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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0211100 |
| Transcript ID | LotjaGi6g1v0211100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT2G43880.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P48979|PGLR_PRUPE Polygalacturonase; TrEMBL-Plants: tr|A0A1J7H996|A0A1J7H996_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0211100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50849963..50854341) extracted from Lotus japonicus Gifu genome v1.2.
TGACTTAGTTTGTACTTCAAACCACGTGACATTAAATATCTTCCTTAAGCTTTGTCCCCATGTCTCTATATAGCAAGTAT AAAATCTTCACGGATTCGTACAATTCTCATCAAAAAATCAATTTCATCATCATGGTTCATCATAATTTCTATCTCTTTAT TCTCCTAGCCACCACCTTCAGCTTCTTCTACGAAGCTTCAAGTGCTAAATTTATCAATGTGGTTAGCTTCGGAGCTAAAC CTGATGGAAATTCCGATTCAACCAAGTCCTTCCTTAGTGCATGGTCTTCAGCATGCACATCAAGGGAACAAGCTACAATT TATGTACCCCAAGGAAGTTTCTTGTTGAAACAAGTAACATTTTCGGGTCCTTGCAAGAACAAGGTCGAAATTAAAATAGA TGGCACTTTAGTGGCACCTAAAGATTACTGGTCACTTGGTGGTTCCGGTGAATACTGGATCTTGTTCATGAAGGTTGATA AGTTGAAAATCCAGGGAGGGACTATTGATGGAAAGGGTTCTGGCTATTGGCGTTGCAGAAGATCTGGAAAAAATTGTCCT GCTGGAGCAAGGGTATGTGTAAACAACTAAACATCATTCTTGCGTATTAGTGTGTACTATGCCTATCAAAAGTACAAAAG TAGTTAATATATCCGAGTACATAGTTTAATTCAATTTTTTTTCCTAATATATAATTTTAGTTGTGTGTTTGGTTCCTCCT TGAATAACCTTAGAATTAATTAATTCTAAAACGGTAAATCAATTATCTATGATACTGTAATTAATGTACGTTTGGACATA CATGATACATGACGAATCAAAATTATAGTATATAAAAACAATTTCTCTAATTAACCTTTAAAAGTTATTTTAGAGAATTG ATTTAAACCCCAAAACCAATTCTATTCAGAGCTAAGCAAAGTAGCTTGTATTATGCATAATCAATTCTAAAATTTATCCG ACAAAATTCATTTTTCCTGTGAAAGTATCCAAAATAATATTATTTTCAACTCACATTTACTATAATCAACTTTATTAAAA TCAATTCTTACAATGTTGTTCATCTAAACATACTAATGGTGAATTCTATTTTTAAAAATTCAACATAAGTACCTTGTAAA TCATTACAGTTTTTTTTATTACAAGAGAAAAATAAATCATCACAGTTTAAAATATGGGTTCACTTTTTTTTTAAATAACT AATTCTAAAGAGTGTATTGAAATTTGTGTTAAACATGTGCTACCAACCTTCTTCATTTTAAAAATTATACTTTATTTTAC CTTCTTCATTATAAATTAAACTATTACTAATATTTTTTAATTTTTTATAGGATACTTTTAAAATGCTTTTTGTAAAATTA TTGGAAAAAAATTCGTAACATTTTTATATGATATTTTTTTTTACTTTTTTAAAATTGAAGTCAATAGAATATTATATTTA TACACATATCACATAATCATTTATCGAACACGCTAGAAAGTCAGGTTCCGTTGATTACTCAAATTAGGAAATTTAAAAGT TTTAGGAAAAAAATACAATTTCACTCCGGTGAGAGATTGACTTTAGCCAATGATAAAGTTTGAGGGACTAAACACATATT CAACCCCTTAGTAAAATTCTTCCCTAATCCCAAAATTCTTTTTAAGATTTGCATGTATTGGCAATATTTATGATGAAAAA ACCCCTCCATAAAATCCCTCACTTTTTTTTTATCTCTATTATACATCAGCCTGAAATTTTGCGAGAAAGGGTGAAATAAA ATTTTTAGAGAAAAATAAAGTTTAAGTGTCATGTGAGCAAAACAGAAGCCAAAGCCAATAGAAAATAAATTACTCGTAAG ATTTTATTTATATGGTGGGTCAACCCGTCAACCCACCTAATTCGCCCTTAAACAATGACCTAAGCTTTTTAAGCCGCCCT