Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0203600 |
| Transcript ID | LotjaGi6g1v0203600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A0D2NIS0|A0A0D2NIS0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi6g1v0203600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50102581..50105062) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTGGTCTGTGGAAACCGTGTGGCTCTTTGAAGTTTGAACACGCTTTTGTTTTTCAGACATTCCAATTTCCTTTTTC ATAAAAGGTTATACCCAGTGTCCACCGTTTTGTTTTCGTGATGGGGCGTTCCAGAGGAAGAAAGAACAAGAGCAAGAAGA AGAAGAAGAAGGAGAAAAAGCCTAACTGGCTTGAACTTCCATTAGACGTGACTGCAAAGATACTACACAACCTTGGTACC GTTGAAGTCGTGAAGACTGCATGTCATGTGTGTTCTCTATGGCGGAACATCTGCAAGGACCCTCTCATGTGGCGCACCAT TGATATTCCGGCCAGCCCTGCAACTTCACGTTCTTGTTCGGTTAACGTATGTCGCTTTGCCGTTGACCAGAGTTGCGGTC TTCTCCAAGAAATCAATATTGAGCTTTTTGGCACTGATGTTCTGCTCAAATACATAGCTGATAGGTAATATATATATCCA TCGATCATCATTTTATTTTTGTTTTCTCTAGCTCTTATGCTTCGTGATTGAGCTGGGAACAACTAGTATAGGCAGTTTCT ACTTATATTTTCTATGGTCGTCGTGGAGAATGGAGATATTTATAATCTTTTGGTGGTGCTTAATTTTCAAAGTATCATAT TATCTTGGGCATTAATTTTGGTAACAAATTATACACCGCAAAATTGCGCAATACAAAACATACCTTCCGCAATCATATTT GCGCAAAAATTCAAAATAAAGGATGATATAAGAATGTAAAGGGGTGGTACCAAAATTAATCCATGTTATCTTAGGTACAC TTACAAATGAGGTGTTTTTTATTTTTAATAAAAAATGTAGAATAGAAAGAAAACACTCGAAACAATTGTGTAAGGTCGTT CAATTCCTATCATGCTTAAAGACCAGCAGAGATTTAATCTTAGATAGAAGCGCCAGGAAATATTCTTGAAAGAGTACCCA CCAAATAAAATTTACTAGAGATAGGGATCTCCCTCATGTGTTTTTATTACACTCCTATTATAACATGATACTTAGGTTGA AAAATAACAAATCAATGGAAGTTAAATATTACGAATGTTAGTGGGTAAGGTTTTTTCTTAGGCAAAGACATCAACAATAC ATTTAGAATTGTACTCAATTGGTGTTGACATCCATAGTGCGTAAGAAAGAAAAGACATAGAGTAATGAGTCATAATACAT TCATTTCATTTTCACTTTACCTTTTATCTATTTCTATTCTTTTTTAGTCACATCACTAATCATGTTCTTTCTTTTCTTTG TATCTCTTTCTTCTCTCTACACCATTCACACTTATTAAAGAGTATTAATCAAACTTAACTAAAGAAGACTAGGCGTGATA TATAATGTACTTTGATAGGATAAGAATGAGAAATAAAGAAAAAAAATGTGTACGCCAGATGTGTATAAATAGTTGGGGTC TAGGTTTAGCCGTTTATGGATGGATTTAGTCCGCGAAAATCCCTCAAACTCAATCAATATCAACACCATGTCATGACCGT TTAGGTTTGGTTGATTTTGTTAAAAAAGAAAGTAGGTTTCTGAGTATACTGATTTATATATCATCTTATACTTTTAACTT CTTACAAATTTTACAGAGCAACTCACCTACGACGCCTACGCCTTTACAAATGTTGGGCAGTTTCAGAAAGAGAGTTGATT CAAGTCGTAAAGAAACTTTCTCTATTAGAGGAGATTGACCTTTCATTTTGCTACCTATCTAGACATGCACTTGAAGTTAT TTGCCGATGTTGCCCTCATTTGAAAGTGTTGAAATTCAACAAGAAGAGAGCATATGAGTGTTTCAAGAATAATAATGTGG CATTTGCTATTGCAAAAACATTGCATGAGCTTCGTCATCTCCAGCTCCTGGGAAACTGTCTCACAAATGATGGCTTGCTT GCCATTCTTGATGGATGCCCTCACCTTGAATCACTTGACCTGCGAGCTTGTTCTAATGTTGATCTGAGTGGAGCTTTGGG GGAAAGGTGTCATAAACAGATAAAAAAATTGCTGCTTCCATATGAAGATCTAGATGATATTTACTGCAATGATATTGATG