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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0218800 |
| Transcript ID | LotjaGi6g1v0218800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G20870.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9M088|E135_ARATH Glucan endo-1,3-beta-glucosidase 5; TrEMBL-Plants: tr|A0A1J7GAD3|A0A1J7GAD3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0218800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52100427..52103222) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGTTGTTATAGAAATCCCCCAAATGTTCATGACTAGGAACGTTAGAAACTCTTGTTCTTTACGCCGTTCTTGTTTTT CCTTCCACATGTTTAATACCATACCAGAAAAATTCCCAAACCTTTTTACATAAACACATTAGCTAGAAATTTGAGAGAGC TAGGGAGAAACATGAGACATGTACATATATTTTCTTACATTTTGGTGGCGGTGGCACTTTGCCTGCTCTGCCCACGTGCG GCGGCGGGCTTTGCCTGCAACTGGGGAAGAGTGGCAACGAATCCCCTTCCCGGAGACATAGTTGTGCGTCTCATGAAGGA CAATGGATTCGATAAGGTCAAGCTTTTTGAGGCTGATCCTGAGGCCATGAAGGCTCTTGCAAAATCTAATATTCAGGTTA TGGTTGGAATTCCCAATGATCTTTTGGGAACCTTTGAGAACAACACCAAAGCTGCTGATGATTGGGTGGCTCAAAACGTT TCAGCATATGTCAAAATTGGAGTCGACATAAGGTAGTTAATAAGTAATCTACATTAACACTAATGGAACTACAACCTTAT AGATTGTGGACTTATAGAAATAATTATGCAATTCAAAGTTATGATTATATACTTGAGCTTCTCTGTTCTTGCAAATTAAG TCATACATGAAATTAAAATTAAGGGTTTTTTTTCCTTAGATACAAGCATAAATAATTTGTTCACAACCAATAAAAAGATT TATTCATAGCAATTGAGAGCTTTATTGAGAACTTTGAGAAATAATCTTTCTCAATACACAATAGATGAGGCATCCCACAA AGTAAAAATTTCACCTAAAAACGACATAAGTTAGCAAACACCTCTTGCAAAGTGCTTATTTGATGAAGGAAAACAGTAAC ATTAACTTGGCACATTAATTATAGGTATGTTGCTGTGAGCAATGAAGCATTCCTCAAGGACTTCAAGGACAGATTCATAT ACAGCGTCCTTCCAGCCCTCAAAAACATCAAATCCTCCCTTGACAAAGCAGGACTAGGCAAAAAGGTGCAGGTCACAGTC CCTCTAAACGCAGACATCTACGAAACCGACACTAACCTTCCATCAGGAGGAGATTTTCGTGCAAATGTCACGGACCAAGT CGTCGCAATCCTCAAGTTCCTCAACAACAACAACGCCCCCATTGCCATCAACATCTACCCCTTCCTCAGCCTCTACTACG ACTCCAAGTTCCCCAAAGACTTCGCCTTCTTCAACGGCTCCTCCACCGCGTTAGTTGACGGCGATGTCACATACACCAAT GCTTTTGATGGAAACCTCGACACCCTTGCGACCGCACTGGAAAAACACGGAGGTATGAGTCATTTCACTTATATATTATT CATAACTCTCAACGCGAATTTATTTATTTATTATTACCTACTTACACTTGAAGAATCCTCAACAGTTGGATCAATGCCGA TCATAGTTGGAGAAGTTGGGTGGCCGACAGACGGCGACTCAAATGCCAACAATGCCAACGCTCAGAGATTCTACCAAGGC TTGATTGATCGCATCAACAGCAAAAAAGGACCCCCTAAGAGGCCTAATTCGATGCCAGAAGTGTACATGTTCGGATTAAT