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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0219100 |
| Transcript ID | LotjaGi6g1v0219100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G43270.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32; TrEMBL-Plants: tr|A0A0B2SEU6|A0A0B2SEU6_GLYSO Pectinesterase; Found in the gene: LotjaGi6g1v0219100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52149934..52153870) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCAAGTCTCTTCCTCCTGCTCTTCTTCCTCATATAATCTCCTCCTCCTCCACCAAGCTTCCTTATTAATCACCTTCA ACAATACATCTCACACCATGTCAACCACCCGGTCCACCCCCACACTCATCTTCTTCTTCTTCTTCCTGGCCCTATGCTAT AACCCCTCATATGGTGCTGCACAAACATCAAACTTCATCCACACTGCAAGAACAGTACGTCATGTTCTCAACGATGTCAC CAACGTACTACGGGATGAGCTGAGCACCATGGGCAGCGTTGACAACTCTCGGTTGTCCAACGCCATATCGACATGTTTGG AGCTGCTGGATTTGTCAACAGACGAGATCGGTCGGTGCATGTCAGCATTTGAGGGCTCCGAAGGTATATCATCAGTTACT GTGTACATACATGCTGCAGTTCTTACAATTTTTTTTTTAATAAACCTGTAGTACGTTTTTACAAATATTTATTTTTAAAG TAATGCAACTTTTTTTTTAATTATCAAGTTAATTAGTATATTATATAGAACCTTTGTGCTAACGGGATGTTTTGTACTGT TGTATCCTCACATGTGACTGAGATGTTTTTTTCTTATGCTTATTATTGAAATTTGTTGAGCTTTCGAAAAAGAAAAAAAA TCTGGTGTAACTATATTATTTTGAAATTGCCACTGCCAGTAGCTACACCTCATTTTTGTTATTTACATTCATTTACTAGT GACGGAAAGCAACCGTCACAAAATCCTAGCATATAATATAAAGAAAGTAGTGACGGACTTTATCCCTCTCAAAACTCCGT CGCTAATCATTTCCTATCTCCACTAGGATTTTGTGACGGTTTACGTTCGTCGTAAAGAGTATTCCGTCGCTAACTAATTT GGGACGGAAAACTTCTACCTTCCTTTATGCTAGGCATTTGTGACGGGTTTGTTTTCGTCACTAGCTGAAAAAGTTAAAAA TAAAAATAAAAATATCGCTACTGGCAGTGGCGATTTCAAAAGAAAGAAAAAGTGAAGTAGCTTAGTAATTAAAAAACAAT TGCACTACTTTGGTAATTATTTGTTTAAACTATACTATACATGTAGTGGTGGAACTAGGAAAAAAATTTGAAGGGACCAA AGTAAGTAAGATTTCAATACATGAATATACACACATAAAAATAAAGATTAGACTATATTTATATACATGAATATAAATAT TGAAATTTTATAATAAGTTTTTTCATGTTTTAAAGTTTTTAGAATTGATAAATAGTTTTTTACCTTTAAATGACCTTTTT ATAACTATATATTCACACAAGTCTTTCACTAAAAAAAAAGAGATTCTTGTACTTTTGGTTGTTAGTCTTTTAGAGAAATT TATCAAAAAAATAAAATAAATAATTGATTTATTAAATGAATTATTTTACTCTTTGCTTGATAAATGTTGTTATCTTAAAA TTGATTTCTTTTCAAATCTCATTTTCTATGAAAATTCAATAGAATTTGCAACGTTATATATATATATATATATATATATA TATATATATATATATATATATATTGTTTTCTGGGCTATGAAAAAGTTAAGGAGCAGCCCAGCCCAGGAAAAAACACAATA AGGAGCAGCCCAGAGAGAGATTTGTAAAAAATGTAAAATATTACTTTAAAAGTCAGGAACGGGAATCGAAACATGCCCCG GAGTAATAACGTGAGAATACCCCACTTACATATATTTTCTGCAATGTTTTATATATATAAAGAGTTTAATGGATATGCAC TGACAGTATAAAATAGTTTTACACAGACATCCAATTGAATTCCGTCAAATCAGAAAATATCTTATTTTTTTAATTAAAAT TAAAGTCAAATGTAATTATCTCTCATATGTGCATGCTTTGATTGGATGACTGTGTAAAACTATTTTACACTATATCCATT AAACTCATATATAAAAACTGTTATGAAAAAGTTCTACATCATATGTCATAGAAAATTTTCTATAGCCCCCTATGTCCCTT