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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0217200 |
| Transcript ID | LotjaGi6g1v0217200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|A8F530|SECA_PSELT Protein translocase subunit SecA; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51907718..51910908) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTCCAGGACGCTCCACTGGGTTTATTGATCCTGGTTGGGATCATGGTATTGCTCAAGATGAGCGGAAAAAGAAGGT TAGGTGCAATTATTGTGGGAAAATAGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAG TAACATACTGTGAAAAAGCTCCTGAGGAAGTCTACCTAAGAATGAAGGAGAACCTGGAAGGATGTCGTCCCAACAAGAAA CAAAAGCAAGTTGATGTGCAATCATATATGAATTTTGGCTCTAATGATGATGAAGACGACGATGAGCAAGTTGGGTGTCG AAGCAAAGGGAAGCAATTGATGGATGATAGAAATGTAGCTGTAAATTTAACTCCTCTTAGGTCCCTAGGATATATTGACC CAGGGTGGGAACATGGTGTTGCTCAGGATGAGAGAAAGAAGAAAGTAAAATGCAATTACTGTGAGAAAGTTGTTAGTGGA GGTATTAATCGATTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAAGGCTCCAGAAGAAGTTTA TCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAGGAGACACAGGAGACCTGAGGCTAAGGAGTTGATGCCTT CCTATGCAAAGTCTGATGATGAAGATGATGAGTATGAGCAAGAGGAAGATGCTTTGCATCATATGAACAAGGAAACTTTC ATTGATGTTGACAAGAGATTCTCTAAAGATTTAATGAAGACCTTCAAAGGTATTTCACCTAGTACTTGTCCTGAACCAGT ATTGAGAAGATCAAGATTAGATAATGTTTACCTGAAACTGCCCAAGAATCAGACTCCTCAAACATACAAACCTGGAAAAG TTAAGACGGGCCCCACCAAGAAATCACGCAGGGAAGTTTTTTCTACAATATGCAAGTTCTTTTACCATGCGGGAATTCCC GTACAGGCTGCTGACTCCCTATATTTTCATAAAATGCTGGAAGCAGTTGGTCAATATGGACAAGGACTGGTATGCCCTCC AAGCCAACTTATTTCTGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTACCTTGTTGAATATAAGGCTTCCT GGGCAATCACTGGTTGTTCTATACTAGCAGATAGTTGGAGAGATAAACAGGGTAGGACAGTTATTAATTTTCTTGTTTCT TGTCCTCATGGTGTATACTTTGTTTCCTCAGTTGATGCCACTAATGTAGTAGAAGATGCACCAAGTTTATTTAAGCTTCT AGACAAAGTAGTGGAAGAAGTAGGTGAAGAAAATGTAGTGCAGGTAAAATGTTTTTCTATTCTTGTGCCATCCTCCTTAA TCCTAAAATATAACTTTTTAGCTGTTGTTAATTATTGCTTCTTCTTTTTTACCCTCTTGATTTAGGTAATCACTGAATAT ACTCCCAACTATAGAGCTGCTGGGAAAATGCTTGAAGAGAAGAGAAGGAATATATTCTGGACCCCCTGTGCCACTTATTG TATTAATAGAATGCTTGGAGATTTTCTGAAGATAAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAAC TAATATACAATCAAACATGGTTGTTAAATCTTATGAAAAGTGAATTTACTGAGGGGCGGGAGCTTTTAAAGCCGGCTGGC ACCCGGTATGCCTCTAGCTTTGCTACATTGCAAAGCTTGTTGGATCATCGAGTTGGTCTCAGACGAATGTTTCTTTCAAA CAAATGGAATACATCCAGGTACTCCAGCTCAAGCGAGGGGAAAGAGGTGGAAAAATTTGTTTTGAGTGCCACATTTTGGA AGAAACTGCAGCATGTTTGTAAGTCAATAGATCCGATAATGCAAGTACTTCAAAAGGTTTGTAGTGGTGAGAACTTGTCA ATGCCATACATATATAATGATATGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGTGACGATGCACGTAAATTTGA ACCATTCTGGAAGGTAATAGACAGCCATTGGAACTCTCTGTTCTATCACCCTCTTTACTTGGCTGCTTACTTCCTTAATC CATCATACCGATATCGTCAGGATTTTGTGGCGGTAAGTGAGTATTGAATATATTCCCTAATGGTTGCAAATTTTCAAATT TTCTCTCCTGAAATGAATGTTTGATATGATTATAGCACTCTGAGGTAGTACGGGGGCTCAATGAATGCATTGTTCGGCTG GAGCCAGATAATATGAGACGGATCTCTGCATCAATGCAGGTAAGATATTCTCAATTACTGTTATATAGTGCAGACAATCA