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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0198400 |
| Transcript ID | LotjaGi6g1v0198400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein translocase secy subunit, putative; TAIR: AT2G18710.1 SECY homolog 1; Swiss-Prot: sp|Q9XQU4|SECY_PEA Preprotein translocase subunit SECY, chloroplastic; TrEMBL-Plants: tr|I1KDG6|I1KDG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49495390..49496438) extracted from Lotus japonicus Gifu genome v1.2.
GAGAATGTTGATCTTCTACTTTGGCAGGTAAATAGTTCAGGAGTGATGCCCATCATATTTTCTACTTCATCGTTAGCTCT TCCTGGTACTTTAGCACGCTTCACTGGTTTAAGTCCACTAAAGAGTGCGGCAATGGCTTTGAATCCTGGAGGTATATATT GATCTTTTGTATTTGATAAATATAAATATAGAACACGTGCATTTGGTATGCTATGAAACTCAAATTTAAGAAGTTTTGCT AAAAATGATGTGTGAAGAAATCAAGGCATTGCTATTGCTGATATGAAATCCTATCATGCTTGATTACCCTTATAGTTTTG TTTCTTCATAAATTGATTATGTTTACTTAACTGGATTTTTGTTGTAGGTTCCTTCTATCTTCCATTTAACATATTTTTGA TAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAGCAATTGAAACGTCAAGGTGCT TCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTAATTTTTTCCTTCTCTAGTTTTCTATT CCATGATTTTCTTATTGTTGGTACCCTGTCTTTTCACTCCTGAATATATTTTAGAATTCTACTTCAGTATGCCATCAACT TGCAAGTTTATGCTGATTACTCTTTCAAACATAACCATAAACTAATATAATTTATTAAAGTCATGCTTCTTCACTTTCGT TGTGAGGAGTGGTTGACCTGCTTATGATATCTTTCTACTTGAAATTGCTTATGTTAGTACCATTGTTGAATTCTCTTACA CCAGCATATTTTATGGTACAGGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCGATCTTGGCTGCTGGTCC AGCAGTAGTTGAGCAAACCACACACTTGACTGCATTCCGGGGGTTTGCTGGAACATCTATTCTTATTCTTGTTGGTTGTG CAACAGACACAGCAAGGAAAGTTCAGGCTGAGATTATATCCCAAAAGTACAAGAACATTGAGTTCTATGACTTTGATAAA AAGTATTGA
CDS sequence (LotjaGi6g1v0198400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCATCATATTTTCTACTTCATCGTTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAAGTCCACTAAAGAG TGCGGCAATGGCTTTGAATCCTGGAGGTTCCTTCTATCTTCCATTTAACATATTTTTGATAGCCTTCTTCAACTACTATT ACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAGCAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCA GGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCGATCTTGGC TGCTGGTCCAGCAGTAGTTGAGCAAACCACACACTTGACTGCATTCCGGGGGTTTGCTGGAACATCTATTCTTATTCTTG TTGGTTGTGCAACAGACACAGCAAGGAAAGTTCAGGCTGAGATTATATCCCAAAAGTACAAGAACATTGAGTTCTATGAC TTTGATAAAAAGTATTGA
Protein sequence (LotjaGi6g1v0198400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIIFSTSSLALPGTLARFTGLSPLKSAAMALNPGGSFYLPFNIFLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRP GRSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQTTHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYD FDKKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 153 | 153 | 1.5E-42 | ||
| PANTHER | 1 | 162 | 162 | 7.1E-105 | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 162 | 162 | 7.1E-105 | ||
| Pfam | 1 | 140 | 140 | 6.6E-33 | ||
| SUPERFAMILY | 1 | 147 | 147 | 5.1E-31 | ||
| Phobius | 3 | 12 | 10 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 35 | 18 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 36 | 54 | 19 | - | – | |
| PRINTS | 37 | 59 | 23 | 9.3E-21 | – | |
| Phobius | 55 | 90 | 36 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 91 | 113 | 23 | - | – | |
| PRINTS | 92 | 110 | 19 | 9.3E-21 | – | |
| Phobius | 114 | 118 | 5 | - | – | |
| TMHMM | 119 | 136 | 18 | - | – | |
| Phobius | 119 | 138 | 20 | - | – | |
| PRINTS | 126 | 144 | 19 | 9.3E-21 | – | |
| Phobius | 139 | 165 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0198400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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