTTAGGAATCCGTGATGGAAATAGAGAAAGAAAAATAGTGATTTTATTGCTTGATGAAAAATTAACAAAACAA GGAGAAAGATCTCTTGTCCAAAGGTCTCCCCTTACAAAACCATCAATATGGAGAAACAGAGATAAGAGGTCCTCCCACAT TGGCTTGACCTTCATATTTTAGCTAGTCTACGACAAAGAATGATTTCAAGTGGTTCTTGGTTATGGGTGGTATTAGTTTT GGTGTCATCTTACTGATGAAATGATAATGTTAGGAAACCATGATGGAAATAGATAAAGAAAATAGTGATTTTATTGCTTG ACTGAAAATTAACAGAACAAGGAGAAGGGTCTCTCTTCCAAGGTTTCCCGCTTCTTTTTTGTCTCTCTGTCTTGTGATTC TGCATCTAGTCCAGCAACAGCAGTATCTGGCCCACCATCAAAGGGAGTTGTTGATTAGTCCAAAAAACCATCAAAAAGCC AGTCCTTGAAGTGGTTTCATCAGTAAACTTGTGTTCACGAGCCGCCTTTTTTGTAGCTGTTCGTCACAAAAACAGTGCTA TTCTACTTGTTGCTGGTGTGTTCCTGCTTCCATTTCAGTGTGCAGTTGTTTCTCTCTCCCTCTCCTTATAAAGTCGTTCC TACAGTAACTCCCCCTATTTTTCGAAGAAGATGGCGTCTGAAGCTACCTCTCAAAATTTTCAATCAAGTTAGGAAACTAA ACTGAATGAATTATTCAGATTAGTCTGCATCCATATAACTCTGGTTTCCTGGCCTAGGTTTCTATAAGCATATGGAAAAA CTTTTGATAAGGTTTCAAAAGAGAGTCGCAATTAATGGAAAAAAACTTGAACCAAGCATTTAGCAAATTTCAGAACTTTA AAACCTGTCAAAAGAAGGCTGAAATTGTGTAAAACCTTGTTTGTGGCAGGGAATGGGTAGTTATCTCTTAAATTTAATGT TTGTTAGTCATAGGTGTTATTGTTTGTTGTTCCTCATTCTTTTTAATTTTGTTTGTTTCAGTTCTTATGGACAGAACTTA GACACAAGCACTTTTATTGGAGAAACATCATTTGCCATTGTCATTGCCATCCTTGGTCTTGTACTATTTTCTCATTTGAT TGGGAACATGCAGGTATTTTGCAGATAATTTGCTTTCTGTCTATTTTTATTTATAATTGGCTTAAAAGCACATTTGGTCC CCCACGATTGAGCTTCGTGCAAAATGAGTCCCTAAACTATTTTTTTAGCATTATTAGTCCCTCACGTTATCTCCTGTTAC TACACTTAGTCCTTCTGTTAGATTTTAAACGGTTTTTGCTTTGGTGGAGTTTTTTTAATGACTTGGAGGAGAGAGAAGAA AGTTAACAGGAGAGAGAAGTAGGACATTAGGAGAGAGAGTTGCACATGTTGAGTGCTGACTCTTCAATTTTTTTAAAAAT CTCAATTAATATTTTTTTCAATTAGTAAAAATCTCCCAATTAAAATTCTCAAATCACGTTCAATTTTTTTTCTTTCTCAA ATCCTCATCTGGCTTCTTCATCTTCATAGGTTAAATGTTCTTCATCTTCACCATCCTCAAATCACCTTAGCCGAACCAGC AGACAAACCCCACCAACCCACTGCTCTCGAGCTTCACGGCAAGAAATTCTGCAGCCATCGCGCGTTCTACCTCGGCCAGC CATCGGGTTCTCCTTCTTTCTCATTAATGGTGTTTATTTTCGAGTTTTCTTTCCAGATCTGGGTTCTCCAGATCTAGTGA TGGTGGGTTTGGTGTGGAGGGTTTGATCTGGGTTCTCAATTTTAGTACTCCTGTTTCTGCTGATTTGTTTTCTGATTGGG TTTGGATGCTTGCTGTCTTGTTTTGAGCTCCATGACGATGAATTGCTGTTATGGCTTTTGGTGACAAACTCACTTGGCAT CATCTCTCTTGTTAGAGGGAGAGTTTGGGAGTTTGTGTTGCCCTTCATCTGGTTTATTGCCAGTTTTTTTTCCTTTCTTT TTTGCTGTTTTGTTTCCTTGTCTTTCTTGCGTCTTCTGTCTCATTGTTCTGAGCATGAGTTTCACAAATTGGGGGTTGTG ATTTGGGATGAGGAAACCCTAGATTTGGTTCTCAGCATGAGTTTCTGAGCATTGATTTTAAGGTTTTTGGTAAATTAAAT