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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0222800 |
| Transcript ID | LotjaGi6g1v0222800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G19150.1 PSI type II chlorophyll a/b-binding protein (Lhca2-1); Swiss-Prot: sp|Q8LCQ4|LHCA6_ARATH Photosystem I chlorophyll a/b-binding protein 6, chloroplastic; TrEMBL-Plants: tr|I3SQC8|I3SQC8_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi6g1v0222800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52758908..52761377) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGCTTGATTTCATTTTGGAGAAGGACAGAACATATCCCAACCAAACATAATGAACTTCACACTGGGCTTTTGGATGA ATTTTTTTGGGCTTAGTTCTGTTAGTGTTATCCCAGCCCAAATCTAGTTTTTTTGGTTCAAAACAAATAAAAATTGATCC TATGCTCTGAAGCTGGCATATCCAAACATGTCAAATTCAAATACTATTGGCCCTTACATTTTTGTTAGCAGAACATGAAT ATCACAAGTTATCCATCATCCAGATATAACAGATAAAGTGATACAGCCTCAGAATATGCTCCTCCTTTCCAACTAACAGT TTCTGCCCTTTCTCTGATTCATGGCTTTATCCATTTCCTCCACTGCATTGTCAACTTTTCCAAACACGTTGTGTTCTCTT TTGGCTCAACCATTAACACTAATTAAATTATGCTCATTCATCTGGTGAATCTTAAAATGAATATTTTGTGTTTGGATGCA GAGAAAAACGTCACAAGGTTTTCCCTGAAAGAACAGCTACATGGTTGCCCAGAAGAATCCATACAAATGCTAAAAAAGGA GTCTCAGATGTATGTGAGCCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCTCCTCCTGAGTGGCTTGATGG CAGGTAATCAGTTTTAAGTTTTCTTGACATTTGTCAAATCATAATGTTCAAGTTTCAACTAGTTTTATGTTTACCACCAA GCACGTTCAAACTTAAACAAATGTCTCGGGTGGTAGAAAGAGTTTTGCTGTCCATAATGGTCCATCGAACTCAAACATGA TTGCCCCGAGGATACATGTAGTTTGAAGTTTTTTTAAATAAAAGTCTAGTTCTGTTTATTTGCTTACTGAAAATCATGCT TATACATTCCTTCATGGTAAATCTATTGTTTTAAGAATCAAGAAATTGAATATACCCCCAGGCACTGGCCTTTGGTTGCA ACCAATTGCAAGAGCTTATCATCAAACACTTTGGCATAATTGTTTAGTTTTCTTCCTATTGCAGTCTTCCTGGTGATTTT GGTTTTGACCCTATTGGATTAGGTATGTGTTACTTTTACTATGCACTTCAAAATGGTTCAGTTCATTGTGTTGTAGTTCA CAAACAAGCTGTTGTTTTTCCTCAGGGTCTGACCCAGAGTTGCTTAAATGGCTTGCTCAGGCAGAGCTAATGCATGCAAG ATGGGCAATGCTTGGAGTGTCTGGGATTCTCATTCCAGAACTGCTTGAAAAAATGGGATATGTTGAGAATTATTCCTGGT ATGAAGCTGGTACTCAAGAGTACTTTGCAGATCCAACAACCTTGTTCATTGTGCAGTTAGCCTTAATGGGCTGGGTGGAG GGTAGAAGATGGGCTGATTTGGTTAACCCAGGGAGTGTTGACATTGAGCCCAAGCTCCCAAATAGGCCCAACCCAAAGCC TGATGTTGGTTACCCAGGTGGGTTGTGGTTTGACCCCATGATGTGGGGAAGAGGGTCACCAGAGCCAGTGATGGTGTTGA GGACCAAGGAGATCAAGAATGGTAGACTTGCAATGCTTGCTTTTGTTGGCTTCTGGTTCCAAGCTATTTATACTGGACAA GGCCCCATTGAAAACTTGATGGCACACCTTGCAGATCCTGGTCACTGCAACATTTTTTCGGTAATGTTTTGTTACTTCAT