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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0200700 |
| Transcript ID | LotjaGi6g1v0200700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT4G30810.1 serine carboxypeptidase-like 29; Swiss-Prot: sp|Q949Q7|SCP29_ARATH Serine carboxypeptidase-like 29; TrEMBL-Plants: tr|G7IT50|G7IT50_MEDTR Carboxypeptidase; Found in the gene: LotjaGi6g1v0200700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49740611..49747508) extracted from Lotus japonicus Gifu genome v1.2.
GGAGTATATATCTCCAAGCAAGCAGGCAACAACCATTGAAGCAGAAGCTTGTGATTTTGGCAAATGGCCCAATCTGAGCG GTCTCAAATTTTGGCCATAGCCATAGTTGCCACCCTTTTCCTATGCATCAATTTTGCAACATCATCAGACCCATTTGTTC AGCAACACCATGATAAGGTTGGTAGGCTCCCTGGTCAAAACTTCAACACCAGCTTTGCACACTATTCTGGCTACATCACG GTCAATGACAAAGCTGGGAGAGCACTCTTCTACTGGTTCATGGAGGCTGATCAAGATCCTCAATCCAAACCCCTTGTTTT ATGGCTAAATGGAGGTTGATTGATTTAACCTTAAACTCTACTACTAGTAGTAATCTTCACTAATTGTTTTTTAGCTCAAT TTTGAAATTTTAGTCATGTTTGCTTGTGATAGTTGTTGGATTGGAATAAGGACATAACTTGTTGCTCCTGTAACTTGTGA TGATCAGGCTCTGTTACTACTTACTATTGGGATTGGAATGTAACAAAAATTCTTGGTGGGCTATTTCAGGACCTGGATGT TCGTCCATTGCTTATGGGGAGGCAGAAGAAATTGGCCCTTTTCATATAAAGCCAGATGGCAAGACCCTTTATCTCAATCC TTATGCTTGGAATCAAGGTGAGTGACAACTTACAAGCTGGTCAAATTTTTTTATTTTTTCAATTTCTGTGAATGGTTCCC CCAACAGGGGGAACATCTTCGAGATTTAGTGTGTGTTTGGAAAACTTCTGCAGATCCACGTTTGGCCCCGATCCACGTTT GCAGAAGCAAGAAATAGTTGCTTTTGGATTTCTAGATCCACGTTTGGCCTCTCCAGATTTGAAACCAAACACACACTTAA TGTGTTTGTATTTTCGTTGAACTCAACGTGGATCCACGTGCTCACGTGGCAAAAATCCTCCGTCTCCAATTCATGTTAAG TCAACCTGTTAAATTCTAGCTTTTCTGTTGAAACCTTGAGATGTGTGAAATTACGTTAGCAATTTGACATAACGACAAAC CAAACACACACTTAGATACAATGAATTAACCAAGGAAACCCAGAATTTGAACACCATATTGTGACCCAGATTCTAAAATA TTAGGTCTATTGGTGTTACTGTTTCCACTTGTCTGCTCCTCACTATGTTTAATCCTTGTGAATTTGAGCTTTTTCACCCC CATCTCCATTGATAGTTAAATTTCTAACTGTCCTATGTCTTCCTCTAGAGTTTTCAATGCTTATTTGATAACTACATCTG TGAATATATGCCTACTGCACATATTGTACTCCACAGCTTTTAATGCTTATCTGAGAATGATAAGGGTGAACCTATGCCTA CTGCCATATTGTTTTCACATTCTTTAATGTCTATGTCGTGTTTATATTATCGTAAGCTGCTCAGTATATAACATGTCCTC AAATAGAAACTGTCAAGAAGTTGTCCTTTCTATTGAAATAACTGCAAAAGGAATCTTACTTATGCTTATCATGTACTGGT