AGAAGAAGGGGTTGTGTTGATGAATTCTTTTTTCTGGATTTTATGTTTTCAATGATGGAGAAGATGATGAAAATGAAGGA GGAAGGAGATGAAGATTCAAATTTTTTTTATTTTAATTAATTTTGTCAGTTTAAATATTAATAAAAAATTCCATGTAGGC ACAAACCGTTAATTTTCTAACGGAAAAGGGGTAAGGGACCAATACTATTAACAGAGTATAACGTTGGGGATCAAGAATGC TATTTTTAAAGTTTAGGGACTCATTTTGCACGAAGCTCAATCGTGAGGGACCAAATGTGCTTTTAAGCCTTTATAATTTG TATCCAAATTATTTGAAACTTTTCCACACACACACACACACGCATATAGGATTAGTTTGCACAGGTTCAATACTTTCCAA ACTCTTATTACATTCATAATTTTTGATAGAATGTGATTTTTGCAATGTTTTTAAAACCAGATTGGTCATAGAACAGATGA ATGCATTGGGCGAACCGATGACAATTAAACATATATTTTAATATCATAATAATATATCAATTAATAGATTAAAATAAGTG TTAAGAAATTAAGTTAAATTAATTTTGAAATTAATATAAAATGATTATTTATGTCTTATAAGAGGACAAAATTATAAGAA AAAAATAAAAAAATAATGATAGAAATAAAAATTACTAAAAGTGAGAAAATTGAATTTCGTTGGTTTAAACCGGTTCAATA TTGAATTTCGTTGAGTTTCGACCAATTCTCACCGGTTTTGAGATCAACCTAGCCACTTGACCGGTTGCCAGCTCAACCAA TTGAATCGACTGATCTGGTCAGGTATTTACGACTACAGATTTTTGTTAATCTAACTGTTTAATTATAACCATCCATGATA TGTCATGTGTCAACTCTTGTTAAATATAATAACAATTAGAATATAATCAAATAGTTCTTATTTTCATATATTTTAAAAAT ATATAACATTAGTCTTGATGTATTCAATAATTTTGGATTAATCTAAATTTTTATAGATATAATCAATATGATATATCCAA CTATAGATTGGGATGAAGCTACCCAATATAAAATTATTGAATGGTGTAAGGATTTTAAAGTCTTACACTAGTGTAAACTA ATTCCTCCTCTCTCTCTTTAGACTTTTATTCCTATTGAATACATCTTTGCTTATATGATTATACCCCTTTTCTTTCTTGT TTCATTTGTTTGCTTCTTGTTAGGATGATATTTATTTTGTAACATTCCTTGTTAGTAGTGTTCAGTCTTTTCTCAATCCA ATTGGTTTTTTTTTTCATGTCTTTCATTGAGAGATATTTCATTCAGAAGAAAACAGCTTCTACCAACTTAAGATATAGAG AATACAAAATGAAAAATTTCTTGTTTTCTAGGGATTTTTTCCATCTTGGTATTTGAATAATGGTAATATAAGCTATGTAT TCTGTTGATACACAAGGCCAAATATGCAGTTAGCTGACTATCTTGTCCAGAATAATTAGCACTAAAGTTGTATGAGAAGC TTTGTTTACATTTTGATTCTGCTTTGGGATTGCTTCTTTGGTGTAGACATATTTGCAATCAATTACTATAAGGCTTGAAG AGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGATTCCGTGTTAGA CGATTCGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTACGTGCATTGCCTGCTGATCTTCG CCGCGATATTCAACGCCACCTGTGCTTAGACCTTGTTAGACGAGTATGATTTCTGCTGTCTGTTTTAGGTTTACAAGATT CTTCTTTTTTCATAGCAATTGTGACAGTTCACTTAAATTTGTGCTGTCTATATTAATCCTCCTCTGCTCTACCATAATTT GGAGTATAGTTGACACTTGCATTTCTATCAATGGATGGTATTTAGTGATGACTGGTAATATGAGCTCTGCAATTAATTAG TTCTCAAAATGATTCATTGTGGCTCCTGAAGATTTACATCTTTAGTACCATCTGCATTTCAAATTATTATCATGCATCTT AGATGGCTTTAGCACCTGTAGGCTTCTCTTAACTTAGGGAAAGTTCAATGAACAGAAGTTGGATTTGAAGATTGACTCTC