CAAAGGCAGGCCAACCCATCCACCCCTTTTTTTTGATGGGTTGAGAGAATGGCGGCGCTTGACCTACCAACCCATTTTAC TATATATCGCAAGATATAATTATTACTCAATCATTTAAAATATTCAAAGTATGAAAAATTATTAATGAGTTACGATAGGT AAAGAGTAGTTTATGTAAGTCTCTCTATAATTAACTTCAAACTTTTCAATCCTTTGTGTAATGACTATATATATGAAAGG GATGTAAAATAACTAAATTGTTTTAAGATAAACATATCATATCTTACAATCATCACAATTTAATTTTTTAAATGACATAA ATTAAAGATATTTTTTTTTTTGGTGTTAAACGTTAATTTGAAAGAATCAAAGGCTAGTAAATACATTGTTTGGATAAACT TGACCGACCTCATAATCAATTATGACATTCAAAAACTATTTATAGTAGTTTGTCAGCAAAATTGATTTTTTCTTTTAATC AATTTGCCCGAGCTGGCCGTTCATTTTGGATACATTCATTAATTTGCATTACCTTTGGATACTAAGAGTGAATTTTTGAT TATTTCGCTTAGAAATTTCGATTCAAAAATTCAAAAAGGATAAGAGATTTGAAATACAATAATTATGTATTTGGCAAATC AAATACCATGGTTTAATAACAAATCATTCGGATTAATTGATAATATTAATGGATTGATCAAAATGCAGTCTTTATCATTC AGTTGGTCCAGCAATGTGGTGGTTAGTGGACTAAAATCACTTAATAGCCAGACAATGCACATTGCTGTCGACCATTGCAC AAACGTTCTGATCCAAGGTGTTAGAATCAGAGCTCCAAGTGGAAGCCCCAACACAGATGGAATCAATGTGCAGTTTTCAA CTGGAGTTACCATCATGCATTCTGCCATCATGACTGGTGATGATTGTATTTCCATAAACCAAGGTACCACCCATATGTGG ATCGAACGCATCGCTTGCGGCCCCGGACATGGCATTAGGTATGTAATTCGCGTCTCAATTCCGATTAAATTTTGTCGTGT CAAATAAAAAAGACATGCGTGAGTTAGTTACAAACTTACGTCGTAGTTTTTAATTTGATTACAGCATTGGGAGCTTGGGA ACTTCTTCGAATGAGGCAGGAGTGAGGAACGTGACAGTGACCAATTCAGTGTTCACCAAAACCGATAATGGAGTTAGGAT CAAATCATGGGCGAGACCAAGCAATGGATTTGTAAGAGACATTGTGTTCAGGAAACTTATCATGCAAAATGTCTACAATC CCATCATTATTGATCAAAGATATTGCCCTGGCAGGCAATGTCCTCACCAGGTCAGTAAGATTGATCTCTACAAACCAGGA TTATTATTACATGCTTAATTTCAAATTGAGGGAATGGTGAAATGGTCCTGTTGGACGCCGACAAGTTCGTCTCTAGATTT AAAAAATACCGGTGCGTTCCTTAATTGTATTAAATTTGGGTGAATTTAGTCTTTGTGGTTAGATAAAACGTTAGTCAAGT TAGTCTCTAACTAGCATTTTACACAATTAGGGACCGCAGAAATATTTCTTTTATCTACAGACGAACTTGTCAACGCTCAA CACTTTTAGGGACCAAATTGACCATTCACCTTTTCCAATTCAATAATAACCTAATCATGAATAATTTGAAAACACTTTTA TGGACCAATTTGACGAACTTGCTAGCGTTTAACACTTTTAGGGACTAATTTGACCATTCATTCTTTCCGATTCAATAATA ACCTAATCATGAATAATTTGAAAACAGAGTTCTGGGGTGAAGATAAGCAAAGTGTCATATGAAGACATACATGGAACTTC AGCAAGTCCAGTAGCTATTAATTTTGACTGCAGTCAAAGCAATCCATGCTGGGGAATCAAGCTGCAAGACATAAATCTCG TTTATCGGAAAGGTTCTGCAAAATCAGCTTGTAGAAATGCTGGTGGCAGTACCATTGGAGTGGTCATCCCAAGGAGCTGT ATTTAAATTTATACACTTTAATTGAAAATAAAAAAGTTGATCATAATTGAAAAACACTGTAATTTCTGCACATATCATTT CATTATTGCCTGCAATGTGAGTGAAACTTGATATCATATATAGTCTTCATCAATATTGAATGTATTTCATATGTTGAATT TCTTTTTACTGAAATGTATATAGATTGCATAATGTAAAAGCAGTTTGCCTCTCTCTATCTATAGTCTATACGTATTTTCA GTGGAAATAATATAAATAGACTCGCTGCTTAGAAATATCAATTGTTGGTTTGTGTGATTGCATTGTGAGAGAAATGCGAC TGCAGATTTTTGGCAATGATAAAGCTAAATTAAGTTTCTGATGGGTTGGTGATTCACCATCAACCTCCTCCGGGTGGTTC ACTTTTGGCTGAAAATGACAGACACCTTGTTTTTGAGGCGTTAGCTTATTTTTCTTTAA