TTTTATGAGCAGAACTGCAGAAATGAAAAATTAATGAAGAAATAAGCTTCATAAATGCAATTTTGTCTAACCATTTGCGC TTTTTGTAGTTGCCAACATTCTTTTTGTCGACGCTCCTGCTGGAGTTGGATTTTCCTATTCAAATACTTCATCTGACTTG CTAAACCATGGCGATAGGAAGACAGGTAACACTTTTACCAGTTAGCATCCTTCTATTCTCGTTACACACATATGCACATG CCAGTAGAATTAATAAAATTTTATGTGCAGCTGAGGACTCTCTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAG TATAAAGGGAGAGACTTCTTTATCACCGGTGAGAGCTATGCAGGTAAACAAAATTAGTGAGATGAGAACTCTCATTCTGG TAATCTGGTTCATTTACTTTACGTAGGATTTGTAATGTTCTAATTGTATTGGTCAATCTTTAATCCTTGGTTTCAGGGCA TTATGTTCCTCAACTTAGCCAAGTTATTGTGAAGCACAACACAGCTTGTAAAGAAAATGCTATAAATCTGAAAGGTTACA TGGTACTGAATCTACTGATTGCTTTTTTGGAAAAAAGTAATTCCTTGGTTAATGCTTCTTGTCATAAATATTTTAATCAA TATATCTTTGCTGCAGGTGGGAAATGCCCTGTTAGATGATTACCATGATCAACTGGGCTTGTACCAGTTCATGTGGTCAA GTGGTATGATTTCAGATGAAACATACAAGCTCTTGAACCTGCTATGTGATTCTCAGTCATTCATACACCCATCACATTCA TGTGAAAAAATTACTGAAATTGCTAATAAAGAACTTGGGAATATAGATCCATACAGTATCTTTACTCCTGCTTGCCATGC TAATGCTAGCCAGTCAAATCAGACAGTGAAAAGAAAGCATGTGAGTGGACATTTTCTTGTACAGCTCTACAGCTTTCTTA TCTAGGCATTGAATTCAATTTCTTATGGTCTTAAGCACCCCAACATTGCTGCCTGTTGATGATTTTCTTATGTCTCATGG TGCAGTATATGTATATATTTTCCAAAACATATGGTACTGTGAGTGAATGCTATAAATAGCCTATAGTTGTTTTCTGTTGA AGCCAATGTTCTGTTTCAAACTTCCTCTATATCCTATTGTGTCTGACTATGTTTATCACAAGACATTCATTAGTTTTTGG TTTAAATTCGAAGTTAAACCCAAAAATATAGATTGTGAACATATTTCAAATGATAAGAATTTTTCGGCATGCTACAATGT GTCTGAATTATGAGATATTTATTGTGCAGATCCTTATTGATTTGTTATGTCATGAAACAGAGATTTGGCAGACTCGGTGC TGGGTATGATCCTTGCACAGAGAAGCACTCCACTATATACTTCAATCTACCTGAGGTCCAAAGGATTCTTCATGTGGATC CAAATCATAAGCCTGCTAAATGGGAGACCTGCAGGTAATGCGCATTATAGAAACACTTGAAAGTATGGCTATTGAGATAC ATTCTTAATTCATTGCTGGAAAAGGTCAAACAACAAATGAAATGAGGTTTATCATTCTGGTCTATTTTATTAGTAAAAAT AAAAAACATTTTAACACTCAGTTTCTACTGTCTTTAAAATTCTCCTTTTGATTTTGAAACTAAGAATTCAAGAATCCTTA CATCTAAATCATTTGAATATTTTGATAATTGGTAGCATATTTGGAGATTGCAGGCCTAGCCTAATGTGCTTTATTCTACT TCCTTCTATTTCTCTCCATGTTTGCATGTGTTTCATTTCCTTCACCAAATTTACCGAGATTAGAATCCACTTATTCATTA CAGTGAAGTGATAAATACCCACTGGAAGGATTCTCCAAGAACCGTGCTCAATGTTTTTCAAGAACTTATTCATTCGGGAC TGCGGATATGGGTTTTCAGGTTATTCTCATTTTCTAATATATAGACATCCTTGCATATCTGTTTACTCATCCATCTACTG TCCTATATACTTTGCATAAAAGTAATTATAGCCAGTAATGACAAATTAACTTGCAGTAATGATCTGGCACAAAGACAGTT