CATTAATGCCAGTAAATGTTGTACTGATAATGGGTATAGTATGTACTGTTATAATAAGCATTTAACAAATTTCCCTTTCT ATGTTTTCTAGGTTCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCAATTTGTGAGCGGCTGATATCTTCTCTA AGCACTCAAGGCACCTACATTGTTCGCGAAGGAGACCCTGTAACTGAAATGCTCTTCATTATTAGAGGTAGACTTGATAG TTCCACAACAAATGGTGGTCGGAGTGGTTTCTTCAACTCTATCATATTGAGACCGGGAGATTTTTGTGGTGAGGAACTAC TTTCTTGGGCTTTACTCCCAAAATCAACAGTAAATTTGCCTTCTTCAACCAGGACAGTTAAAGCCCTGAGTGAGGTTGAA GCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTCGCCAACCAATTTAGGCGCCTCCACAGCAAGAAGCTGCAGCACAC ATTTAGATTTTACTCCCACCATTGGAGGACTTGGGCAGCCTGTTTTATTCAGGCCGCTTGGCGTCGATACAAGAAAAGGA TATCTGTCAAAGACCTCAGTTTGAGGGAACCCCTTCCCTTGGATGAGACCGTGGCCAGTGAGAGAGAACATGAAGAGGAA AGGCCTGCTGGTTCAAACACATCTCAGACTAAGTTGAACCTTGGGGTCACAATTCTTGCTTCAAGGTTTGCCGCTAACAC ACGAAGAGGAGCTCTGAAGATTAAAGATGACCTGCCTAAGTTACGGAAGCCTGAAGAACCTGACTTCTCCACTGAAGCTG ATGATGACTAG
CDS sequence (LotjaGi6g1v0198300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCATATGGTTTATTATACCGGCAACAAGAAGCCCTCAGAGATATCACAATAATAATGCTCTTGCATTGATTGTTTT GCTCCAATATGTTCCAAGGTTATATTTGATGTTTCCACTAAGTTCTCAAATAATCAAAGCAACCGGAGTGGTTACAAAGA CTGCCTGGGCAGGAGCTGCGTATAATCTGCTATTGTACATGTTGGCTAGTCATGTTTTAGGGGCAGCTTGGTATCTTCTT TCTGTGGACCGATATACTCATTGTTGGAAATCCTTTTGCAAAAAGGAAACCAGCCCTGAGAATTGCTTTCGTTACCTGGA CTGCAATTATGTTAATCTTCTGCAGCGCGAGATATGGGCAAACAGTACAAATGTATTTAACAGCTGTGATCCCAGTAGTA AAGATAATGACTTTAAGTTTGGGATATTTGAAAATGCAGTAAAGAAGCACGTTGTGTCTACAGACTTTATCCCGAAATAC TTGTATTGTTTATGGTGGGGATTGCAGCAATTAAGTTCTTATGGACAGAACTTAGACACAAGCACTTTTATTGGAGAAAC ATCATTTGCCATTGTCATTGCCATCCTTGGTCTTGTACTATTTTCTCATTTGATTGGGAACATGCAGACATATTTGCAAT CAATTACTATAAGGCTTGAAGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAA GATTTGAGATTCCGTGTTAGACGATTCGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTACG TGCATTGCCTGCTGATCTTCGCCGCGATATTCAACGCCACCTGTGCTTAGACCTTGTTAGACGAGTTCCCTTCTTCTCAC AAATGGATGATCAGCTTCTTGATGCAATTTGTGAGCGGCTGATATCTTCTCTAAGCACTCAAGGCACCTACATTGTTCGC GAAGGAGACCCTGTAACTGAAATGCTCTTCATTATTAGAGGTAGACTTGATAGTTCCACAACAAATGGTGGTCGGAGTGG TTTCTTCAACTCTATCATATTGAGACCGGGAGATTTTTGTGGTGAGGAACTACTTTCTTGGGCTTTACTCCCAAAATCAA CAGTAAATTTGCCTTCTTCAACCAGGACAGTTAAAGCCCTGAGTGAGGTTGAAGCTTTTGCTCTTCGGGCTGAAGACCTC