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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0204400 |
| Transcript ID | LotjaGi6g1v0204400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-specific serine/threonine protein kinase; TAIR: AT4G30960.1 SOS3-interacting protein 3; Swiss-Prot: sp|O65554|CIPK6_ARATH CBL-interacting serine/threonine-protein kinase 6; TrEMBL-Plants: tr|V7AXV8|V7AXV8_PHAVU Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi6g1v0204400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50169259..50170590) extracted from Lotus japonicus Gifu genome v1.2.
GCGATGGCTGACAAATCCAGTAGCAGTAACGATGTGAGCTCCACATTGCTCCATGGCAAGTACGAGCTAGGCCGTCTTCT CGGCCATGGAACATTCGCGAAGGTGTACCACGCGCGGCACCTTGAGTCCGGCCGGAGCGTGGCGATCAAGGTGGTGGGGA AGGAGAAGGTGATCAGAGTCGGCATGATGGAGCAGATCAAGCGAGAAATCTCCGCCATGAGCATGGTCAAGCACCCCAAC ATTGTCCAGCTTCACGAGGTCATGGCCAGCAAAACCAAGATCTACATCGCCATGGAGCTCGTTCGCGGCGGCGAGCTTTT CAACAAGATCGCCAGAGGCCGCCTGAGAGAGGACGTCGCTAGGCTCTACTTCCAGCAGTTAATCTCCGCCGTTGATTTCT GCCACAGCCGCGGTGTCTACCACCGTGATCTCAAACCGGAGAATCTCCTGCTCGACGAGGACGGTAGCCTCAAGGTGACC GACTTCGGTCTCAGCACATTCGCCGAGCACATGCGCCAGGACGGGCTGCTCCACACCACATGCGGAACTCCGGCCTACGT TGCGCCGGAGGTCATCGGAAAAAAGGGCTATGACGGCGCCACGGCTGATATCTGGTCCTGTGGGGTTATCCTGTACGTGC TCTTAGCAGGGTTTCTACCCTTCCAGGACGAGAATCTGATGGCTATGTACAAGAAGATTTACAGGGGAGACTTCAAGTGC CCTCCATGGTTCTCCCCTGAAGCTCGAAGGCTCATCACCAAGCTTCTCGACCCGAATCCGAGTACCCGAATTACAATCTC CAAGATCATGGAGTCTTCCTGGTTCAGAAAATCGGCGAAGAGTGGTGCTGAGATGAAGAAGCATGAGCAGGAGCTGGAAT TTGATTTACAGGAGAAATTGAAGCTGCAGGAGCAGGAGCAAGTGCAGGAGCAACCCTCGACGATGAATGCCTTTCACATA ATTTCGCTTTCAGAGGGGTTTGATTTGTCGCCGCTGTTTGAGGAGAGGAAGAGGGAGGAGAAGGAAGAGATGAGATTCGC GACGACTAGGCCGGCAAGCAGTGTGATTTCGAGGCTGGAGGAAGTGGCGAAGGCGGGGAAGTTTGATGTGAAGAAGAGTG AAGGCAAGGTGAGGTTGCAGGGTCAGGAGAGGGGGAGGAAGGGGAAGCTGGCTATTGCGGCGGACATGTATGCGGTGACG CCGTCGTTTCTGGTGGTTGAGGTGAAGAAGGACAATGGTGACACCTTGGAGTACAACCAGTTCTGCAGCAAAGAGCTTCG CCCTGCACTCAAGGACATAGTGTGGAGGACTGAGACTCCAACACCAGCTTGA
CDS sequence (LotjaGi6g1v0204400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACAAATCCAGTAGCAGTAACGATGTGAGCTCCACATTGCTCCATGGCAAGTACGAGCTAGGCCGTCTTCTCGG CCATGGAACATTCGCGAAGGTGTACCACGCGCGGCACCTTGAGTCCGGCCGGAGCGTGGCGATCAAGGTGGTGGGGAAGG AGAAGGTGATCAGAGTCGGCATGATGGAGCAGATCAAGCGAGAAATCTCCGCCATGAGCATGGTCAAGCACCCCAACATT GTCCAGCTTCACGAGGTCATGGCCAGCAAAACCAAGATCTACATCGCCATGGAGCTCGTTCGCGGCGGCGAGCTTTTCAA CAAGATCGCCAGAGGCCGCCTGAGAGAGGACGTCGCTAGGCTCTACTTCCAGCAGTTAATCTCCGCCGTTGATTTCTGCC