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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0217700 |
| Transcript ID | LotjaGi6g1v0217700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0217700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51975991..51977958) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCCCATATATACTTTCAGAAATAAAATACCAATACCAATGTATGTATATATATAAACCCTGGGTTTCTTTTAGTTGC TTCCCCCGTTTGCCTTTGTCCGCCGCCCTCCGTCGTCCAGTCCGCGCCACTCAGGTAAAAACCGATTCAATTTCACTCCC TCCGACCACTATTTATAGTAGAAAGCTTAATTGCTGTTGGTTTTGAATTGTTATGATTCTCAAATGTAATGATTTGCTTC CCACTATGTTTACCCAAATATGAATCATGAATGACTAGTGGTTTTGAATTGTGATAATATATATGACTATTGATTTTCAC TTGAATTTTATCATTCAAATTGGGTTTGAATCTGTATATGATTATATTATATATCTCACTTCACAATTCTATGTGTCTAT TTCTAGATTCTCCTGTTTTGTCTATATTCTCAAGCAAGCACGCATGAAGATTGAAACCCAAGTTCTGCCTCAAGATTTGA TAACTGAAATTCTTTTGAGGTCGCCGGTGAAGTCTCTTGTACGCTTCAAGGCCGTGTGCAAGTTTTGGCGCTTTCTCATA TCGGATCCCCACTTTGCAATATTACATTTTGAGCTTGCTACTCCTAAACCCATGTTCACAAATTTCCATGAGTCCATTTT CACCATGGACTTAGATGCACCCCTTGACTCTGATCCTTTATCAGAAAAAATTAAAATTGACTTTTTGCCGCCCATCTACT ACTGTACTGAATTTTTGGGTTCATGTAGAGGCTTTATACTATTTGAATGTTATCATCGTTGTGATAATCCTGATAGACCC CTCTACCTGTGGAATCCAGCTACACGTGTTCACAAAACAATACCTCCATCTCCTTTATATGGTCCCCCTAGTCCTATATA TTATGACTTTTATCCTCGTCGATATTCCGAGTACTCAAGGTTTTATCATGTATTTGGTTTTGGGTATGATTCATCAAAAG ATGACTACTTGGTGGTTAAACTCTCCATTCGACCACTTTTTCCCAATAGAGATTTTGCACTTGTGCAGTTTTTCTCATTA AGAGCTAATATGTGGGAAAATATTGAGTTTACTGATTCGCCTTGTTTGGACCTCTCTAAAGAACGAAGACCCGGGTTGCT CTTCAATGGGATCCTTCACTGGTTGGTTTATGACAAAGATAAATCAATGAATGTTATTATTGCTTTTGATTTAATGGAAA AGACACTTTTTGAGATACCTCCACCAGATAATATTGCCCTTGATCATTCATCTTGTAATTTGTGGGGGCATTCAAGTTTT TTGAGTCTATCGCTTGTGGGGAGTGATACAATTGATATATTTGTTATGAAAGAATACAAACTACAATCATCTTGGACCAA GACTCATGTTCTATCTTTCAGTGGTATTCCCTGTCCAGACCAATTAGGCCCAGACCAATTAGGCCCACTGTGTTCTACAA AAAGTGGTGATATTGTTGTGGATTATGATTCAGGAGTACTGGTGAAGTATAATGCTAAAGGAGAACAACTAAGGGTTTGG GAGGACCGTTTTCTTCGTGTATCTCGAGTGCCCATGTATACAGAGTCTATCCTTTCACTCCCTGGGGTGAGTGAGCAAAG CTGAAAATGAAATTGATACTTATTTTTATTGTGAAATTTTAGCTTGAAGCTTACCTAGTTGTTATGTGGGTAATTATTTT TATTTAAAATAAGATTTTTGTTATGTTCTTGAGTAAACTTGATACTACAAATTGTTAGGCAGATGCAAGGGGTATTTATG CAGAAATGATGCCTCCTTGTCCATTTTAACTTGAAGAGTGCAGGAAAGTAGGCAACTTTTGATGAAGAGTGCAGGGAAGC AACTAGCTTTCGTTGTTTTTGACTTATTTTTATTGAAGTAAGTCCAACTCTGTGATGTGTGTAGAAATATATATCCCCAT TTACCCATAGTTTAGGAAAAAAATGTTTTCAACTCATTTCACCATCAT
