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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0217900 |
| Transcript ID | LotjaGi6g1v0217900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0217900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52009807..52014613) extracted from Lotus japonicus Gifu genome v1.2.
TGTACGAAACCAACTTTTTCAGCATTAAGGAGAATATTCCTTTTATGGTAATTTTGCTATTTTAGTGCTCTGCTAGGGTT TACTTTTTGTCTTTCTCTTACGTAAGCTTGCCCTAGTACAGAACAAGTTAGTTTCATCAAAATGCAGGATATATACCTCT CGTGAATGATGCATGTATGAGATAAAAATAATTATTATTAACACACTGGTTTCAGTGGTTTGTGCAATTGTGCTAGTAGT TACTTTGTCAGATACATGAACAATTTTTGGTTCTTGGTCATGTAATTGTCCAGCTTAAATGTTAATATATAGTGAATGTA TAGCTATGGCATATCATATGGAATTAAGGAAATTTTAAGTAAACATGGTTTTGGTTTATTCTTTCCTTTCCATCTTATTT TACCATTTTTTATTATCGGTATTTTCTTTTTCTATCTAATATATATGTCTCATATTATCTCTTCTCTTTATATCCCTTTT GATGTTTATGAGTTTGAGGTGTAATTAACTTTCAATAATGATATACTCACACCTCACTTTTTATACACTTCATTTTCACA TATTTTTATTTCTATCTCTCTCCTCTTATCATCTATTATATATTATATTTTTTCTCTCTTATTAATTCTTTTTATTCCTA TCTCTCTCATCCTCCACCTCATCTTCGAGGTGTGAATGAACCATTATTCTTTTATTTCTGTTAGAATTTGGAACTAAGAA TATTTTTTAGATGAGCGGTTAGAATTGAATTAGAGATAAAATTGTACAAATATTATATTTAGTCTCTTGAATTCACATCA CTTCTCTATCCCAAATCCTCTCACCACTGTCTTGTTCCCTTTCTCTGCTTCATGAGGAAGGCTTTGAAAGCCTCACAAAA CTCATCTCATTTCCCTTTTTGTTGGCCGACCACCACCAAGGAGAAAGGTCAAAGGCCACCATCATGGAAGGGAGGGAAGA CGTCGCCAACTCCACCATCTCCTTCCATTTTATAGTGAAGCTTCTTATGAATGGCTTTATTCATGACTTGAAAAGAGTAG GGTGACCCAAAAACAACTAAAAACACAATTCCATTCAGATTTGAAATTTTACGGTGAACAACTCTGACTTAATTATAAAT GGAGTTTGTGGCCAGCTTGTTGAGTTTCAGGAGAAACGGATACCACCACCGCGCTCCTTAGCACAAGAGGAAGATGATCC ACTACTCAGTTTCAATTCCGGCGACAAATCAGCCGCATCTCCGTCGTGAACCACTGCGGTCTAATGAGAATGGGAAGTGA TCTTCATTAGGAAGAAGAAGAAGTGAAAGGGAAGAGAGGAAAAGAAGAGAGATGCTTCTGAGGCGCTCAGGAAGTAAATA AGAAAGCTTTTCAGAGTTTTCATGGAGGAAAGTGAAAGTTGATGGTGGTGATGGTGATGGTCTGAGACATGATGGTGGTG TTTATGAGGAAGAAGAAAAGTGAGAGTGAAGAGAGGAAAAGGAAAAGAAAGATGCTTCTCAGGTGAAACGTGGATGCTTT TTGGAGTTTTCATAGAGGAAAATGAGATCCATAATGGTGGTGATTGTCTCATATAGTGTGTGTTTGGTTTTAAATTTGGA GAGGTCAAACGTGGATCCAAAAATCTAAAAGTAACTATTTCTTGCTTCTGAAAACGTGGATCGGGGCCAAATGTGAATCC TGATTGAGTTTTCCAAACACACTTCAATGGTGGAGTTCATGAGAAAGAAAAAGTAAAAAAATGGATCATGGATGGGAGTG GGACTATGAAAGTAAAGAGAGGAAATTTCAAATAGACATTATAACCTATGGTCGTCCTAGACAAAAAGACGACCCTGAAC TTTGTCTTGATTTATAGTGACTTATCTTCTCTCCATCATGCATACTATTCATTTTTTAACACGAACAATGAATCTATTCT CATCTAGTTATGGTGGTCGTCACTCACCGAATAACTAAGTGCCCCAACCAACTCTAGCAGGATACGATGAAGGCATAGGG GAAAGCCCCATCCTCCTACCACCTTTGGAAAATCAGATGCCGCTAAGGATCACTCGTCCAACCCAGCAGACCCAACGACA CCCAGTGGAGGAGGCTCCTAAATGACCTTCAAGTCCTACACAACTTGGAGCAGCACTTAGGCCACATAGACCGTCCCATT