TGCTAATGACTTACAATCAGGGAAAAAAATGCAAATCAAGATTTATCCCAAATTATAAACTTCTTGATTTTACTTCTTAT TTTTAGTATTTGCTTATAGGTTCCTTAGTTGATCAAACGATTGATCATCACAAAATACTTACATGACATGTGGTCAGTTG ATTACCTTATTGTTATGTAATCATCTCATGTATTTACTTTTAGGTCTATTCTTTCAAGTCTTGCATTAATTTAGCTGGTG TTATAATTGATGTGTTATGGATCTCTGACAATTTTTGCCTACTAACATAACTTACATTTTCTGTCCTATATGTTATGTCA GTGGTAATACTGATGCAGTAATCCCAGTAACATCTACTCGCTATAGCATAGATGCTCTCAAGCTTCCAACTGTGAGCCCC TGGCGTCCATGGTATGATGATGAGGAGGTAGGAGGATGGACACAAGAATATGCTGGACTAACGTTTGTAACTGTAAGGGG TGCAGGCCACGAAGTTCCTCTGCACAGACCAAAACTTGCTCTGACATTGTTCAAATCCTTCTTAGCAGGAACCTCCATGC CCAAGCTCGAGCAACTGAGCACCTCGTGAAGTTTGTGTTCACATTTTCATTTCTTTTTACCATGGAATATTCCTCAATAA AATTCTCCCTTGTTCCTCAACTTTTACTCATCACAGTGATTCAGTGTATGGAAATACTTGTTACAAAAAGAATTGGAAAT AAAGGCAAGCGAATTCATTTGATTGGTTACCTTTCCTATATTGTAGCAACTTGTCTTTGTATCTTTTTCAAACATAAAAT TATAGGAAGACAGGTAAGCTTCAGTTTTAGTTAAAATTTTGTTCGTAATATATAGCATTTCTGGTCTGGTTATTCCTCTT GATTTCATTAGTATTTTATATTTAGTCAAACTGCATTTATTGTTAGAGAAAATAAAAACTTTAGTTAGATTAAGATTAGT TAATAGAGAAGAGCAGCTGAAGTACACAATATTAAATTTATATTTGCAGCATGTCAAGCAATGGAGTATCTTATTCTTTT GAAGGCTAGATTGTTTATTCTGGGTTTTTTTGTGTTTTGTTTGCAGTCTTTTCAATTCATATAATCCAAATTTGTTGATG TCAACTGCATAGTATAGAATGGACCTCACCAGCGCCATTTGGAGGAGGTAACAAAGTTATGGGCATAATTTGAATCTTTT TCTTTTTGAAAACTTATTCATTGTGTAGCTGGTGAAGAATATATTTTTCTTTATTTGAGTAGCGGTATCTTGCATATAAT CAGATTAGTGGCTTTACACAAATTGCCATTACCGGACTCTGTTTGTGAGTGTGACACTGACATTGCTTCATGTGCAAATT GGACTCCTATGATGATATATAGTGACTTCTTTTATAAATCAAGCTCCAAATTTCTAGTGTATACTTTCTGTACAATGTAT TTTGTTTGATTGAAATTGTGGGTTCTTGTTATATCACTTTTTTCTAGGTACCCGTAACAAACTTTGGCTCTGTAATGGAA ACCATACACACTGATTCAGCCTACAGGTCCCCGTCGAATAATTTTTTTTGTTGGAGCTAAAACTAAATTGTCTTCAGATC AAACAATCTCCAATAATGACAGAAGAGTTTTGAGAAATTCTGATGACAAGGATCAATTTGATAATTTAAGTGCAGAGGTG AATTTTATATACATGCCCCCTTAGTATTTGTTTTGCACTTTCATGTAAAGCTGTGACTCACAGTGACTGGATTTATTGTG CTGGAACATCTCCAGGATACTATTCTCAGCAATGTGAATACTTTTGAAAGCGTTGACGCTAGCTTCTGCTTTAAGCAATG TGGGCGTGACAGTAAAATAAAGAGAAAAACAAAAAGAAAAAAACGTTTTTTTAGTTCGACTCCGATCACTACCACAGGTT AAGGCTTCCCTCGGGACCATGGGTTGCTTACGGGTGTAATTACAGGCCACTCACCAACGCAATTTTCATATCAGTAGCGG GAATGGAACACAATCTTCTCAGGAAAATGAGTCATTTTTATCAACTGAGTCAACATATGCCGACACTAGAAAACATTTTG