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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0202900 |
| Transcript ID | LotjaGi6g1v0202900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT5G57940.1 cyclic nucleotide gated channel 5; Swiss-Prot: sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5; TrEMBL-Plants: tr|A0A151T053|A0A151T053_CAJCA Putative cyclic nucleotide-gated ion channel 5; Found in the gene: LotjaGi6g1v0202900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50037067..50040551) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGGAACTATGGAACATGACATCTTTTTGTGGATTCTTTTCATTTATTTCTCTAGGTTTGGTGACTTGGATTCTAGCC TATCTTCATCTTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCGTGGAAGTAGT ACACCCTCTAGGTCTTTTAAAAGAGGAATGAAAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGG GGTATCTAAGGCTGTATTCCCGGAAGATCTTAAAGTATCAGAGAAGAAGATATTTGATCCTCAAGACAAGTTTTTGCTCT TGTGGAACAAGCTTTTTGTTATCTCATGCATTTTGTCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATTAAT GATTCATTACTCTGTCTTGGTATAGACCGGAAGTTAGCAATTATAGTTACCACCTTGAGGACAGTTATCGATGCTTTCTA TCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGA TAGATCCTGCACAGATAGCTAAACGGTACTTACAGCGATATTTCATCATTGATTTCTTATCAGTGTTGCCATTACCACAG GTCAATATTTCTTCATTGATTTCATATCATTCATTTGAAAAAATTGACAATATGTATTTTAAGTCTTTTATCACGTAAAT TGTCATCATTGCAACAGCAACTTTATGGAGTATGGAAATATTTAAGCCTTCTTTTCCTTCTATTTTCTTGCATTCAGATT GTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTTGCAACCAAGCAGGCCTTGCTTTTCCTTATCTTGCT TCAGTACATTCCTAGATTTCTCCGGATGGTACCATTAAGTTCGGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTG CTTGGGCAGGTGCTGCAAATTATTTGCTATTGTTCATGCTTGCCAGTCATGTAAGTTCTGCTTTGTTTCTTAGTTTTATT TTTTGTTCAACTTTTGAGTTATTGTACCTGCAGTTCACTAGTATTTTTGCTACCTAGCTTTATGGCGACCAACTCTTGCA GGAATTTATTTAACGTCATTTTCCATCAATTATTCTTTGCAGATAGTTGGATCTTTTTGGTACTTGTTAGCTGTTGAACG CAACGACTTTTGCTGGCAGAAGGCTTGTAGTGATGATGGATACAACAAGAAATTCTTGTACTGTGGCAACCAATACATGG AAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGCTATTCTTACATCACAGTGCTCTGCAGATGATGATAATCCACCTTTT GACTATGGAATTTTCCAACAAGCCTTGTCATCCGGTATTGTTTCATCTAAGAAGTTCTTTTCCAAGTACTGTTACTGTTT ATGGTGGGGGCTCCAGAATTTGAGGTATTGAATTTTATTTTCTATGGTGATTCTCATCACGTGTCATGTAAAAAACAAAA CAAAACAAAACATCAAGACATATATATGTTCTGTCCGAACTGAGTACATTCCAAGTCCTTGAATTTTATCATTTTATTTT CATCGAATATTTGGTTATAGGTTCAATGTGAAAACATTCTGACTACATTTCTGGGTATATACTTGTTTGAATTGTTTACT TTTTCAGACGCTAATTTTAGACATTAGATGTTCACTGAAATTGTGTTTTTTACTCCCAACGATTAGTGTTGGCTGTAAAG TGATATTTGTTCCTGTATGTGATGTTCTTTCCATTTCATGGCTCACTAAGATTATTCAGATGCCCATACTCATAGTTTAT TCATTTATTCCACTGCAGTACTCTTGGCCAAGGGCTTCAAACTAGCACTTATACTGGGGAGATTATCTTTTCAATAGCAT TAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGGTATACTTACCAATTACTAACATGTCGAGA ATAAGCATATGGATGGACGATGGTTTTGGATCTTTAGGAGAATGTCTAGTCTGTTCTATGGATTTGCTTCAGTTTCTCTT AATTCATTCCTTAGTTTTTGGCTCATGTAAATAAGCCAATATCTGTGCCACCCAGATTCCGTGGAGAGATCAGTGGAAGT TATTTGTTTGTTTCTAGATGTTTCTCCTTATCAAAGACTCTCTTTGTAAATAGCTTTCAAGGTTTATGTTCACCAAAGCA TGAAAAGCTAACTATTTGTTACCGTTCCTGTGGTTTCTTTCTTTTCATGTTTGCAGACTTATCTCCAGTCTCTTACCATT AGGCTTGAGGAAATGAGAATCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTCAGAGA GCGTGTGAGACGATATGATCAATATAAGTGGTTAGCAACACGAGGTGTAGATGAAGAAATTTTAGTTCAGAGTCTCCCAA AGGATCTTCAAAGAGACATTAAGCGTCACCTCTGCCTAGCTTTAGTTAGAAGGGTATGCTATCAACAACTTGAAAATTTG CAAAACACCATGAAGGGCCCTCTGTCAAATTTTCAGTTAAAAAAGTCCCAAAATTACTGGAATTAAGCAATTAATGACAG GCCTAGAGTAGAGCACCTATATTACTGGAAGTAAATATGAGATCTTTTAGGCTTATATTTTTCAGAATTGTTCTCACTCT TAAATTTATCTCACCAAATTGGTTCCTGAGCATCTGAATTTGTTAACATATTAATTTCCTTTCTCTGATTTGTAGGTTCC ACTATTTGAGAACATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCAAGTTTATTTACGGAGAGTACTT ATATTGTCCGGGAAGGAGATCCAGTTGATGAAATGCTTTTCATCATACGAGGCCGCCTTGAGAGTGTCACCACAGATGGT GGGAGAAGTGGATTTTTTAATCGCAGTTTTTTAAAAGAGACTGACTTTTGTGGTGAGGAGCTTTTAACCTGGGCACTGGA TCCCAAAACTGGCTCTAACCTCCCGTCATCTACTCGAACAGTTAAGGCTTTAACAGAAGTTGAGGCTTTTGCTTTAACTG CTGAAGAGCTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGCAGACAGGTTCAGCACACCTTCCGCTTTTACTCC CAACAATGGAGGACCTGGGCTGCATGCTTCATTCAAGCAGCATGGCGTCGCTATTCCAAAAGGAAAATTATGGAGCTTCG TCGAAAGGAAGAATCAGAGGAGTCAGAAGGAACCCGCAGCAATGCTGGTGGCAGTTCATACAGCCTTGGTGCCACCATCT TGGCCTCAAGATTTGCCGTGAATGCTCTTCGTGGGGTGCATCACAATCGGAATGCTAAGACTGCTAGGGAGTTGGTCAAA CTACAGAAACCTCCAGAGCCTGACTTTACTGCTGATGATATGTAA
CDS sequence (LotjaGi6g1v0202900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACATGACATCTTTTTGTGGATTCTTTTCATTTATTTCTCTAGGTTTGGTGACTTGGATTCTAGCCTATCTTCATC TTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCGTGGAAGTAGTACACCCTCTA GGTCTTTTAAAAGAGGAATGAAAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAAG GCTGTATTCCCGGAAGATCTTAAAGTATCAGAGAAGAAGATATTTGATCCTCAAGACAAGTTTTTGCTCTTGTGGAACAA GCTTTTTGTTATCTCATGCATTTTGTCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATTAATGATTCATTAC TCTGTCTTGGTATAGACCGGAAGTTAGCAATTATAGTTACCACCTTGAGGACAGTTATCGATGCTTTCTATCTTATACAC ATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCTGC ACAGATAGCTAAACGGTACTTACAGCGATATTTCATCATTGATTTCTTATCAGTGTTGCCATTACCACAGATTGTGGTTT GGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTTGCAACCAAGCAGGCCTTGCTTTTCCTTATCTTGCTTCAGTAC ATTCCTAGATTTCTCCGGATGGTACCATTAAGTTCGGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCTTGGGC AGGTGCTGCAAATTATTTGCTATTGTTCATGCTTGCCAGTCATATAGTTGGATCTTTTTGGTACTTGTTAGCTGTTGAAC GCAACGACTTTTGCTGGCAGAAGGCTTGTAGTGATGATGGATACAACAAGAAATTCTTGTACTGTGGCAACCAATACATG GAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGCTATTCTTACATCACAGTGCTCTGCAGATGATGATAATCCACCTTT TGACTATGGAATTTTCCAACAAGCCTTGTCATCCGGTATTGTTTCATCTAAGAAGTTCTTTTCCAAGTACTGTTACTGTT TATGGTGGGGGCTCCAGAATTTGAGTACTCTTGGCCAAGGGCTTCAAACTAGCACTTATACTGGGGAGATTATCTTTTCA ATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACTTATCTCCAGTCTCTTACCAT TAGGCTTGAGGAAATGAGAATCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTCAGAG AGCGTGTGAGACGATATGATCAATATAAGTGGTTAGCAACACGAGGTGTAGATGAAGAAATTTTAGTTCAGAGTCTCCCA AAGGATCTTCAAAGAGACATTAAGCGTCACCTCTGCCTAGCTTTAGTTAGAAGGGTTCCACTATTTGAGAACATGGATGA GAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCAAGTTTATTTACGGAGAGTACTTATATTGTCCGGGAAGGAGATC