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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0198800 |
| Transcript ID | LotjaGi6g1v0198800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT2G23810.1 tetraspanin8; Swiss-Prot: sp|Q8S8Q6|TET8_ARATH Tetraspanin-8; TrEMBL-Plants: tr|I1LVX1|I1LVX1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49559919..49564177) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTAACAAGTGATACCTCCATGATTTGATATAGATGCATGATTAGCCTTCATCAACAACAACAAAAAGTTATTTTCC TTTCAATTAATGGTTAAATTAATCCCTAACGGCTGTCAGATGTAGGGATACCTTGGTTAATTAATCCCTAATTTTTATGA TAGTTTAATTTTAGTCTTTCATAATGAAAAATGAGGTTTAGTAACGGTTTTTGCTGAGCCGCTAAAATCAAATTCCCTTT ACCATGTCATTCACAAGCACGTTTAGGCCAGTGAGTGAGTTCACTCTTGAACCATTGTTGGTAGCAACCAAGATAACGAA ACCACCTCACCATGGTTCGTCTCAGCAACAACCTCATCGGCCTCCTGAACTTCCTCACACTCCTCCTCTCCATTCCCATT CTCGTCACCGGCGTCTGGCTCAGCAAGCAACCCGGCACCGACTGCGAGCGCTGGCTGGAGCGTCCCATCATCGCGCTCGG TGTCTTCCTCCTCCTCGTCTCCCTCGCCGGTCTCGTCGGCGCGTGCTGCCGCGTCTCATGGCTCCTCTGGGTCTACCTCC TCGTCATGTTCCTCCTCATCGTCCTCGTCTTCGCATTCACCATCTTCGCGTTTGCTGTTACCAACAAGGGTGCTGGTGAA GCGCTTTCTGGTAGAGGTTATAGGGAGTATAGGCTTGGAGATTACTCGAACTGGTTGCAGAAGAGGGTGAATAGTACTGG AAACTGGAACAGGATAAGGAGTTGTCTTGGGTCGGGGAAGCTTTGCTCTGAGTTTCGGAACCGGTTTGTTAACGACACTG CGGAGCAGTTCTATGCTGAGAACTTGTCTGCTCTTCAGGTATTCTGGATTTCCATTTCTGGGTGTCTGGTTTTTTTTTAG CATTTAAGTCTTTGTTTTGCAATTTTGAGCTTGATTCTGTGATGGGTTTGTTCCATATTTCTCTAGTTGCATCTTTTCTT TTGTGTTTTGATGTGGGGTTTTGTGAAGTTTTGAGCTTACTTTGTTTCCTTTTTCTGGGGTGGTGGTTGTTGTAGTCTTC ATATCTGAAATTTTGTGCTTGATTCTGCAATATATTTGTTTCAACTTTCTAATGGAGATCTGGTTTTGAGTTGAATTATT GAGTATTTTCGCCTATAGTTTGGTTTTGATGATAGTTTTTCTTTTCGAGGCATCATGGTTACTTTTGATAATATGTTTGT TTCAAATTTCTCTATTTGCATGTTTTTAATGCAGATCTAGTTCTGTGTTGAGATATTGCTATTAGTCTTATCTTCCCCCT TTGGTTTCATTTGATGATAAAGATAGTATTCTTTGGAGGCTTTTATGTTTACTTTTGAGCAAGTTTCTACTGAAGATTAC TTTACAATTTGCTTGTCTCCAGTAGACCCTAAACTTATAGTTGAATTTGAGCTTGTCTCTCTACTCCAGTATATATATGT ATGCCAAGCAGTGTCTTTCGCTTTTTGTCCACCATCTTTAGTTTTTTAAGGTCTCTACTTTGTCTTCTGAATGGTATTTT TCAAATAGATTTCTGGAAAAAAAGTATTATTTGTCAGATCAAATAATGAGCAGGTGGGGTGTGTGTTATTTTATATCTTT GTCTGAAGTCACTTTTTGAAAGATGCTGTTTTAATCTTTGTTTGGTTGTTTGCCTTTGTTGTATTTTTATTTCATCAGCC TTGTTTCCAATGCATTTCTGTCGGAATTTCTTACTTTTTGGCCTATTTTTTTAAGGCATAATGGATGCAAGTTTTCTTAG GCTAAAAGGTGAACTACTTTTTTGTTGTTGATGAGCTCTTTCCAAGTTTTGGGCCAATTAGCAGACTTTGGTTCCTTGTC