TCTACTAGCTAGCACTCAATTTAAGACACCACATTGCTTCATCCTACTAGCTATTTGTGCTGTTTCATATAGCAACGGGT ACAACACAGTGAACACACAACAATGTTCACTTAGTGCACGTTTAGGTACACGGTGAAAAATCATGAACAAAAGCAACTTT TCTTAGCTTTTGCGGTTGTTTAGTTTACTGTGGTTTTCCACCGTGTATCGAAACATGACATTAGACAAGTTACTTGGATG ATGAGGATGGTAGTGACAAAAGTTTTTTTCTCATGTGCAGGCTTTCACTTCGAGGTAGTGCTTTGGTTTGGAGAAATGAT ACTACTCCTGCATAAAGAACATGCATAGTGCGGAGCCAGCAGCAAGATCCACTATTTACTTTAAACATCTAATGTTGTTT CCTAATCTGAGGTTTACAGATGACACAACCCACCCAAGGTTTTGATTCTTTCAAACAAAATGGAGACAATATTGTGTTTC TTACTTTCTTTTCTTGTAAATTGTAATCAGGAAAATTTCATCATGTTATATGGATCATTTGGCATTAGATTTTCCAATCC CAAAAAATGTAAAGAAAAGCTTTGTAGTTATAACGTACACAATGCTCTGTTTTTGCATTTAAAGAAGAATCTAAGTTGGG AGCAACCCTTATAGAGATCCTCTAGAACTTTTATCCAAGGGTGAGCTTCTGTCAATCTCCTCAGCATACCACTAATAGTC GGGAAGGGAAGTGTTTTCTCTTCGTTCAACTTGTTAAAAAAAGGCATAGATGATATATGTTTGGAAGGAG
CDS sequence (LotjaGi6g1v0222800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTATCCATTTCCTCCACTGCATTGTCAACTTTTCCAAACACAGAAAAACGTCACAAGGTTTTCCCTGAAAGAAC AGCTACATGGTTGCCCAGAAGAATCCATACAAATGCTAAAAAAGGAGTCTCAGATGTATGTGAGCCACTTCCTCCAGATA GGCCATTGTGGTTCCCTGGTAGTTCTCCTCCTGAGTGGCTTGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTATT GGATTAGGGTCTGACCCAGAGTTGCTTAAATGGCTTGCTCAGGCAGAGCTAATGCATGCAAGATGGGCAATGCTTGGAGT GTCTGGGATTCTCATTCCAGAACTGCTTGAAAAAATGGGATATGTTGAGAATTATTCCTGGTATGAAGCTGGTACTCAAG AGTACTTTGCAGATCCAACAACCTTGTTCATTGTGCAGTTAGCCTTAATGGGCTGGGTGGAGGGTAGAAGATGGGCTGAT TTGGTTAACCCAGGGAGTGTTGACATTGAGCCCAAGCTCCCAAATAGGCCCAACCCAAAGCCTGATGTTGGTTACCCAGG TGGGTTGTGGTTTGACCCCATGATGTGGGGAAGAGGGTCACCAGAGCCAGTGATGGTGTTGAGGACCAAGGAGATCAAGA ATGGTAGACTTGCAATGCTTGCTTTTGTTGGCTTCTGGTTCCAAGCTATTTATACTGGACAAGGCCCCATTGAAAACTTG ATGGCACACCTTGCAGATCCTGGTCACTGCAACATTTTTTCGGCTTTCACTTCGAGGTAG
Protein sequence (LotjaGi6g1v0222800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPI GLGSDPELLKWLAQAELMHARWAMLGVSGILIPELLEKMGYVENYSWYEAGTQEYFADPTTLFIVQLALMGWVEGRRWAD LVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGQGPIENL MAHLADPGHCNIFSAFTSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 256 | 225 | 7.3E-145 | – | |
| PANTHER | 32 | 256 | 225 | 7.3E-145 | ||
| SUPERFAMILY | 53 | 258 | 206 | 3.92E-63 | – | |
| Pfam | 63 | 229 | 167 | 4.6E-53 | ||
| Gene3D | 64 | 249 | 186 | 1.5E-76 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0222800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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