CGATGAGAATTCCAAGAGTGTTCTACCAGGGAACTTTGAACCGCATTGGGGGATTTTCAACTATGATGGAAGCATTAAGT ACCAACTGGATTTAGGTAAAGGGAAAAAGCTCGTCCCGGCGAAAGGGGTGAAGTACCTTGAGAAACGATGGTGTGTGCTT GATCCGAAAGCGAGCCCTGAAGACCCCAAGATGAAGGAGAATTGGAAGATTGCGTGTGGGGCGTCAACAGGATGCACTAG TGTGAGCAATGGTTCATCTTGTGAGAAGATGGATAATAGGACCAAAGTTTCTTTTGCATTCAATTCGTTCTACCAAGTGA CTAATCAAAACAAAGATGGGTGTGTGTTCAATGGTCTTTCAATTATCACCAACAAAGACCCTTCACCCTCTAATGGAACT TGCAAATTTGATATTGCACTTGACGTGGGGCAACTTGCCTCAAGCCCTGCACCTTCACCATCTGCATCTGTACTTGCAGA TGCACCCACTGGTCCTTCTGGTGGGTCTAAAGTGTCTGACCCTGACTCCAACAAGTCCCTGGCTGTGGCAACAGAGCAAC CAAACCCAATTGTCATGGTGGTAATGGTGCTAAGTTTGTTGTTTGTTATCCTATGATCTCATCTTAGCTAGTGAGTTATG GTTAATGTATAATAACAAAAATGAGTATTGGACATTCACTTTCAGCGATACACAATTCACACTTGCAATTTGTGGAGCTT TTGACAGGTTTTTTACCGTCATAAATTGCAAAGTTAAAAGAAATGATACACAAAGATGATTCTCGCTACAAATTGCAAAT GGCAATTATGTGTTGCGGAGAGTATTGTCTATCTGGCGTGACTCATTTGTATCCTGCATTGTAGGGCTAGGATAAACCAA TATTAATGTTGTAAGAGTCCAGTTAATTAATATAGTCTGGACTTCTATATCTTTGATATTAGTAGGGATTTAATGTATAT ATACAGTACGCGATCTGTATAAAAGAAAGGCTTAAATAAGTTTTTGGTCCCTAACCTTTACCATATGTTTGATTTTGGTC CCTCGCCGGAGTAAAGGTGGGTTTTAGTCCCTAACCTTTGTTAAAAGGTTTGATTTTGGTCCCTCCGGAGCTATGGGTCA ACGCCGGAGCTCCGGTGGCATGGCCACGTAGGACTATTGAGCTGATGTGGATTTTTTTTCATTTTAAATATTAAAA
CDS sequence (LotjaGi6g1v0218800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACATGTACATATATTTTCTTACATTTTGGTGGCGGTGGCACTTTGCCTGCTCTGCCCACGTGCGGCGGCGGGCTT TGCCTGCAACTGGGGAAGAGTGGCAACGAATCCCCTTCCCGGAGACATAGTTGTGCGTCTCATGAAGGACAATGGATTCG ATAAGGTCAAGCTTTTTGAGGCTGATCCTGAGGCCATGAAGGCTCTTGCAAAATCTAATATTCAGGTTATGGTTGGAATT CCCAATGATCTTTTGGGAACCTTTGAGAACAACACCAAAGCTGCTGATGATTGGGTGGCTCAAAACGTTTCAGCATATGT CAAAATTGGAGTCGACATAAGGTATGTTGCTGTGAGCAATGAAGCATTCCTCAAGGACTTCAAGGACAGATTCATATACA GCGTCCTTCCAGCCCTCAAAAACATCAAATCCTCCCTTGACAAAGCAGGACTAGGCAAAAAGGTGCAGGTCACAGTCCCT CTAAACGCAGACATCTACGAAACCGACACTAACCTTCCATCAGGAGGAGATTTTCGTGCAAATGTCACGGACCAAGTCGT CGCAATCCTCAAGTTCCTCAACAACAACAACGCCCCCATTGCCATCAACATCTACCCCTTCCTCAGCCTCTACTACGACT CCAAGTTCCCCAAAGACTTCGCCTTCTTCAACGGCTCCTCCACCGCGTTAGTTGACGGCGATGTCACATACACCAATGCT TTTGATGGAAACCTCGACACCCTTGCGACCGCACTGGAAAAACACGGAGTTGGATCAATGCCGATCATAGTTGGAGAAGT