GAAATGTCTTGTTATCTACTCAAAAATGAAAGGTTCCATGTTTTTTGCTTTGATTTGTTATGATTTCTTTTGCAATAAAT CCTTAAAATTTGCAATTATGTTATTTTTAGTCTATCAAAGAATACTGAACCGTTCTTACACAGGCACACACCACCGGGAG TCTGTCAAAAATTTTGCTCTGCTAGGGCACAACCCTAAGAGCAGCCGCCACCCCCTTTGGGGGGTCTCCTCCCTCATGGG GGGATCCCCTTCTCCTCTAGGGAGACCTTTTCTTCTGCTTGGTTGATGCCTTCTCCCACAATAGGTGGGTTTTCCTTCCA CTCTAGGTGGATCTCCTACCCAAATAAGTGGGTTTTTCTTTTTTCTCTGTGTGTTGTTTGCCCTTTTCTTCGTCCACCAT GCCCCTGCTGCTACCAACACTGACCACCGTGCCACCTGCTGCGGCGTGGCCACCGGCTCCACCCACCACTGCCTTTATCA TCGCTCGCCCTTTTCACATGCCTGCCATCGTGTTTCCTCCTCGCCGGCCCTTGTCACATGCCTGCCACCACGTCATCCCC CTCTTGCTTCCATGACCGTCAAATCTGCCCTCCTGCATCCGTCTCGTCCGCTCCGTGAACACCAGAGCCGCCATTCTGCA ACCGTCTAAGCCGATGAGTCTCGCCGCTGCTGCCGTTCTCACCGCTGCTGCTTCCAATCTTACCCCTCCATCTCTCTCTT CGTTCTCAGTATTGCAGCTTTGCTGCGGGTGTTTTGGAATCTTCAAAAGTTTCCTGTTTCTCCCCAGATTCTCAGATCTA CAAGATTGACCCCATTTTGTGTTGTTGAAGCCTTGATTTGAGCTTCACTAATAGCTGCATGTTTTGCAACTCCGGCAAAG TCGGTTGTTTTGCTTATGGAAGCGCCGCGTAAAAATGAAGAATAGATTTTAATTGTCGCTTAGAAGTCAATTGATTATCT GTTAATGTTTGGGTTTTAAGGATCTTTTGTATGACCTTTAGGGTTTTGCATCATGCTTTCGCTGGATGTTTCAGCTTGTT AATTTGAGTAGGCATGCCTGTGCTTTATTTTCTTATGTATGTGCATTGCATAATGCTCCTTGAGATTTATTCTCACATGA TGTAAGTGCCGCTGGGTAACCCTTTGGGTATTTATTCCAATCACCTTTGACCAAAAAAAAAAAAAGAATACTGAACCGTC TCATTTTCAAGTATATCG
CDS sequence (LotjaGi6g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCAATCTGAGCGGTCTCAAATTTTGGCCATAGCCATAGTTGCCACCCTTTTCCTATGCATCAATTTTGCAACATC ATCAGACCCATTTGTTCAGCAACACCATGATAAGGTTGGTAGGCTCCCTGGTCAAAACTTCAACACCAGCTTTGCACACT ATTCTGGCTACATCACGGTCAATGACAAAGCTGGGAGAGCACTCTTCTACTGGTTCATGGAGGCTGATCAAGATCCTCAA TCCAAACCCCTTGTTTTATGGCTAAATGGAGGACCTGGATGTTCGTCCATTGCTTATGGGGAGGCAGAAGAAATTGGCCC TTTTCATATAAAGCCAGATGGCAAGACCCTTTATCTCAATCCTTATGCTTGGAATCAAGTTGCCAACATTCTTTTTGTCG ACGCTCCTGCTGGAGTTGGATTTTCCTATTCAAATACTTCATCTGACTTGCTAAACCATGGCGATAGGAAGACAGCTGAG GACTCTCTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGGGAGAGACTTCTTTATCACCGGTGAGAG CTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTGAAGCACAACACAGCTTGTAAAGAAAATGCTATAAATC TGAAAGGTTACATGGTGGGAAATGCCCTGTTAGATGATTACCATGATCAACTGGGCTTGTACCAGTTCATGTGGTCAAGT