ACAGCCGCGGTGTCTACCACCGTGATCTCAAACCGGAGAATCTCCTGCTCGACGAGGACGGTAGCCTCAAGGTGACCGAC TTCGGTCTCAGCACATTCGCCGAGCACATGCGCCAGGACGGGCTGCTCCACACCACATGCGGAACTCCGGCCTACGTTGC GCCGGAGGTCATCGGAAAAAAGGGCTATGACGGCGCCACGGCTGATATCTGGTCCTGTGGGGTTATCCTGTACGTGCTCT TAGCAGGGTTTCTACCCTTCCAGGACGAGAATCTGATGGCTATGTACAAGAAGATTTACAGGGGAGACTTCAAGTGCCCT CCATGGTTCTCCCCTGAAGCTCGAAGGCTCATCACCAAGCTTCTCGACCCGAATCCGAGTACCCGAATTACAATCTCCAA GATCATGGAGTCTTCCTGGTTCAGAAAATCGGCGAAGAGTGGTGCTGAGATGAAGAAGCATGAGCAGGAGCTGGAATTTG ATTTACAGGAGAAATTGAAGCTGCAGGAGCAGGAGCAAGTGCAGGAGCAACCCTCGACGATGAATGCCTTTCACATAATT TCGCTTTCAGAGGGGTTTGATTTGTCGCCGCTGTTTGAGGAGAGGAAGAGGGAGGAGAAGGAAGAGATGAGATTCGCGAC GACTAGGCCGGCAAGCAGTGTGATTTCGAGGCTGGAGGAAGTGGCGAAGGCGGGGAAGTTTGATGTGAAGAAGAGTGAAG GCAAGGTGAGGTTGCAGGGTCAGGAGAGGGGGAGGAAGGGGAAGCTGGCTATTGCGGCGGACATGTATGCGGTGACGCCG TCGTTTCTGGTGGTTGAGGTGAAGAAGGACAATGGTGACACCTTGGAGTACAACCAGTTCTGCAGCAAAGAGCTTCGCCC TGCACTCAAGGACATAGTGTGGAGGACTGAGACTCCAACACCAGCTTGA
Protein sequence (LotjaGi6g1v0204400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKSSSSNDVSSTLLHGKYELGRLLGHGTFAKVYHARHLESGRSVAIKVVGKEKVIRVGMMEQIKREISAMSMVKHPNI VQLHEVMASKTKIYIAMELVRGGELFNKIARGRLREDVARLYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGSLKVTD FGLSTFAEHMRQDGLLHTTCGTPAYVAPEVIGKKGYDGATADIWSCGVILYVLLAGFLPFQDENLMAMYKKIYRGDFKCP PWFSPEARRLITKLLDPNPSTRITISKIMESSWFRKSAKSGAEMKKHEQELEFDLQEKLKLQEQEQVQEQPSTMNAFHII SLSEGFDLSPLFEERKREEKEEMRFATTRPASSVISRLEEVAKAGKFDVKKSEGKVRLQGQERGRKGKLAIAADMYAVTP SFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTETPTPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 438 | 426 | 1.4E-230 | – | |
| PANTHER | 13 | 438 | 426 | 1.4E-230 | – | |
| SUPERFAMILY | 17 | 298 | 282 | 7.82E-93 | ||
| Gene3D | 17 | 101 | 85 | 2.4E-27 | – | |
| CDD | 19 | 273 | 255 | 5.24947E-175 | – | |
| ProSiteProfiles | 20 | 274 | 255 | 52.145 | ||
| SMART | 20 | 274 | 255 | 5.2E-108 | ||
| Pfam | 20 | 274 | 255 | 1.6E-73 | ||
| ProSitePatterns | 26 | 53 | 28 | - | ||
| Gene3D | 102 | 281 | 180 | 7.9E-66 | – | |
| ProSitePatterns | 138 | 150 | 13 | - | ||
| Coils | 284 | 304 | 21 | - | – | |
| Gene3D | 308 | 435 | 128 | 4.3E-51 | – | |
| ProSiteProfiles | 309 | 333 | 25 | 13.694 | ||
| Pfam | 311 | 371 | 61 | 1.3E-23 | ||
| CDD | 315 | 430 | 116 | 4.4653E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi6g1v0204400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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