TTCGATATTTATGTTTTCTAATACAAAATGGTGTCATTTCCAGATTTCTCATTATAACTCTGCACAAGATGATTTTGGAA CTGATTTGGCGATTGGCACAAGATCAGGTCTTGAACCAGGTAAACTTGTATATTATTTGCTTGACACTTTATTTAGTGAT TCTCACGTTTTGAGGTGCTTTGCTACTTTTGTATGATTTGATCAGTTTCCTCTCCTTGTTTCATTTCACTAGCTGCTTGG TGGCAACAACATGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCGGTACGCATATTAAGTCAGACATGCTCATCATTTGC GTGTGAGCATGATTGGAGTATATACGATCAGATATATAGCAAAAGACAAAATCGACTATCTCAGAAGAAACTGAATGACA TTGTCTTCGTTCACTACAATTTGAGACTTAGAGAATGCCAAGTAAGAAAAAGGTCCAGGGACTCAAAGTCAACCTCTGTT GACAGTGTTCTACTAGAGCATTTACTCAGTGATTGGATAGTCGATGCCAATGTTCAAAGCTTTGATGGTGATAAGGTAAT CAGTGCTTAGTATTAATGGCTGTGAACTATCAATACAGCACCAATCATGTGGCCTATACTGATGGAAAATTTGTTTCGCT TTTTGTTTTCTGTAGAATTACCCTTTTGGAGTTGAACTAGATGATGAATATGAAACCGATTCAATTGATTATGATGATGG AGCTGCAAGGCCTCTAAAGGGATCATCCCTTGAACTGGAGACTATGGATGGTGTAGCAGTAGGATCACCAGATGTAGAAC ATGCTAACATTGATGATGCCAGTGACGATGAGTCTGATCTGAATTATTTTCATGATGATTTGAGCGAGTAA
CDS sequence (LotjaGi6g1v0217200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAGGACGCTCCACTGGGTTTATTGATCCTGGTTGGGATCATGGTATTGCTCAAGATGAGCGGAAAAAGAAGGT TAGGTGCAATTATTGTGGGAAAATAGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAG TAACATACTGTGAAAAAGCTCCTGAGGAAGTCTACCTAAGAATGAAGGAGAACCTGGAAGGATGTCGTCCCAACAAGAAA CAAAAGCAAGTTGATGTGCAATCATATATGAATTTTGGCTCTAATGATGATGAAGACGACGATGAGCAAGTTGGGTGTCG AAGCAAAGGGAAGCAATTGATGGATGATAGAAATGTAGCTGTAAATTTAACTCCTCTTAGGTCCCTAGGATATATTGACC CAGGGTGGGAACATGGTGTTGCTCAGGATGAGAGAAAGAAGAAAGTAAAATGCAATTACTGTGAGAAAGTTGTTAGTGGA GGTATTAATCGATTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAAGGCTCCAGAAGAAGTTTA TCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAGGAGACACAGGAGACCTGAGGCTAAGGAGTTGATGCCTT CCTATGCAAAGTCTGATGATGAAGATGATGAGTATGAGCAAGAGGAAGATGCTTTGCATCATATGAACAAGGAAACTTTC ATTGATGTTGACAAGAGATTCTCTAAAGATTTAATGAAGACCTTCAAAGGTATTTCACCTAGTACTTGTCCTGAACCAGT ATTGAGAAGATCAAGATTAGATAATGTTTACCTGAAACTGCCCAAGAATCAGACTCCTCAAACATACAAACCTGGAAAAG TTAAGACGGGCCCCACCAAGAAATCACGCAGGGAAGTTTTTTCTACAATATGCAAGTTCTTTTACCATGCGGGAATTCCC GTACAGGCTGCTGACTCCCTATATTTTCATAAAATGCTGGAAGCAGTTGGTCAATATGGACAAGGACTGGTATGCCCTCC AAGCCAACTTATTTCTGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTACCTTGTTGAATATAAGGCTTCCT GGGCAATCACTGGTTGTTCTATACTAGCAGATAGTTGGAGAGATAAACAGGGTAGGACAGTTATTAATTTTCTTGTTTCT TGTCCTCATGGTGTATACTTTGTTTCCTCAGTTGATGCCACTAATGTAGTAGAAGATGCACCAAGTTTATTTAAGCTTCT AGACAAAGTAGTGGAAGAAGTAGGTGAAGAAAATGTAGTGCAGGTAATCACTGAATATACTCCCAACTATAGAGCTGCTG GGAAAATGCTTGAAGAGAAGAGAAGGAATATATTCTGGACCCCCTGTGCCACTTATTGTATTAATAGAATGCTTGGAGAT TTTCTGAAGATAAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAACTAATATACAATCAAACATGGTT GTTAAATCTTATGAAAAGTGAATTTACTGAGGGGCGGGAGCTTTTAAAGCCGGCTGGCACCCGGTATGCCTCTAGCTTTG CTACATTGCAAAGCTTGTTGGATCATCGAGTTGGTCTCAGACGAATGTTTCTTTCAAACAAATGGAATACATCCAGGTAC TCCAGCTCAAGCGAGGGGAAAGAGGTGGAAAAATTTGTTTTGAGTGCCACATTTTGGAAGAAACTGCAGCATGTTTGTAA