CDS sequence (LotjaGi6g1v0217700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTGAAACCCAAGTTCTGCCTCAAGATTTGATAACTGAAATTCTTTTGAGGTCGCCGGTGAAGTCTCTTGTACG CTTCAAGGCCGTGTGCAAGTTTTGGCGCTTTCTCATATCGGATCCCCACTTTGCAATATTACATTTTGAGCTTGCTACTC CTAAACCCATGTTCACAAATTTCCATGAGTCCATTTTCACCATGGACTTAGATGCACCCCTTGACTCTGATCCTTTATCA GAAAAAATTAAAATTGACTTTTTGCCGCCCATCTACTACTGTACTGAATTTTTGGGTTCATGTAGAGGCTTTATACTATT TGAATGTTATCATCGTTGTGATAATCCTGATAGACCCCTCTACCTGTGGAATCCAGCTACACGTGTTCACAAAACAATAC CTCCATCTCCTTTATATGGTCCCCCTAGTCCTATATATTATGACTTTTATCCTCGTCGATATTCCGAGTACTCAAGGTTT TATCATGTATTTGGTTTTGGGTATGATTCATCAAAAGATGACTACTTGGTGGTTAAACTCTCCATTCGACCACTTTTTCC CAATAGAGATTTTGCACTTGTGCAGTTTTTCTCATTAAGAGCTAATATGTGGGAAAATATTGAGTTTACTGATTCGCCTT GTTTGGACCTCTCTAAAGAACGAAGACCCGGGTTGCTCTTCAATGGGATCCTTCACTGGTTGGTTTATGACAAAGATAAA TCAATGAATGTTATTATTGCTTTTGATTTAATGGAAAAGACACTTTTTGAGATACCTCCACCAGATAATATTGCCCTTGA TCATTCATCTTGTAATTTGTGGGGGCATTCAAGTTTTTTGAGTCTATCGCTTGTGGGGAGTGATACAATTGATATATTTG TTATGAAAGAATACAAACTACAATCATCTTGGACCAAGACTCATGTTCTATCTTTCAGTGGTATTCCCTGTCCAGACCAA TTAGGCCCAGACCAATTAGGCCCACTGTGTTCTACAAAAAGTGGTGATATTGTTGTGGATTATGATTCAGGAGTACTGGT GAAGTATAATGCTAAAGGAGAACAACTAAGGGTTTGGGAGGACCGTTTTCTTCGTGTATCTCGAGTGCCCATGTATACAG AGTCTATCCTTTCACTCCCTGGGGTGAGTGAGCAAAGCTGA
Protein sequence (LotjaGi6g1v0217700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIETQVLPQDLITEILLRSPVKSLVRFKAVCKFWRFLISDPHFAILHFELATPKPMFTNFHESIFTMDLDAPLDSDPLS EKIKIDFLPPIYYCTEFLGSCRGFILFECYHRCDNPDRPLYLWNPATRVHKTIPPSPLYGPPSPIYYDFYPRRYSEYSRF YHVFGFGYDSSKDDYLVVKLSIRPLFPNRDFALVQFFSLRANMWENIEFTDSPCLDLSKERRPGLLFNGILHWLVYDKDK SMNVIIAFDLMEKTLFEIPPPDNIALDHSSCNLWGHSSFLSLSLVGSDTIDIFVMKEYKLQSSWTKTHVLSFSGIPCPDQ LGPDQLGPLCSTKSGDIVVDYDSGVLVKYNAKGEQLRVWEDRFLRVSRVPMYTESILSLPGVSEQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 377 | 374 | 1.5E-84 | – | |
| PANTHER | 4 | 377 | 374 | 1.5E-84 | – | |
| Gene3D | 6 | 44 | 39 | 7.0E-8 | – | |
| SUPERFAMILY | 7 | 133 | 127 | 4.58E-14 | ||
| SMART | 8 | 48 | 41 | 2.7E-6 | ||
| Pfam | 8 | 44 | 37 | 1.2E-5 | ||
| TIGRFAM | 100 | 316 | 217 | 7.5E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0217700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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