TGGGTGGCCGACAGACGGCGACTCAAATGCCAACAATGCCAACGCTCAGAGATTCTACCAAGGCTTGATTGATCGCATCA ACAGCAAAAAAGGACCCCCTAAGAGGCCTAATTCGATGCCAGAAGTGTACATGTTCGGATTAATCGATGAGAATTCCAAG AGTGTTCTACCAGGGAACTTTGAACCGCATTGGGGGATTTTCAACTATGATGGAAGCATTAAGTACCAACTGGATTTAGG TAAAGGGAAAAAGCTCGTCCCGGCGAAAGGGGTGAAGTACCTTGAGAAACGATGGTGTGTGCTTGATCCGAAAGCGAGCC CTGAAGACCCCAAGATGAAGGAGAATTGGAAGATTGCGTGTGGGGCGTCAACAGGATGCACTAGTGTGAGCAATGGTTCA TCTTGTGAGAAGATGGATAATAGGACCAAAGTTTCTTTTGCATTCAATTCGTTCTACCAAGTGACTAATCAAAACAAAGA TGGGTGTGTGTTCAATGGTCTTTCAATTATCACCAACAAAGACCCTTCACCCTCTAATGGAACTTGCAAATTTGATATTG CACTTGACGTGGGGCAACTTGCCTCAAGCCCTGCACCTTCACCATCTGCATCTGTACTTGCAGATGCACCCACTGGTCCT TCTGGTGGGTCTAAAGTGTCTGACCCTGACTCCAACAAGTCCCTGGCTGTGGCAACAGAGCAACCAAACCCAATTGTCAT GGTGGTAATGGTGCTAAGTTTGTTGTTTGTTATCCTATGA
Protein sequence (LotjaGi6g1v0218800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRHVHIFSYILVAVALCLLCPRAAAGFACNWGRVATNPLPGDIVVRLMKDNGFDKVKLFEADPEAMKALAKSNIQVMVGI PNDLLGTFENNTKAADDWVAQNVSAYVKIGVDIRYVAVSNEAFLKDFKDRFIYSVLPALKNIKSSLDKAGLGKKVQVTVP LNADIYETDTNLPSGGDFRANVTDQVVAILKFLNNNNAPIAINIYPFLSLYYDSKFPKDFAFFNGSSTALVDGDVTYTNA FDGNLDTLATALEKHGVGSMPIIVGEVGWPTDGDSNANNANAQRFYQGLIDRINSKKGPPKRPNSMPEVYMFGLIDENSK SVLPGNFEPHWGIFNYDGSIKYQLDLGKGKKLVPAKGVKYLEKRWCVLDPKASPEDPKMKENWKIACGASTGCTSVSNGS SCEKMDNRTKVSFAFNSFYQVTNQNKDGCVFNGLSIITNKDPSPSNGTCKFDIALDVGQLASSPAPSPSASVLADAPTGP SGGSKVSDPDSNKSLAVATEQPNPIVMVVMVLSLLFVIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| PANTHER | 15 | 464 | 450 | 5.1E-198 | – | |
| PANTHER | 15 | 464 | 450 | 5.1E-198 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 500 | 475 | - | – | |
| Gene3D | 27 | 352 | 326 | 1.6E-104 | – | |
| Pfam | 28 | 345 | 318 | 2.2E-64 | ||
| SUPERFAMILY | 30 | 345 | 316 | 2.44E-74 | ||
| ProSitePatterns | 260 | 273 | 14 | - | ||
| SMART | 364 | 451 | 88 | 2.3E-21 | ||
| Pfam | 365 | 434 | 70 | 3.6E-13 | ||
| MobiDBLite | 466 | 495 | 30 | - | – | |
| Phobius | 501 | 518 | 18 | - | – | |
| Phobius | 519 | 519 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0218800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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