GTCAATAGATCCGATAATGCAAGTACTTCAAAAGGTTTGTAGTGGTGAGAACTTGTCAATGCCATACATATATAATGATA TGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGTGACGATGCACGTAAATTTGAACCATTCTGGAAGGTAATAGAC AGCCATTGGAACTCTCTGTTCTATCACCCTCTTTACTTGGCTGCTTACTTCCTTAATCCATCATACCGATATCGTCAGGA TTTTGTGGCGCACTCTGAGGTAGTACGGGGGCTCAATGAATGCATTGTTCGGCTGGAGCCAGATAATATGAGACGGATCT CTGCATCAATGCAGATTTCTCATTATAACTCTGCACAAGATGATTTTGGAACTGATTTGGCGATTGGCACAAGATCAGGT CTTGAACCAGCTGCTTGGTGGCAACAACATGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCGGTACGCATATTAAGTCA GACATGCTCATCATTTGCGTGTGAGCATGATTGGAGTATATACGATCAGATATATAGCAAAAGACAAAATCGACTATCTC AGAAGAAACTGAATGACATTGTCTTCGTTCACTACAATTTGAGACTTAGAGAATGCCAAGTAAGAAAAAGGTCCAGGGAC TCAAAGTCAACCTCTGTTGACAGTGTTCTACTAGAGCATTTACTCAGTGATTGGATAGTCGATGCCAATGTTCAAAGCTT TGATGGTGATAAGAATTACCCTTTTGGAGTTGAACTAGATGATGAATATGAAACCGATTCAATTGATTATGATGATGGAG CTGCAAGGCCTCTAAAGGGATCATCCCTTGAACTGGAGACTATGGATGGTGTAGCAGTAGGATCACCAGATGTAGAACAT GCTAACATTGATGATGCCAGTGACGATGAGTCTGATCTGAATTATTTTCATGATGATTTGAGCGAGTAA
Protein sequence (LotjaGi6g1v0217200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPGRSTGFIDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLRMKENLEGCRPNKK QKQVDVQSYMNFGSNDDEDDDEQVGCRSKGKQLMDDRNVAVNLTPLRSLGYIDPGWEHGVAQDERKKKVKCNYCEKVVSG GINRFKQHLARIPGEVAPCKKAPEEVYLKIKENMKWHRTGRRHRRPEAKELMPSYAKSDDEDDEYEQEEDALHHMNKETF IDVDKRFSKDLMKTFKGISPSTCPEPVLRRSRLDNVYLKLPKNQTPQTYKPGKVKTGPTKKSRREVFSTICKFFYHAGIP VQAADSLYFHKMLEAVGQYGQGLVCPPSQLISGRFLQEEINSIKNYLVEYKASWAITGCSILADSWRDKQGRTVINFLVS CPHGVYFVSSVDATNVVEDAPSLFKLLDKVVEEVGEENVVQVITEYTPNYRAAGKMLEEKRRNIFWTPCATYCINRMLGD FLKIRCVEECMEKGQKITKLIYNQTWLLNLMKSEFTEGRELLKPAGTRYASSFATLQSLLDHRVGLRRMFLSNKWNTSRY SSSSEGKEVEKFVLSATFWKKLQHVCKSIDPIMQVLQKVCSGENLSMPYIYNDMYRAKLAIKSIHGDDARKFEPFWKVID SHWNSLFYHPLYLAAYFLNPSYRYRQDFVAHSEVVRGLNECIVRLEPDNMRRISASMQISHYNSAQDDFGTDLAIGTRSG LEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDWSIYDQIYSKRQNRLSQKKLNDIVFVHYNLRLRECQVRKRSRD SKSTSVDSVLLEHLLSDWIVDANVQSFDGDKNYPFGVELDDEYETDSIDYDDGAARPLKGSSLELETMDGVAVGSPDVEH ANIDDASDDESDLNYFHDDLSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 8 | 64 | 57 | 10.208 | ||
| Pfam | 13 | 49 | 37 | 8.6E-8 | ||
| PANTHER | 40 | 118 | 79 | 0.0 | – | |
| PANTHER | 40 | 118 | 79 | 0.0 | – | |
| ProSiteProfiles | 130 | 186 | 57 | 10.968 | ||
| Pfam | 136 | 171 | 36 | 4.8E-7 | ||
| PANTHER | 159 | 826 | 668 | 0.0 | – | |
| PANTHER | 159 | 826 | 668 | 0.0 | – | |
| MobiDBLite | 198 | 224 | 27 | - | – | |
| Coils | 218 | 238 | 21 | - | – | |
| Pfam | 346 | 497 | 152 | 5.8E-58 | ||
| SUPERFAMILY | 371 | 789 | 419 | 2.12E-52 | ||
| Pfam | 714 | 787 | 74 | 7.5E-12 | ||
| MobiDBLite | 875 | 902 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0217200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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