GATGTTCGTGCAGTCCAAGGAAACCTTGTACCATTGCACTACAATATGAGCCTTGAACAAGTTCCGATAGCCAACCACAG TGCACACAAAGATTACCAAGAGACATCTGCGCAGCAAAAGAAAATTTATCATAACAAAAAAAGAGCACGCTGAAGTAAAA GTATCTACGCTCTACGGATGTTGATTTTAGAAGAACTCCTTATGCTGAAATGCTCAAATTCTGAAGGATGTTCATGCTAA TATTCCTATTTTGTTGTATTTTACATTTACTTGATATTATTCTAAAAAATATTATATTTATGTGATCAGATATTTAATAT AAATTTTTTTGAAACTAAATATTTAATATAACCTAAACTTATAAAAAAGTAATAAATCTAGAAAAATACGTTTTCCATGA TATATTTTGAAATATTTTAATGCTAATATTCCTATTTTGTTGTATTTTACATTTACTTGATATTATTCTAAGAAATATTA TATTTATGTGATCAGATATTTAATATAACTTTTTTTGGAACTAAATATTTAATATAACATAAACTTATAAAAAAGTAATA AATCTAGAAAAATACGTTTTCTATGATATATTTTGAAATATTTTAATAATATTAACTATTATATAAAAAACTATTGAATA AAATTGGGATGATCTGTTCAAAAAAAAATTGGAATGATACAAAAATAGACAAAATATGACTTTTTTGATGATAACTGAAT AGTAAAAACATTCATAATATAACTCAAAATTTAAACAAGATTGTTTTTTGAAACCAAAATTTAAACATATATTTCAGAAT TTTAGAAGAAATAACTGGTTTATTTTTATCATTAATAACAAATATTTTCAAATAAAATAAAGCCCATATATACTTTCAGA AATAAAATACCAATACCAATGTATGTATATATATATAAACCCTGGGTTTCTTTTAGTTGCTTCCCCCGTTTGCCTTTGTC CGCCGCCCTCCGTCGTCCAGTCCGCGCCACTCAGGTAAAAACCGATTCAATTTCACTCCCTCCGACCACTATTTATAGTA GAAAGCTTAATTGCTGTTGGTTTTGAATTGTTATGATTCTCAAATGTAATGATTTGCTTCCCACTATGTTTACCCAAATA TGAATCATGAATGACTAGTGGTTTTGAATTGTGATAATATATATGACTATTGATTTTCACTTGAATTTTATCATTCAAAT TGGGTTTGAATCTGTATATGATTATATTATATATCTCACTTCACAATTCTATGTGTCTATTTCTAGATTTTCCTGTTTTG TCTATATTCTCAAGCAAGCACGCATGAAGATTGAAACCCAAGTTCTGCCTCAAGATTTGATAACTGAAATTCTTTTGAGG TCGCCGGTGAAGTCTCTTGTACGCTTCAAGGCTGTGTGCAAGTTTTGGCGCTTTCTCATATCGGATCCCCACTTTGCAAG ATCACATTTTAAGCTTGCTACTCCTAAAGTCATGTTCACTCTCATTCAAGGCATTTTCACCGGGGACTTAGATGCACCCT TTGACTCTTATCCTTTTTCAGAAGAAATTCAAGTTGACTTTGTGCCCTACTATGGTACTATATTTTTGGGTTCATGTAGA GGCTTTCTACTATTTGAAGTTGGTTTTGATAATTTTGACATACACCACTACCTGTGGAATCCAGCTACACGTGTTCACAA AACAATACCTCCATCTCCTTTATATGGTCCTCCTAGGCCTATATATGGCTTTAATCCTCGTCGATATTCCGAGTACTTGA GGTTTCGTCATGTATTTGGTTTTGGGTATGATTCATCAAAAGATGACTACTTGGTGGTTAAACTCTCCATTCGACCACTT TTTCCCAATAGAGATTTTGCACTTGTGCAGATTTTCTCATTAAGAGCTAATATGTGGGAAAATATTGAGTTTACTGATTC GCCTTGCTTGGACCTCTCTAAAGAACGAAGACCCGGGTTGCTCTTCAATGGGATCCTTCACTGGTTGGTTTATGACAAAG ATAAATCAATGAATGTTATTATTGCTTTTGATTTAATGGAAAAGACACTTTTTGAGATACCTCCACCAGATAATATTGCC CTTGATCATTCATCTTGTAATTTGTGGGGGCATTCAAGTTTTTTGAGTCTATCGCTTGTGAGGAGTGATAAAATTGATAT ATTTGTTATGAAAGAATACAAACTACAATCATCTTGGACCAAGACTCATGTTCTATCTTTCAGTGGTATTCCCTATTCAG ACCAATTAGGCCCACTGTATTCTACAAAAAGTGGTGATATTATTGTGGATTATGGAACAGAACTGGTGAAGTATACTGCT AACGGAGAACAACTAAGTATTTGGGAGCATCGTGGTTGTCCTCGTGAATCCCGAGCGCCCATGTATACAGAGTCTATCCT TTCACTCCCGGGTGTGAGTGAGTAAAGCTGAAAATGAGATTGATGCTTATTTGTATTGTGAAATCTTAGCTTGAAGCTTA CCCAATTGCTTTGGGGGTAATTATTTTATTTAAAATAAGATATTTGCTATGTTCTTTAAGTAAACTTGATACTACAATTG TTAGGCAGAATTTAGTGGTATTTATGCACAAATGATGCGTACGTCCTTGTCCTTGTCCATTTTAACTTGAAGAGTGCATG AAAGTAG
