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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0208000 |
| Transcript ID | LotjaGi6g1v0208000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G15580.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q852U6|RHY1A_ARATH Probable E3 ubiquitin-protein ligase RHY1A; TrEMBL-Plants: tr|I3SCV3|I3SCV3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0208000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50578225..50579850) extracted from Lotus japonicus Gifu genome v1.2.
TGATGAGAGAGATAGAAAGAAAAGAAAAAGTAAGAAAGAGAAAACATGAGATGTGATAGATGATAAGATGAGAGAGATAG AAATAAAAAGAGGTGAAAATGAAGTGTTTAAAAAATGAGGTGTGTATATATCATTACTCGTCTAGAAACTTTAGCTACTA AACATTTTGTGAAAAGTTATAGTCCACCAACACCTCATAAGATATTTGGCTTACCATAAACAACACAATCTACTTATATT CATATTTTAATTGAGTGCCTGTTTGGCATAGACACATAACTTAATCATGAACCTACTCATATCATTCCAACCTTAGCTGC GGGATTCTTGGCTCTCTGAATCCGAGAATTTTCTGTCTTCTTTTCTTTTCCTCTGTCAGCAAAGCACTAGCAAAGAGCCT GCTCTAAACACCTCTTTCTATCCATTGATCTCTATCCATAACAGTAATAGAAAGAACAAGTCCAAAGCTGAAGAACAATT GTGCTCTGTTCAGCAAAAATGGCAGGAATGCTTCCGGGAGTTGAATCAGCTAGAAGGAGAAGGTTCCATAAAAGTGGAGG GTGCTTGGATGGACCACTGTTGGCTCCTCATAACTCCACTAGGCGCTCTTCGTTCTGTTTGTATGCAAGTAACCATGAAT CTCGCATTTCCTCATCTTCTTCCCTGGTCTGTGCTCTGTTTTCTCCCTGTCTTCAACTTTCACCATTGAATTTTCCTTTC TCTTTCTACAACTGTTCATGGGGTTGCATTAATTTACTTTCTTGATTTGAATTTAAACAGCAAAGAGGCTTGCTATACCA GGCACACCTTGATGAGAGTTTGGGGGGAGCAGCAAGAGAAGCTAAACATAGATTGGATGACAAGTTCAGAGCACAAAGGG TATCTGAAACCAATAGGTATATATGAGCAAAATTTTCCAATTTTTTTCATGGGTGACTTGATGTGATGATACCTGAAACT CAGATCTGATTAGAGAATTTTTTTTTTCTATATTGTTTTTGAAAACTTGTACTCAAATACAGTGTGGAGGAGAGAAGAAG AAGCTTAGGAGAGTTGGGGACAGAGACATATGGGTCAAGGAAAAGTGGTTCAAGGAGGTTCAGTTGGAGCAAATTGAGCT GGAAGGCCTCAGAGCAAGAGGATTGTGCAGTGTGTTTGGAAACATTCAGGAATGGGGAGACACTGATTCCTCTTCCTTGT GCCCACAGGTTCCATTCCAGATGCTTGAAGCCTTGGTTGGAAAATAATTCACACTGTCCATGCTGCAGAACCACCATTCT TTCCCTCTAGTTTTTATTTTTTTCATTGTGTGTAATTGTAGACTTGGTTGGATGATGAAGTCAAGAATTTTGACCATCTG ACTTACTTTTAATACGCGTGAGATTAAGTGCTGAGTTAATGTGAAAGAACTTTCATCTAAAATCGTAAGAAAAGTTCGTA CATTTTTTGTTTGAAATTTTTTTTAGTATTGGCGTAACCAGTATCCAAACATGACCTAAAACTATAAATAATGCCTTGCA TATTGAGTGGTCAATAGCTCTTAACCGTAGTCTATCTTGGATAATTAAAGTCAAGTCCATTCCATCAACTAAAAGCCATC TCAATCAAAACATGTTTGGGTGGTTG
CDS sequence (LotjaGi6g1v0208000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAATGCTTCCGGGAGTTGAATCAGCTAGAAGGAGAAGGTTCCATAAAAGTGGAGGGTGCTTGGATGGACCACT GTTGGCTCCTCATAACTCCACTAGGCGCTCTTCGTTCTGTTTGTATGCAAGTAACCATGAATCTCGCATTTCCTCATCTT CTTCCCTGCAAAGAGGCTTGCTATACCAGGCACACCTTGATGAGAGTTTGGGGGGAGCAGCAAGAGAAGCTAAACATAGA TTGGATGACAAGTTCAGAGCACAAAGGGTATCTGAAACCAATAGTGTGGAGGAGAGAAGAAGAAGCTTAGGAGAGTTGGG GACAGAGACATATGGGTCAAGGAAAAGTGGTTCAAGGAGGTTCAGTTGGAGCAAATTGAGCTGGAAGGCCTCAGAGCAAG AGGATTGTGCAGTGTGTTTGGAAACATTCAGGAATGGGGAGACACTGATTCCTCTTCCTTGTGCCCACAGGTTCCATTCC AGATGCTTGAAGCCTTGGTTGGAAAATAATTCACACTGTCCATGCTGCAGAACCACCATTCTTTCCCTCTAG
Protein sequence (LotjaGi6g1v0208000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGMLPGVESARRRRFHKSGGCLDGPLLAPHNSTRRSSFCLYASNHESRISSSSSLQRGLLYQAHLDESLGGAAREAKHR LDDKFRAQRVSETNSVEERRRSLGELGTETYGSRKSGSRRFSWSKLSWKASEQEDCAVCLETFRNGETLIPLPCAHRFHS RCLKPWLENNSHCPCCRTTILSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 39 | 181 | 143 | 1.3E-26 | – | |
| PANTHER | 39 | 181 | 143 | 1.3E-26 | – | |
| Gene3D | 117 | 181 | 65 | 1.0E-18 | ||
| SUPERFAMILY | 123 | 181 | 59 | 7.83E-20 | – | |
| CDD | 135 | 177 | 43 | 2.11456E-20 | – | |
| Pfam | 135 | 177 | 43 | 5.8E-12 | ||
| ProSiteProfiles | 136 | 177 | 42 | 12.829 | ||
| SMART | 136 | 176 | 41 | 2.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0208000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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