CATGGTTTCACGCATGCATGTAAAAAAACTGTTACTGTGTATTGAGCTATTTTCTTCGTTTCCTACTTTCCTTGTTGGAT GTTGGCTGTAGTTTTCTAATGGTTTTGATTTTGTTCTTTTTCTTTTTGTTCGAAAAATAATGATTCATTCATGATGGGTC AAAGCCCAAAAGAAGTAGTCTTTGCCACAATACAATCAGCCATTTCCACAGACCCGTGTTAATTGACAATATAGAACGTG AGCCTGTTAGCTGACGGGAGAAGCAAAAACAGACTAGCAAGTGTCCTGGCATCAACTATTTCCCACTATTTGAGACCAAA AAAAACTGTTTCCCACTATTAACTCTATTTTTCTTATCAAAAAAATTTGATGAAGGCCTGGATATTAATGCTAAAATATA TTAATTAACTTCTTTTTTTTATAAGCGTAAAAGAGATTAATAATAATTTTTGAACGAAACAAATAGATTAATAATATAAG TTGGTTGTGTTTATAATTTAAATTTATAAGACCATGGGTTATACTTTGAGAGTTTTTTAGGGCGTCTCCTATAATATAAT TTAAGTTAATATTGTTTTGTCTTAGGCAAGCATGAGGGTACTGGAAATTTGAGTTCAGATTTGAGGACATGGCTGAGTGC TATAGTTGCTGATACACATACATGCATGGAGGGTTTTGAAGGCACCAACAATGGTCGTGTGAAGGATCTGATATCCCCCA AAGTTGACCAAGTGAACTCGCTAGTTCATGAGCTTTTCACCCTTGTGCATCATGTTTCACATCAGTCCAACAGCCAAGGC CAGGGTGAACTTCCTCCGTGGGTTGATCCTAGGGACTTGCAGTCCAATGTAGATCTTCCTGATGCTATAGTTGCTGCTGA TGGGAGTGGAGAGTTCAAAAGCATCATGGATGCAGTGCGTGCAGCTCCAGACTTTAGCAGCAGACGTTATGTCATCTACA TAAAAAGAGGAGTTTACAATGAGATAGTTAGCATAGGGAAGAACAAGTGGAACTTGAAAATGGTAGGAGATGGTATGGAT CTCACTGTCATCTCTGGAAGTTTGAGCTACCATCAGAATTTGACCACATACTACACAGCTACCTTGGGTAAGAACACTCC AAATATACAGCTAATTAATATATTAATATATTTGATATTTTTCTCATTTTTCTTCCACTTTATGTTTGAAGGTGTCGATG GAAGAGGGTTTATAGCACAGCGCATATCCTTCAGGAACACCGCAGGGCCTGAATATCATCAAGTTGTCGCTTTGAGATCA GCAGCTGATCTTTCGGTCTTTGACGAATGTGAGATTTTCGGTTACGAAGACAGTTTGTATGCTTATTCACAGCGACAGTT CTACAGATATTGCTACATCAGGGGCACGGTGGACTTCATATTTGGACACGCCTCTGCGGTTTTCCAATCCTGCAATTTAT TGGTCAAGAAAGGATTGCCAATGCAAAAGAACACTATCACAGCCCAAGATAGAACAAGCTCAAGCCTAGCATCTGCGTTC TCCTTCCAGTTCTGCAAAATATCAGCAGATCTCGACCTTCTACCCTTCGTTGGCTCCATATCGACATACCTTGGAAGACC ATGGAAGCAATATTCTAGAGTTGCTTTCATGCAATCCTACATGAGTGATGTGGTGAGCCCTGAAGGATGGTTGGAGTGGA GTGGTACATTGTATTTAGACACATTGTACTATGCTGAGTACAATAACTATGGACCAGGAGCTAGGCTAGATAGACGGGTT AAATGGGCAGGCTTTCATGTGATTACTGACTCTAGCCAGGCTAGCGAGTTCACGGTGTCTGAACTCATTATGGGGGAACA ATGGCTACCTTCAACTGGAGTAGCCTTTGTTCCTGGATTAGGGAACTAAATAAATGTAACTTGAGCAAAATGATGATATC AATAAAAAAGACTCGTT
CDS sequence (LotjaGi6g1v0219100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACCACCCGGTCCACCCCCACACTCATCTTCTTCTTCTTCTTCCTGGCCCTATGCTATAACCCCTCATATGGTGC TGCACAAACATCAAACTTCATCCACACTGCAAGAACAGTACGTCATGTTCTCAACGATGTCACCAACGTACTACGGGATG AGCTGAGCACCATGGGCAGCGTTGACAACTCTCGGTTGTCCAACGCCATATCGACATGTTTGGAGCTGCTGGATTTGTCA ACAGACGAGATCGGTCGGTGCATGTCAGCATTTGAGGGCTCCGAAGGCAAGCATGAGGGTACTGGAAATTTGAGTTCAGA TTTGAGGACATGGCTGAGTGCTATAGTTGCTGATACACATACATGCATGGAGGGTTTTGAAGGCACCAACAATGGTCGTG