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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0217200 |
Transcript ID | LotjaGi6g1v0217200.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|B8E2F5|TRMFO_DICTD Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51907782..51910908) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTCCAGGACGCTCCACTGGGTTTATTGATCCTGGTTGGGATCATGGTATTGCTCAAGATGAGCGGAAAAAGAAGGT TAGGTGCAATTATTGTGGGAAAATAGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAG TAACATACTGTGAAAAAGCTCCTGAGGAAGTCTACCTAAGAATGAAGGAGAACCTGGAAGGATGTCGTCCCAACAAGAAA CAAAAGCAAGTTGATGTGCAATCATATATGAATTTTGGCTCTAATGATGATGAAGACGACGATGAGCAAGTTGGGTGTCG AAGCAAAGGGAAGCAATTGATGGATGATAGAAATGTAGCTGTAAATTTAACTCCTCTTAGGTCCCTAGGATATATTGACC CAGGGTGGGAACATGGTGTTGCTCAGGATGAGAGAAAGAAGAAAGTAAAATGCAATTACTGTGAGAAAGTTGTTAGTGGA GGTATTAATCGATTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAAGGCTCCAGAAGAAGTTTA TCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAGGAGACACAGGAGACCTGAGGCTAAGGAGTTGATGCCTT CCTATGCAAAGTCTGATGATGAAGATGATGAGTATGAGCAAGAGGAAGATGCTTTGCATCATATGAACAAGGAAACTTTC ATTGATGTTGACAAGAGATTCTCTAAAGATTTAATGAAGACCTTCAAAGGTATTTCACCTAGTACTTGTCCTGAACCAGT ATTGAGAAGATCAAGATTAGATAATGTTTACCTGAAACTGCCCAAGAATCAGACTCCTCAAACATACAAACCTGGAAAAG TTAAGACGGGCCCCACCAAGAAATCACGCAGGGAAGTTTTTTCTACAATATGCAAGTTCTTTTACCATGCGGGAATTCCC GTACAGGCTGCTGACTCCCTATATTTTCATAAAATGCTGGAAGCAGTTGGTCAATATGGACAAGGACTGGTATGCCCTCC AAGCCAACTTATTTCTGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTACCTTGTTGAATATAAGGCTTCCT GGGCAATCACTGGTTGTTCTATACTAGCAGATAGTTGGAGAGATAAACAGGGTAGGACAGTTATTAATTTTCTTGTTTCT TGTCCTCATGGTGTATACTTTGTTTCCTCAGTTGATGCCACTAATGTAGTAGAAGATGCACCAAGTTTATTTAAGCTTCT AGACAAAGTAGTGGAAGAAGTAGGTGAAGAAAATGTAGTGCAGGTAAAATGTTTTTCTATTCTTGTGCCATCCTCCTTAA TCCTAAAATATAACTTTTTAGCTGTTGTTAATTATTGCTTCTTCTTTTTTACCCTCTTGATTTAGGTAATCACTGAATAT ACTCCCAACTATAGAGCTGCTGGGAAAATGCTTGAAGAGAAGAGAAGGAATATATTCTGGACCCCCTGTGCCACTTATTG TATTAATAGAATGCTTGGAGATTTTCTGAAGATAAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAAC TAATATACAATCAAACATGGTTGTTAAATCTTATGAAAAGTGAATTTACTGAGGGGCGGGAGCTTTTAAAGCCGGCTGGC ACCCGGTATGCCTCTAGCTTTGCTACATTGCAAAGCTTGTTGGATCATCGAGTTGGTCTCAGACGAATGTTTCTTTCAAA CAAATGGAATACATCCAGGTACTCCAGCTCAAGCGAGGGGAAAGAGGTGGAAAAATTTGTTTTGAGTGCCACATTTTGGA AGAAACTGCAGCATGTTTGTAAGTCAATAGATCCGATAATGCAAGTACTTCAAAAGGTTTGTAGTGGTGAGAACTTGTCA ATGCCATACATATATAATGATATGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGTGACGATGCACGTAAATTTGA ACCATTCTGGAAGGTAATAGACAGCCATTGGAACTCTCTGTTCTATCACCCTCTTTACTTGGCTGCTTACTTCCTTAATC