AGGATGGTGGTAACTATTATTATGATGATGAACGTGATCTTTGGGTGTCATTCTAAATGGCATGATTTATTATTATTTTT CTTGTTTGCTATGGAGATTTGGAGCTATGTAGACCGGGAATGGGAGATGTCCTTGTGTCGTATCCCGCAAGAATGCAATT CAGTGGCGGATCACATTGCGAAGGTCATTGCTAGAACCTTGAATCAGGAGTTTTGGGTAATTGATATTCCTTCCTTTGAG TTGAAAACCCATTTGCTTTGTGATGCGCTTTCTGTAGTGTAGTGTGTCTTTGTTTGTTAGTTTTCCGATGGAGAAAAAAA TATGAATATTGTTTAATTTTTTAAGGTTTTGTTTTAATTTCCTCCGATTTCATAATTTGGGCATCAATCCATGATCCTTC AC
CDS sequence (LotjaGi6g1v0203600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCGTTCCAGAGGAAGAAAGAACAAGAGCAAGAAGAAGAAGAAGAAGGAGAAAAAGCCTAACTGGCTTGAACTTCC ATTAGACGTGACTGCAAAGATACTACACAACCTTGGTACCGTTGAAGTCGTGAAGACTGCATGTCATGTGTGTTCTCTAT GGCGGAACATCTGCAAGGACCCTCTCATGTGGCGCACCATTGATATTCCGGCCAGCCCTGCAACTTCACGTTCTTGTTCG GTTAACGTATGTCGCTTTGCCGTTGACCAGAGTTGCGGTCTTCTCCAAGAAATCAATATTGAGCTTTTTGGCACTGATGT TCTGCTCAAATACATAGCTGATAGAGCAACTCACCTACGACGCCTACGCCTTTACAAATGTTGGGCAGTTTCAGAAAGAG AGTTGATTCAAGTCGTAAAGAAACTTTCTCTATTAGAGGAGATTGACCTTTCATTTTGCTACCTATCTAGACATGCACTT GAAGTTATTTGCCGATGTTGCCCTCATTTGAAAGTGTTGAAATTCAACAAGAAGAGAGCATATGAGTGTTTCAAGAATAA TAATGTGGCATTTGCTATTGCAAAAACATTGCATGAGCTTCGTCATCTCCAGCTCCTGGGAAACTGTCTCACAAATGATG GCTTGCTTGCCATTCTTGATGGATGCCCTCACCTTGAATCACTTGACCTGCGAGCTTGTTCTAATGTTGATCTGAGTGGA GCTTTGGGGGAAAGGTGTCATAAACAGATAAAAAAATTGCTGCTTCCATATGAAGATCTAGATGATATTTACTGCAATGA TATTGATGAGGATGGTGGTAACTATTATTATGATGATGAACGTGATCTTTGGGTGTCATTCTAA
Protein sequence (LotjaGi6g1v0203600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSRGRKNKSKKKKKKEKKPNWLELPLDVTAKILHNLGTVEVVKTACHVCSLWRNICKDPLMWRTIDIPASPATSRSCS VNVCRFAVDQSCGLLQEINIELFGTDVLLKYIADRATHLRRLRLYKCWAVSERELIQVVKKLSLLEEIDLSFCYLSRHAL EVICRCCPHLKVLKFNKKRAYECFKNNNVAFAIAKTLHELRHLQLLGNCLTNDGLLAILDGCPHLESLDLRACSNVDLSG ALGERCHKQIKKLLLPYEDLDDIYCNDIDEDGGNYYYDDERDLWVSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| SUPERFAMILY | 9 | 69 | 61 | 4.06E-11 | ||
| PANTHER | 9 | 253 | 245 | 1.0E-88 | – | |
| PANTHER | 9 | 253 | 245 | 1.0E-88 | – | |
| Gene3D | 16 | 271 | 256 | 4.7E-36 | ||
| ProSiteProfiles | 20 | 67 | 48 | 9.418 | ||
| Pfam | 23 | 69 | 47 | 2.7E-8 | ||
| SUPERFAMILY | 82 | 237 | 156 | 5.89E-18 | – | |
| SMART | 92 | 115 | 24 | 190.0 | ||
| SMART | 116 | 141 | 26 | 93.0 | ||
| SMART | 142 | 166 | 25 | 200.0 | ||
| SMART | 197 | 221 | 25 | 250.0 | ||
| SMART | 222 | 245 | 24 | 79.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0203600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…