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LotjaGi6g1v0218000.3

Overview

Field Value
Gene ID LotjaGi6g1v0218000
Transcript ID LotjaGi6g1v0218000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Deaminase-related family protein; TAIR: AT5G28050.3 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|O34598|GUAD_BACSU Guanine deaminase; TrEMBL-Plants: tr|G7IQF5|G7IQF5_MEDTR Cytidine/deoxycytidylate deaminase family protein; Found in the gene: LotjaGi6g1v0218000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:52045021..52046208) extracted from Lotus japonicus Gifu genome v1.2.

ATCATCCCAGTGGTGCAGACTAAGAATGGAACTGTTGCAGTAGCATCTGCATTTGCTGGCCATCAGGAAGGTAATGCTTC TAAACGCTTTAGCTCACTTGCTGCACTGTTTCTTTGATTATGAAGGAAACATGTTTGATGTATTGATACATTGAGGTCCT CTCTTGATTGATTGATTCTTCAGTATTCACCCCTTAATTTCATCATTTCTGATTTGGTTATTCATATTGGAAAACATTGG ACTAGATGATCAATTATTACTTTGCTTCTGGTGTTGTATTGGCCAATCAGCTATACAGGATAGAGACCACAAATTTTTAA GAAAGGCCATTGGAGAAGCATATACAGGGATAGAATATGAAGATGGAGGACCTTTTGGTGCTGTTATAGTTTGTAATGAT GAAGTAGTTGCTAGTTGTCACAACATGGTTCTGAGGAACAATGATCCAACTGCTCATGCTGAAGTCACAGCTATAAGAGA GGTTAGATTATAAGTTGCCAAATAATTTCCTTAAATTAATGGCATTAAAATCCATGTTTTCATTTTGAACAATGTAGGTT ACCTTTATGCTTTTCTATCTGACTGATGCAGAGTTCATCATAGCAAAAGAGGGATATGCCCTGCCCCCTTTAGCAATTGA TTATATATGTGCAATTCTTTATTCTTGTAATGCAATGAAGGGTGTTCACAATTAGACAACAATGATTTGATTAAATTTTT TCTAAAGCTAACTTAATTTATGGAACTATTGGAAATTTAATGATAAACCCATGATTTGATTTTGCAGGCTTGTAAGAAGC TAAATCAGATAGAACTTTCAGAATGTGAAATATACTCTTCTTGTGAACCTTGTCCAATGTGCTTTGGTGCAATCCACCTT TCACGAGTTAAGGTTGAAATTTCCTATGCTTCTCTCTTTCTTCTGGTATTTCTGTTTTACTGATTACCAAGCTTATCTTA ATTTGGATAAACTTTCTTACAATTTTTCTTTTTAAATAGAGGTTGGTTTATGGTGCAAAGGCAGAGGCAGCAATTGCAAT TGGGTTTGATGATTTTATTGCTGATGCATTGAGAGGCACTGGGTTCTACCAGAAAGCATGCTTGGAGATTAAAAGAGCTG ATGGCAATGAGGCCATCATTGCTGAAGAAGTTTTTCAGAAAACAAAAGAAAAGTTCAGAATGTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0218000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCTGAGGAACAATGATCCAACTGCTCATGCTGAAGTCACAGCTATAAGAGAGGCTTGTAAGAAGCTAAATCAGAT AGAACTTTCAGAATGTGAAATATACTCTTCTTGTGAACCTTGTCCAATGTGCTTTGGTGCAATCCACCTTTCACGAGTTA AGAGGTTGGTTTATGGTGCAAAGGCAGAGGCAGCAATTGCAATTGGGTTTGATGATTTTATTGCTGATGCATTGAGAGGC ACTGGGTTCTACCAGAAAGCATGCTTGGAGATTAAAAGAGCTGATGGCAATGAGGCCATCATTGCTGAAGAAGTTTTTCA GAAAACAAAAGAAAAGTTCAGAATGTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0218000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLRNNDPTAHAEVTAIREACKKLNQIELSECEIYSSCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFIADALRG TGFYQKACLEIKRADGNEAIIAEEVFQKTKEKFRMF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd01285
1 72 72 5.91408E-33 –
PANTHER
PTHR11079
1 114 114 2.9E-75 –
PANTHER
PTHR11079:SF170
1 114 114 2.9E-75 –
Gene3D
G3DSA:3.40.140.10
1 116 116 3.5E-32 –
ProSiteProfiles
PS51747
1 73 73 17.505
IPR002125
SUPERFAMILY
SSF53927
2 74 73 1.68E-26
IPR016193
Pfam
PF14437
5 65 61 1.0E-16
IPR028883
ProSitePatterns
PS00903
11 48 38 -
IPR016192

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0002100
Biological process TRNA wobble adenosine to inosine editing The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine.
Subterm of
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008251
Molecular function TRNA-specific adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a tRNA molecule.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0218000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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