CATCATACCGATATCGTCAGGATTTTGTGGCGGTAAGTGAGTATTGAATATATTCCCTAATGGTTGCAAATTTTCAAATT TTCTCTCCTGAAATGAATGTTTGATATGATTATAGCACTCTGAGGTAGTACGGGGGCTCAATGAATGCATTGTTCGGCTG GAGCCAGATAATATGAGACGGATCTCTGCATCAATGCAGGTAAGATATTCTCAATTACTGTTATATAGTGCAGACAATCA TTCGATATTTATGTTTTCTAATACAAAATGGTGTCATTTCCAGATTTCTCATTATAACTCTGCACAAGATGATTTTGGAA CTGATTTGGCGATTGGCACAAGATCAGGTCTTGAACCAGGTAAACTTGTATATTATTTGCTTGACACTTTATTTAGTGAT TCTCACGTTTTGAGGTGCTTTGCTACTTTTGTATGATTTGATCAGTTTCCTCTCCTTGTTTCATTTCACTAGCTGCTTGG TGGCAACAACATGGAATAAGTTGCTTAGAGTTGCAAAGAATAGCGGTACGCATATTAAGTCAGACATGCTCATCATTTGC GTGTGAGCATGATTGGAGTATATACGATCAGATATATAGCAAAAGACAAAATCGACTATCTCAGAAGAAACTGAATGACA TTGTCTTCGTTCACTACAATTTGAGACTTAGAGAATGCCAAGTAAGAAAAAGGTCCAGGGACTCAAAGTCAACCTCTGTT GACAGTGTTCTACTAGAGCATTTACTCAGTGATTGGATAGTCGATGCCAATGTTCAAAGCTTTGATGGTGATAAGGTAAT CAGTGCTTAGTATTAATGGCTGTGAACTATCAATACAGCACCAATCATGTGGCCTATACTGATGGAAAATTTGTTTCGCT TTTTGTTTTCTGTAGAATTACCCTTTTGGAGTTGAACTAGATGATGAATATGAAACCGATTCAATTGATTATGATGATGG AGCTGCAAGGCCTCTAAAGGGATCATCCCTTGAACTGGAGACTATGGATGGTGTAGCAGTAGGATCACCAGATGTAGAAC ATGCTAA
CDS sequence (LotjaGi6g1v0217200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAGGACGCTCCACTGGGTTTATTGATCCTGGTTGGGATCATGGTATTGCTCAAGATGAGCGGAAAAAGAAGGT TAGGTGCAATTATTGTGGGAAAATAGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAG TAACATACTGTGAAAAAGCTCCTGAGGAAGTCTACCTAAGAATGAAGGAGAACCTGGAAGGATGTCGTCCCAACAAGAAA CAAAAGCAAGTTGATGTGCAATCATATATGAATTTTGGCTCTAATGATGATGAAGACGACGATGAGCAAGTTGGGTGTCG AAGCAAAGGGAAGCAATTGATGGATGATAGAAATGTAGCTGTAAATTTAACTCCTCTTAGGTCCCTAGGATATATTGACC CAGGGTGGGAACATGGTGTTGCTCAGGATGAGAGAAAGAAGAAAGTAAAATGCAATTACTGTGAGAAAGTTGTTAGTGGA GGTATTAATCGATTTAAACAACATTTGGCTAGAATTCCTGGAGAGGTAGCACCTTGTAAAAAGGCTCCAGAAGAAGTTTA TCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAGGAGACACAGGAGACCTGAGGCTAAGGAGTTGATGCCTT CCTATGCAAAGTCTGATGATGAAGATGATGAGTATGAGCAAGAGGAAGATGCTTTGCATCATATGAACAAGGAAACTTTC ATTGATGTTGACAAGAGATTCTCTAAAGATTTAATGAAGACCTTCAAAGGTATTTCACCTAGTACTTGTCCTGAACCAGT ATTGAGAAGATCAAGATTAGATAATGTTTACCTGAAACTGCCCAAGAATCAGACTCCTCAAACATACAAACCTGGAAAAG TTAAGACGGGCCCCACCAAGAAATCACGCAGGGAAGTTTTTTCTACAATATGCAAGTTCTTTTACCATGCGGGAATTCCC GTACAGGCTGCTGACTCCCTATATTTTCATAAAATGCTGGAAGCAGTTGGTCAATATGGACAAGGACTGGTATGCCCTCC AAGCCAACTTATTTCTGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTACCTTGTTGAATATAAGGCTTCCT GGGCAATCACTGGTTGTTCTATACTAGCAGATAGTTGGAGAGATAAACAGGGTAGGACAGTTATTAATTTTCTTGTTTCT TGTCCTCATGGTGTATACTTTGTTTCCTCAGTTGATGCCACTAATGTAGTAGAAGATGCACCAAGTTTATTTAAGCTTCT