CCATTTTCGTATGCTTTTCTTTATGTATTATTTCTGGGTTTTGATCAATTTTTTAGAACTTTCTCAACTGAGCATAGGTC CAACTTTTTTGTATTTGGATAACTTGCTTTCGTATGTACACTATGGAGTTACTATCTTGGACTATATGCATTTCTAACCC TTTGTAAGCCAACATTCAATTAGTCTTAACTTCATCAAGTAGTGGATGAATATTTCATAAACTAGTTTAAAGATCAAAGT TTATCAAATGGTGCTTTTCATAAGTTTGAGCACTAATCATTGAGACTCTTTAACGTAATTGATATGTTACTTACACTTAA ATTACTTCCCTTGGCACACAAGTAGGAATGGTTATATTGGTATGTTGTGTTCTACTGCTTTACTTAATGAACATTTTACA TCTGCCAAATTATTTTGTGTGAAACAAAAACACTGAATGTTAGAGTGGCATGTCATGTTCCAAATGACTTGATAACCTAA AGTTTGGTGACACATTAGCTGTAATGATCATTGTTAGAAGTCCCACATTGGCTAGAGATAAGGCCAATCAAGTGTTTATA AGGGTTGTGCAAACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGGTATCAGAGC CTATCCTAGATCCATTTGTTGTGTGGAGACCTCCCATATTTGGGCCACCCGTTGTTGTTCCCACGTTCCAGTCTGTTCAA TCCTGGACGTGAGGGGGTGTGTTAGAAGTCCCACATTGGCTAGAGATAAGGCCAATCAAGTGTTTATAAGGGTTGTGCAA ACCTCAACTCTTGAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGGTATCAGAGCCTATCCTAGATC CATTTGTTGTGTGGAGACCTCCCATATTTGGGCCACCCGTTGTTGTTCCCACGTTCCAGTCTGTTCAATCCTGGACGTGA GGGGGTGTGTTAGAAGTCCCACATTGGCTAGAGATAAGGCCAATCAAGTGTTTATAAGGGTTGTGCAAACCTCAACTCTT GAGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAATCATAATAGTGTTTCATACTATCATTTTGTATGAA AGATAAGTTCTGATGATTGGAGGGGTATGCCATGTTCCGAATGATTTGAAAAGCTACATTAACATCAAAGTATATCAATT GCTTCGCTTAATGGATATTTTGTCCTAGTTACTTTGTATGACACACAACTACTGATTATTATAGCGGTATGTCATGTTTG GTGACTGCTTATCTGTTTGTACCTTAAGCTTTAATAATTTTCTGTGATGCATCTAATGATTATAGTGGTATATCATTTAT CAGTGATTTCCTCTACTAATTATTTTTTCTTATTACTTGAGTTGAGTTAATTTAGAGCCAAATTCTTTCTTATGACAGTT TGTGTTGTCTTGTTTTCAAGACTGGGTTGTAGAATTTACCAATTTATGGCTCAGCTCAATATTCATTGTACATTTCTTCA CTTGCCTGTTTCTTGTAAAATTTGAGGTCTTATGTTGTTTTGTTTGGGTTGTTTTGTGCAGTCTGGGTGTTGTAAACCAT CAAACGACTGTGGATTTACATACCAGGGCCCATCTGTGTGGAATAAGACAGAAGGTGTAAACTATTCAAACCCAGACTGT CATGCTTGGGATAATGACCCCAATGTTCTGTGCTTCAATTGCCAATCTTGCAAGGCTGGATTACTGCAGAACATTAAGAC TGATTGGAAGAAGGTGGCTGTTGTGAACGTCATATTTCTCGTTTTCCTGATTATCGTCTACTCCATCGGTTGTTGCGCCT TCCGGAATAACAGGAATGACAATTGGAAGCGGTAGATCTATAGTAAGCTTGTAGGTTTGGTAGTTTCACGATTTACACAT AATCCAAGACACGTTTGCTAGAACATTTTACGGTGGAACCAAAGATGCTAGCACTATTAGTATGCTGATGGGATTTTGGC CAATTTTCTGGTTTCTATATTGTGTTTATAGGATATGACAGTTTATGCTATTTTCATTGTAAAGTGTCAAGTTTATATTG CACTAGACTACCTACCATATTCACAGTTGTATATTTTGGCTATGTCCATTCTCCAACAGTCTATTCCCATTTCCTAATAT GATCACTTCAGTTTGGTGTTAAAAAGTATTTGTAAAGAAAATAGTAAAAATGTTTTCAGAATAAACTGTCTTTTTGTTTC TCATGATGAGATAGCTTAGCTATACTTTGCAGTTGCACACATTGTGACTCCTACTAGAGCTGAATGCTTAACTATGCTTT ATTGATTTTCTATAGGATGTATGTTAATGTGTTGGCCACAGCCATATGAATTAAGGAATAGATTCTATTAAAACTAGTTA GGTCTTTCAAAGATTGAGG