CDS sequence (LotjaGi6g1v0217900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATATATATATAAACCCTGGGTTTCTTTTAGTTGCTTCCCCCGTTTGCCTTTGTCCGCCGCCCTCCGTCGTCCAGTC CGCGCCACTCAGATTTTCCTGTTTTGTCTATATTCTCAAGCAAGCACGCATGAAGATTGAAACCCAAGTTCTGCCTCAAG ATTTGATAACTGAAATTCTTTTGAGGTCGCCGGTGAAGTCTCTTGTACGCTTCAAGGCTGTGTGCAAGTTTTGGCGCTTT CTCATATCGGATCCCCACTTTGCAAGATCACATTTTAAGCTTGCTACTCCTAAAGTCATGTTCACTCTCATTCAAGGCAT TTTCACCGGGGACTTAGATGCACCCTTTGACTCTTATCCTTTTTCAGAAGAAATTCAAGTTGACTTTGTGCCCTACTATG GTACTATATTTTTGGGTTCATGTAGAGGCTTTCTACTATTTGAAGTTGGTTTTGATAATTTTGACATACACCACTACCTG TGGAATCCAGCTACACGTGTTCACAAAACAATACCTCCATCTCCTTTATATGGTCCTCCTAGGCCTATATATGGCTTTAA TCCTCGTCGATATTCCGAGTACTTGAGGTTTCGTCATGTATTTGGTTTTGGGTATGATTCATCAAAAGATGACTACTTGG TGGTTAAACTCTCCATTCGACCACTTTTTCCCAATAGAGATTTTGCACTTGTGCAGATTTTCTCATTAAGAGCTAATATG TGGGAAAATATTGAGTTTACTGATTCGCCTTGCTTGGACCTCTCTAAAGAACGAAGACCCGGGTTGCTCTTCAATGGGAT CCTTCACTGGTTGGTTTATGACAAAGATAAATCAATGAATGTTATTATTGCTTTTGATTTAATGGAAAAGACACTTTTTG AGATACCTCCACCAGATAATATTGCCCTTGATCATTCATCTTGTAATTTGTGGGGGCATTCAAGTTTTTTGAGTCTATCG CTTGTGAGGAGTGATAAAATTGATATATTTGTTATGAAAGAATACAAACTACAATCATCTTGGACCAAGACTCATGTTCT ATCTTTCAGTGGTATTCCCTATTCAGACCAATTAGGCCCACTGTATTCTACAAAAAGTGGTGATATTATTGTGGATTATG GAACAGAACTGGTGAAGTATACTGCTAACGGAGAACAACTAAGTATTTGGGAGCATCGTGGTTGTCCTCGTGAATCCCGA GCGCCCATGTATACAGAGTCTATCCTTTCACTCCCGGGTGTGAGTGAGTAA
Protein sequence (LotjaGi6g1v0217900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYIYINPGFLLVASPVCLCPPPSVVQSAPLRFSCFVYILKQARMKIETQVLPQDLITEILLRSPVKSLVRFKAVCKFWRF LISDPHFARSHFKLATPKVMFTLIQGIFTGDLDAPFDSYPFSEEIQVDFVPYYGTIFLGSCRGFLLFEVGFDNFDIHHYL WNPATRVHKTIPPSPLYGPPRPIYGFNPRRYSEYLRFRHVFGFGYDSSKDDYLVVKLSIRPLFPNRDFALVQIFSLRANM WENIEFTDSPCLDLSKERRPGLLFNGILHWLVYDKDKSMNVIIAFDLMEKTLFEIPPPDNIALDHSSCNLWGHSSFLSLS LVRSDKIDIFVMKEYKLQSSWTKTHVLSFSGIPYSDQLGPLYSTKSGDIIVDYGTELVKYTANGEQLSIWEHRGCPRESR APMYTESILSLPGVSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| Phobius | 28 | 416 | 389 | - | – | |
| Gene3D | 37 | 130 | 94 | 4.0E-8 | – | |
| ProSiteProfiles | 45 | 95 | 51 | 8.756 | ||
| PANTHER | 47 | 409 | 363 | 6.3E-80 | – | |
| PANTHER | 47 | 409 | 363 | 6.3E-80 | – | |
| SUPERFAMILY | 50 | 104 | 55 | 3.27E-13 | ||
| SMART | 51 | 90 | 40 | 5.1E-6 | ||
| Pfam | 51 | 87 | 37 | 1.2E-5 | ||
| TIGRFAM | 140 | 371 | 232 | 8.6E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0217900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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