AGACAAAGTAGTGGAAGAAGTAGGTGAAGAAAATGTAGTGCAGGTAATCACTGAATATACTCCCAACTATAGAGCTGCTG GGAAAATGCTTGAAGAGAAGAGAAGGAATATATTCTGGACCCCCTGTGCCACTTATTGTATTAATAGAATGCTTGGAGAT TTTCTGAAGATAAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAACTAATATACAATCAAACATGGTT GTTAAATCTTATGAAAAGTGAATTTACTGAGGGGCGGGAGCTTTTAAAGCCGGCTGGCACCCGGTATGCCTCTAGCTTTG CTACATTGCAAAGCTTGTTGGATCATCGAGTTGGTCTCAGACGAATGTTTCTTTCAAACAAATGGAATACATCCAGGTAC TCCAGCTCAAGCGAGGGGAAAGAGGTGGAAAAATTTGTTTTGAGTGCCACATTTTGGAAGAAACTGCAGCATGTTTGTAA GTCAATAGATCCGATAATGCAAGTACTTCAAAAGGTTTGTAGTGGTGAGAACTTGTCAATGCCATACATATATAATGATA TGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGTGACGATGCACGTAAATTTGAACCATTCTGGAAGGTAATAGAC AGCCATTGGAACTCTCTGTTCTATCACCCTCTTTACTTGGCTGCTTACTTCCTTAATCCATCATACCGATATCGTCAGGA TTTTGTGGCGCACTCTGAGGTAGTACGGGGGCTCAATGAATGCATTGTTCGGCTGGAGCCAGATAATATGAGACGGATCT CTGCATCAATGCAGATTTCTCATTATAACTCTGCACAAGATGATTTTGGAACTGATTTGGCGATTGGCACAAGATCAGGT CTTGAACCAGGTAAACTTGTATATTATTTGCTTGACACTTTATTTAGTGATTCTCACGTTTTGAGGTGCTTTGCTACTTT TGTATGA
Protein sequence (LotjaGi6g1v0217200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPGRSTGFIDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLRMKENLEGCRPNKK QKQVDVQSYMNFGSNDDEDDDEQVGCRSKGKQLMDDRNVAVNLTPLRSLGYIDPGWEHGVAQDERKKKVKCNYCEKVVSG GINRFKQHLARIPGEVAPCKKAPEEVYLKIKENMKWHRTGRRHRRPEAKELMPSYAKSDDEDDEYEQEEDALHHMNKETF IDVDKRFSKDLMKTFKGISPSTCPEPVLRRSRLDNVYLKLPKNQTPQTYKPGKVKTGPTKKSRREVFSTICKFFYHAGIP VQAADSLYFHKMLEAVGQYGQGLVCPPSQLISGRFLQEEINSIKNYLVEYKASWAITGCSILADSWRDKQGRTVINFLVS CPHGVYFVSSVDATNVVEDAPSLFKLLDKVVEEVGEENVVQVITEYTPNYRAAGKMLEEKRRNIFWTPCATYCINRMLGD FLKIRCVEECMEKGQKITKLIYNQTWLLNLMKSEFTEGRELLKPAGTRYASSFATLQSLLDHRVGLRRMFLSNKWNTSRY SSSSEGKEVEKFVLSATFWKKLQHVCKSIDPIMQVLQKVCSGENLSMPYIYNDMYRAKLAIKSIHGDDARKFEPFWKVID SHWNSLFYHPLYLAAYFLNPSYRYRQDFVAHSEVVRGLNECIVRLEPDNMRRISASMQISHYNSAQDDFGTDLAIGTRSG LEPGKLVYYLLDTLFSDSHVLRCFATFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 8 | 64 | 57 | 10.208 | ||
Pfam | 13 | 49 | 37 | 6.9E-8 | ||
PANTHER | 39 | 118 | 80 | 6.5E-303 | – | |
PANTHER | 39 | 118 | 80 | 6.5E-303 | – | |
ProSiteProfiles | 130 | 186 | 57 | 10.968 | ||
Pfam | 136 | 171 | 36 | 3.8E-7 | ||
PANTHER | 159 | 724 | 566 | 6.5E-303 | – | |
PANTHER | 159 | 724 | 566 | 6.5E-303 | – | |
MobiDBLite | 198 | 224 | 27 | - | – | |
Coils | 218 | 238 | 21 | - | – | |
Pfam | 346 | 497 | 152 | 4.3E-58 | ||
SUPERFAMILY | 371 | 666 | 296 | 8.34E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0217200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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