CDS sequence (LotjaGi6g1v0211100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTATATAGCAAGTATAAAATCTTCACGGATTCGTACAATTCTCATCAAAAAATCAATTTCATCATCATGGTTCA TCATAATTTCTATCTCTTTATTCTCCTAGCCACCACCTTCAGCTTCTTCTACGAAGCTTCAAGTGCTAAATTTATCAATG TGGTTAGCTTCGGAGCTAAACCTGATGGAAATTCCGATTCAACCAAGTCCTTCCTTAGTGCATGGTCTTCAGCATGCACA TCAAGGGAACAAGCTACAATTTATGTACCCCAAGGAAGTTTCTTGTTGAAACAAGTAACATTTTCGGGTCCTTGCAAGAA CAAGGTCGAAATTAAAATAGATGGCACTTTAGTGGCACCTAAAGATTACTGGTCACTTGGTGGTTCCGGTGAATACTGGA TCTTGTTCATGAAGGTTGATAAGTTGAAAATCCAGGGAGGGACTATTGATGGAAAGGGTTCTGGCTATTGGCGTTGCAGA AGATCTGGAAAAAATTGTCCTGCTGGAGCAAGGTCTTTATCATTCAGTTGGTCCAGCAATGTGGTGGTTAGTGGACTAAA ATCACTTAATAGCCAGACAATGCACATTGCTGTCGACCATTGCACAAACGTTCTGATCCAAGGTGTTAGAATCAGAGCTC CAAGTGGAAGCCCCAACACAGATGGAATCAATGTGCAGTTTTCAACTGGAGTTACCATCATGCATTCTGCCATCATGACT GGTGATGATTGTATTTCCATAAACCAAGGTACCACCCATATGTGGATCGAACGCATCGCTTGCGGCCCCGGACATGGCAT TAGCATTGGGAGCTTGGGAACTTCTTCGAATGAGGCAGGAGTGAGGAACGTGACAGTGACCAATTCAGTGTTCACCAAAA CCGATAATGGAGTTAGGATCAAATCATGGGCGAGACCAAGCAATGGATTTGTAAGAGACATTGTGTTCAGGAAACTTATC ATGCAAAATGTCTACAATCCCATCATTATTGATCAAAGATATTGCCCTGGCAGGCAATGTCCTCACCAGAGTTCTGGGGT GAAGATAAGCAAAGTGTCATATGAAGACATACATGGAACTTCAGCAAGTCCAGTAGCTATTAATTTTGACTGCAGTCAAA GCAATCCATGCTGGGGAATCAAGCTGCAAGACATAAATCTCGTTTATCGGAAAGGTTCTGCAAAATCAGCTTGTAGAAAT GCTGGTGGCAGTACCATTGGAGTGGTCATCCCAAGGAGCTGTATTTAA
Protein sequence (LotjaGi6g1v0211100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLYSKYKIFTDSYNSHQKINFIIMVHHNFYLFILLATTFSFFYEASSAKFINVVSFGAKPDGNSDSTKSFLSAWSSACT SREQATIYVPQGSFLLKQVTFSGPCKNKVEIKIDGTLVAPKDYWSLGGSGEYWILFMKVDKLKIQGGTIDGKGSGYWRCR RSGKNCPAGARSLSFSWSSNVVVSGLKSLNSQTMHIAVDHCTNVLIQGVRIRAPSGSPNTDGINVQFSTGVTIMHSAIMT GDDCISINQGTTHMWIERIACGPGHGISIGSLGTSSNEAGVRNVTVTNSVFTKTDNGVRIKSWARPSNGFVRDIVFRKLI MQNVYNPIIIDQRYCPGRQCPHQSSGVKISKVSYEDIHGTSASPVAINFDCSQSNPCWGIKLQDINLVYRKGSAKSACRN AGGSTIGVVIPRSCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 44 | 25 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| PANTHER | 35 | 415 | 381 | 2.1E-191 | – | |
| PANTHER | 35 | 415 | 381 | 2.1E-191 | – | |
| Gene3D | 38 | 412 | 375 | 2.9E-114 | ||
| SUPERFAMILY | 43 | 415 | 373 | 8.64E-119 | ||
| Phobius | 45 | 415 | 371 | - | – | |
| Pfam | 79 | 401 | 323 | 2.3E-91 | ||
| SMART | 201 | 227 | 27 | 43.0 | ||
| SMART | 228 | 249 | 22 | 1200.0 | ||
| ProSitePatterns | 258 | 271 | 14 | - | ||
| SMART | 281 | 302 | 22 | 2.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0211100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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