TGAAGGATCTGATATCCCCCAAAGTTGACCAAGTGAACTCGCTAGTTCATGAGCTTTTCACCCTTGTGCATCATGTTTCA CATCAGTCCAACAGCCAAGGCCAGGGTGAACTTCCTCCGTGGGTTGATCCTAGGGACTTGCAGTCCAATGTAGATCTTCC TGATGCTATAGTTGCTGCTGATGGGAGTGGAGAGTTCAAAAGCATCATGGATGCAGTGCGTGCAGCTCCAGACTTTAGCA GCAGACGTTATGTCATCTACATAAAAAGAGGAGTTTACAATGAGATAGTTAGCATAGGGAAGAACAAGTGGAACTTGAAA ATGGTAGGAGATGGTATGGATCTCACTGTCATCTCTGGAAGTTTGAGCTACCATCAGAATTTGACCACATACTACACAGC TACCTTGGGTGTCGATGGAAGAGGGTTTATAGCACAGCGCATATCCTTCAGGAACACCGCAGGGCCTGAATATCATCAAG TTGTCGCTTTGAGATCAGCAGCTGATCTTTCGGTCTTTGACGAATGTGAGATTTTCGGTTACGAAGACAGTTTGTATGCT TATTCACAGCGACAGTTCTACAGATATTGCTACATCAGGGGCACGGTGGACTTCATATTTGGACACGCCTCTGCGGTTTT CCAATCCTGCAATTTATTGGTCAAGAAAGGATTGCCAATGCAAAAGAACACTATCACAGCCCAAGATAGAACAAGCTCAA GCCTAGCATCTGCGTTCTCCTTCCAGTTCTGCAAAATATCAGCAGATCTCGACCTTCTACCCTTCGTTGGCTCCATATCG ACATACCTTGGAAGACCATGGAAGCAATATTCTAGAGTTGCTTTCATGCAATCCTACATGAGTGATGTGGTGAGCCCTGA AGGATGGTTGGAGTGGAGTGGTACATTGTATTTAGACACATTGTACTATGCTGAGTACAATAACTATGGACCAGGAGCTA GGCTAGATAGACGGGTTAAATGGGCAGGCTTTCATGTGATTACTGACTCTAGCCAGGCTAGCGAGTTCACGGTGTCTGAA CTCATTATGGGGGAACAATGGCTACCTTCAACTGGAGTAGCCTTTGTTCCTGGATTAGGGAACTAA
Protein sequence (LotjaGi6g1v0219100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTRSTPTLIFFFFFLALCYNPSYGAAQTSNFIHTARTVRHVLNDVTNVLRDELSTMGSVDNSRLSNAISTCLELLDLS TDEIGRCMSAFEGSEGKHEGTGNLSSDLRTWLSAIVADTHTCMEGFEGTNNGRVKDLISPKVDQVNSLVHELFTLVHHVS HQSNSQGQGELPPWVDPRDLQSNVDLPDAIVAADGSGEFKSIMDAVRAAPDFSSRRYVIYIKRGVYNEIVSIGKNKWNLK MVGDGMDLTVISGSLSYHQNLTTYYTATLGVDGRGFIAQRISFRNTAGPEYHQVVALRSAADLSVFDECEIFGYEDSLYA YSQRQFYRYCYIRGTVDFIFGHASAVFQSCNLLVKKGLPMQKNTITAQDRTSSSLASAFSFQFCKISADLDLLPFVGSIS TYLGRPWKQYSRVAFMQSYMSDVVSPEGWLEWSGTLYLDTLYYAEYNNYGPGARLDRRVKWAGFHVITDSSQASEFTVSE LIMGEQWLPSTGVAFVPGLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| CDD | 21 | 157 | 137 | 2.10825E-24 | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Gene3D | 23 | 161 | 139 | 1.2E-5 | ||
| Phobius | 27 | 501 | 475 | - | – | |
| SMART | 29 | 155 | 127 | 1.0E-7 | ||
| SUPERFAMILY | 39 | 158 | 120 | 7.32E-12 | ||
| Pfam | 42 | 152 | 111 | 6.9E-12 | ||
| PANTHER | 61 | 500 | 440 | 1.1E-158 | – | |
| PANTHER | 61 | 500 | 440 | 1.1E-158 | – | |
| Gene3D | 186 | 501 | 316 | 1.3E-119 | ||
| Pfam | 188 | 484 | 297 | 1.3E-125 | ||
| SUPERFAMILY | 188 | 498 | 311 | 1.0E-98 | ||
| ProSitePatterns | 213 | 232 | 20 | - | ||
| ProSitePatterns | 332 | 341 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi6g1v0219100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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