CDS sequence (LotjaGi6g1v0198800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCGTCTCAGCAACAACCTCATCGGCCTCCTGAACTTCCTCACACTCCTCCTCTCCATTCCCATTCTCGTCACCGG CGTCTGGCTCAGCAAGCAACCCGGCACCGACTGCGAGCGCTGGCTGGAGCGTCCCATCATCGCGCTCGGTGTCTTCCTCC TCCTCGTCTCCCTCGCCGGTCTCGTCGGCGCGTGCTGCCGCGTCTCATGGCTCCTCTGGGTCTACCTCCTCGTCATGTTC CTCCTCATCGTCCTCGTCTTCGCATTCACCATCTTCGCGTTTGCTGTTACCAACAAGGGTGCTGGTGAAGCGCTTTCTGG TAGAGGTTATAGGGAGTATAGGCTTGGAGATTACTCGAACTGGTTGCAGAAGAGGGTGAATAGTACTGGAAACTGGAACA GGATAAGGAGTTGTCTTGGGTCGGGGAAGCTTTGCTCTGAGTTTCGGAACCGGTTTGTTAACGACACTGCGGAGCAGTTC TATGCTGAGAACTTGTCTGCTCTTCAGTCTGGGTGTTGTAAACCATCAAACGACTGTGGATTTACATACCAGGGCCCATC TGTGTGGAATAAGACAGAAGGTGTAAACTATTCAAACCCAGACTGTCATGCTTGGGATAATGACCCCAATGTTCTGTGCT TCAATTGCCAATCTTGCAAGGCTGGATTACTGCAGAACATTAAGACTGATTGGAAGAAGGTGGCTGTTGTGAACGTCATA TTTCTCGTTTTCCTGATTATCGTCTACTCCATCGGTTGTTGCGCCTTCCGGAATAACAGGAATGACAATTGGAAGCGGTA G
Protein sequence (LotjaGi6g1v0198800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRLSNNLIGLLNFLTLLLSIPILVTGVWLSKQPGTDCERWLERPIIALGVFLLLVSLAGLVGACCRVSWLLWVYLLVMF LLIVLVFAFTIFAFAVTNKGAGEALSGRGYREYRLGDYSNWLQKRVNSTGNWNRIRSCLGSGKLCSEFRNRFVNDTAEQF YAENLSALQSGCCKPSNDCGFTYQGPSVWNKTEGVNYSNPDCHAWDNDPNVLCFNCQSCKAGLLQNIKTDWKKVAVVNVI FLVFLIIVYSIGCCAFRNNRNDNWKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 262 | 260 | 2.8E-125 | – | |
| PANTHER | 3 | 262 | 260 | 2.8E-125 | – | |
| PRINTS | 7 | 30 | 24 | 1.3E-5 | ||
| Pfam | 7 | 255 | 249 | 5.4E-34 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 45 | 14 | - | – | |
| PRINTS | 39 | 65 | 27 | 1.3E-5 | ||
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 46 | 65 | 20 | - | – | |
| ProSitePatterns | 50 | 72 | 23 | - | ||
| Phobius | 66 | 71 | 6 | - | – | |
| PRINTS | 66 | 94 | 29 | 1.3E-5 | ||
| Phobius | 72 | 96 | 25 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 97 | 233 | 137 | - | – | |
| Phobius | 234 | 256 | 23 | - | – | |
| TMHMM | 234 | 256 | 23 | - | – | |
| Phobius | 257 | 266 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0198800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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