GGTATGATTTCAGATGAAACATACAAGCTCTTGAACCTGCTATGTGATTCTCAGTCATTCATACACCCATCACATTCATG TGAAAAAATTACTGAAATTGCTAATAAAGAACTTGGGAATATAGATCCATACAGTATCTTTACTCCTGCTTGCCATGCTA ATGCTAGCCAGTCAAATCAGACAGTGAAAAGAAAGCATAGATTTGGCAGACTCGGTGCTGGGTATGATCCTTGCACAGAG AAGCACTCCACTATATACTTCAATCTACCTGAGGTCCAAAGGATTCTTCATGTGGATCCAAATCATAAGCCTGCTAAATG GGAGACCTGCAGTGAAGTGATAAATACCCACTGGAAGGATTCTCCAAGAACCGTGCTCAATGTTTTTCAAGAACTTATTC ATTCGGGACTGCGGATATGGGTTTTCAGTGGTAATACTGATGCAGTAATCCCAGTAACATCTACTCGCTATAGCATAGAT GCTCTCAAGCTTCCAACTGTGAGCCCCTGGCGTCCATGGTATGATGATGAGGAGGTAGGAGGATGGACACAAGAATATGC TGGACTAACGTTTGTAACTGTAAGGGGTGCAGGCCACGAAGTTCCTCTGCACAGACCAAAACTTGCTCTGACATTGTTCA AATCCTTCTTAGCAGGAACCTCCATGCCCAAGCTCGAGCAACTGAGCACCTCGTGA
Protein sequence (LotjaGi6g1v0200700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQSERSQILAIAIVATLFLCINFATSSDPFVQQHHDKVGRLPGQNFNTSFAHYSGYITVNDKAGRALFYWFMEADQDPQ SKPLVLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYAWNQVANILFVDAPAGVGFSYSNTSSDLLNHGDRKTAE DSLIFLLKWFERFPQYKGRDFFITGESYAGHYVPQLSQVIVKHNTACKENAINLKGYMVGNALLDDYHDQLGLYQFMWSS GMISDETYKLLNLLCDSQSFIHPSHSCEKITEIANKELGNIDPYSIFTPACHANASQSNQTVKRKHRFGRLGAGYDPCTE KHSTIYFNLPEVQRILHVDPNHKPAKWETCSEVINTHWKDSPRTVLNVFQELIHSGLRIWVFSGNTDAVIPVTSTRYSID ALKLPTVSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMPKLEQLSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 10 | 22 | 13 | - | – | |
| PANTHER | 13 | 464 | 452 | 2.7E-233 | ||
| PANTHER | 13 | 464 | 452 | 2.7E-233 | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 471 | 444 | - | – | |
| Gene3D | 31 | 303 | 273 | 1.7E-106 | ||
| SUPERFAMILY | 40 | 462 | 423 | 1.29E-129 | ||
| Pfam | 43 | 458 | 416 | 4.0E-141 | ||
| PRINTS | 120 | 132 | 13 | 9.8E-30 | ||
| PRINTS | 133 | 143 | 11 | 9.8E-30 | ||
| PRINTS | 169 | 194 | 26 | 9.8E-30 | ||
| ProSitePatterns | 183 | 190 | 8 | - | ||
| Gene3D | 316 | 462 | 147 | 8.3E-38 | – | |
| PRINTS | 429 | 442 | 14 | 9.8E-30 | ||
| ProSitePatterns | 429 | 446 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi6g1v0200700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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