CAGTTGATGAAATGCTTTTCATCATACGAGGCCGCCTTGAGAGTGTCACCACAGATGGTGGGAGAAGTGGATTTTTTAAT CGCAGTTTTTTAAAAGAGACTGACTTTTGTGGTGAGGAGCTTTTAACCTGGGCACTGGATCCCAAAACTGGCTCTAACCT CCCGTCATCTACTCGAACAGTTAAGGCTTTAACAGAAGTTGAGGCTTTTGCTTTAACTGCTGAAGAGCTAAAATTTGTTG CCAGTCAGTTTAGGCGCCTTCACAGCAGACAGGTTCAGCACACCTTCCGCTTTTACTCCCAACAATGGAGGACCTGGGCT GCATGCTTCATTCAAGCAGCATGGCGTCGCTATTCCAAAAGGAAAATTATGGAGCTTCGTCGAAAGGAAGAATCAGAGGA GTCAGAAGGAACCCGCAGCAATGCTGGTGGCAGTTCATACAGCCTTGGTGCCACCATCTTGGCCTCAAGATTTGCCGTGA ATGCTCTTCGTGGGGTGCATCACAATCGGAATGCTAAGACTGCTAGGGAGTTGGTCAAACTACAGAAACCTCCAGAGCCT GACTTTACTGCTGATGATATGTAA
Protein sequence (LotjaGi6g1v0202900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHDIFLWILFIYFSRFGDLDSSLSSSSDAGVKTCGFSIDKLSHGGRGSSTPSRSFKRGMKKGSEGLKSIGRSLGFGVSK AVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILSVSVDPLFFYLPVINDSLLCLGIDRKLAIIVTTLRTVIDAFYLIH MALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKQALLFLILLQY IPRFLRMVPLSSELKRTAGVFAETAWAGAANYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDDGYNKKFLYCGNQYM EGYSAWQNRSKAILTSQCSADDDNPPFDYGIFQQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYTGEIIFS IALAIAGLILFALLIGNMQTYLQSLTIRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEEILVQSLP KDLQRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPSLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN RSFLKETDFCGEELLTWALDPKTGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWA ACFIQAAWRRYSKRKIMELRRKEESEESEGTRSNAGGSSYSLGATILASRFAVNALRGVHHNRNAKTARELVKLQKPPEP DFTADDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 107 | 107 | - | – | |
| PANTHER | 46 | 724 | 679 | 0.0 | – | |
| PANTHER | 46 | 724 | 679 | 0.0 | – | |
| SUPERFAMILY | 96 | 423 | 328 | 7.72E-36 | – | |
| Pfam | 104 | 427 | 324 | 4.7E-36 | ||
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 108 | 129 | 22 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 159 | 19 | - | – | |
| TMHMM | 142 | 164 | 23 | - | – | |
| Phobius | 160 | 196 | 37 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 197 | 217 | 21 | - | – | |
| Phobius | 218 | 228 | 11 | - | – | |
| Phobius | 229 | 248 | 20 | - | – | |
| TMHMM | 231 | 250 | 20 | - | – | |
| Phobius | 249 | 268 | 20 | - | – | |
| Phobius | 269 | 290 | 22 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 291 | 396 | 106 | - | – | |
| TMHMM | 397 | 419 | 23 | - | – | |
| Phobius | 397 | 415 | 19 | - | – | |
| Phobius | 416 | 727 | 312 | - | – | |
| Gene3D | 426 | 492 | 67 | 1.2E-12 | – | |
| SUPERFAMILY | 431 | 621 | 191 | 7.73E-35 | ||
| Gene3D | 499 | 619 | 121 | 9.2E-43 | ||
| SMART | 501 | 632 | 132 | 9.3E-13 | ||
| ProSiteProfiles | 501 | 631 | 131 | 13.435 | ||
| CDD | 501 | 632 | 132 | 3.3016E-18 | ||
| Pfam | 522 | 612 | 91 | 9.4E-8 | ||
| ProSiteProfiles | 637 | 666 | 30 | 6.87 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0202900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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