AAGTTTGTCGCCAACCAATTTAGGCGCCTCCACAGCAAGAAGCTGCAGCACACATTTAGATTTTACTCCCACCATTGGAG GACTTGGGCAGCCTGTTTTATTCAGGCCGCTTGGCGTCGATACAAGAAAAGGATATCTGTCAAAGACCTCAGTTTGAGGG AACCCCTTCCCTTGGATGAGACCGTGGCCAGTGAGAGAGAACATGAAGAGGAAAGGCCTGCTGGTTCAAACACATCTCAG ACTAAGTTGAACCTTGGGGTCACAATTCTTGCTTCAAGGTTTGCCGCTAACACACGAAGAGGAGCTCTGAAGATTAAAGA TGACCTGCCTAAGTTACGGAAGCCTGAAGAACCTGACTTCTCCACTGAAGCTGATGATGACTAG
Protein sequence (LotjaGi6g1v0198300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIWFIIPATRSPQRYHNNNALALIVLLQYVPRLYLMFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLL SVDRYTHCWKSFCKKETSPENCFRYLDCNYVNLLQREIWANSTNVFNSCDPSSKDNDFKFGIFENAVKKHVVSTDFIPKY LYCLWWGLQQLSSYGQNLDTSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPE DLRFRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLISSLSTQGTYIVR EGDPVTEMLFIIRGRLDSSTTNGGRSGFFNSIILRPGDFCGEELLSWALLPKSTVNLPSSTRTVKALSEVEAFALRAEDL KFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRISVKDLSLREPLPLDETVASEREHEEERPAGSNTSQ TKLNLGVTILASRFAANTRRGALKIKDDLPKLRKPEEPDFSTEADDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 524 | 524 | 0.0 | – | |
| PANTHER | 1 | 524 | 524 | 0.0 | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SUPERFAMILY | 12 | 213 | 202 | 1.02E-14 | – | |
| Pfam | 15 | 217 | 203 | 5.7E-17 | ||
| Phobius | 21 | 38 | 18 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 39 | 57 | 19 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 58 | 80 | 23 | - | – | |
| Phobius | 81 | 182 | 102 | - | – | |
| Phobius | 183 | 205 | 23 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 206 | 527 | 322 | - | – | |
| Gene3D | 215 | 282 | 68 | 2.0E-15 | – | |
| SUPERFAMILY | 221 | 413 | 193 | 8.77E-37 | ||
| Gene3D | 289 | 409 | 121 | 1.5E-38 | ||
| CDD | 291 | 422 | 132 | 2.98198E-18 | ||
| ProSiteProfiles | 291 | 421 | 131 | 10.971 | ||
| SMART | 291 | 422 | 132 | 3.6E-12 | ||
| Pfam | 314 | 402 | 89 | 3.5E-8 | ||
| MobiDBLite | 461 | 480 | 20 | - | – | |
| MobiDBLite | 461 | 475 | 15 | - | – | |
| MobiDBLite | 505 | 520 | 16 | - | – | |
| MobiDBLite | 505 | 527 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0198300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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