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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0223000 |
| Transcript ID | LotjaGi6g1v0223000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small nuclear ribonucleoprotein LSM1; TAIR: AT1G19120.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q945P8|LSM1A_ARATH Sm-like protein LSM1A; TrEMBL-Plants: tr|A0A072V7I8|A0A072V7I8_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi6g1v0223000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52768264..52769540) extracted from Lotus japonicus Gifu genome v1.2.
TGCTGCACAAGAATTGGCTCAATGTCTTGGGCTTCCCCTGATGATGTCTTACTCTCCACCTCTCTTGCTACATACCTTGA CAGTAATCTCTCTCTCTCTCTCTCTCTTTCTGCTTTTTTTTTTATGTATTTGTTGTTCAATTAATATCATATGTGATGTT TTCTTATGAGAGTAACATGGTCTTGAATTTTAGTGGCTGTAAGTTTTTGTTGGATGAAGAGAAGTTGAGTAAAGGATTGT TTTCAACAAAGAGGAAAATAAAATACTTTATGCATGAGAGCTAATAATAGACATTATATATCAGGAAAGGATGATGAGCT AAGCTAAGTGGCATAGGGGGGGTTGCACAGGTTGTGAGGATTTGGGTCAATAAGGGTAACAGTCCTTGATTCTGTAGGAA TTTCCTAGATGTAAACATTTGGCATGCTGAAAGTATTAAGTGTTTTCATCTTTGGGGGAGATGGTATGTCTAGGGAGAAT AATATCACTTATGCAAAGCTTAATGGATGTTAGTCTTTGATTGAAGTACTAGATTCTATGAATAGTGCTTTAGATCACTG CATCTGGGGTTTAAGTATTTGGCTTTGACCTTGCTACAGTCGTGCGAGAGTGTTGGAATTCAGTCACTGTCCTTTTCTCT GTTCTATAGTTTTCATGCACCTTATCCGGCATTTTTGCTGTGACATGATTTGTTCTTATATATTTAATTTCAGTTAAAGT AGAGATTCAAATAATTGGACTGAATGATGAGATATGACAACATATAGTAAAGGTTTTATTCTGAATTATATATGTTTTTC ACAGAAAAACTTCTTGTCCTGTTGCGAGATGGTCGAAAACTTTTGGGGTTATTACGCTCCTTTGATCAATTTGGTAATTA TCTATCTTACATATATTCTACTTTATGAAGTCCCTGTTATTCTTATAATTATCATCCGCTGTATCTAATACTAACTAGTA ATATGATTCAATTACCATGTACAGCTAACGTTGTTCTTGAAGGTGCATGTGAAAGAGTAATTGTCGGCGATCTTTACTGT GATGTCCCTTTAGGTCTTTATGTGATTCGTGGGGAAAATGTTGTCTTAATCGGAGAGCTGGTATGATGTGTTGTTGATCA TTTCATATAATTTGACTCGAATTAGTTGCTTTCGAGTCTTAATAATTTTGCAATCTTTCTATCAATGAAATAGGACTCGG GAAAGGAGGAGCTTCCGCAGCATATGACTTGTGTGTCAGAGGTGGATATAAGAAAGGTTAGTCCATCAACCAGTTGA
CDS sequence (LotjaGi6g1v0223000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGGGCTTCCCCTGATGATGTCTTACTCTCCACCTCTCTTGCTACATACCTTGACACTAACGTTGTTCTTGAAGG TGCATGTGAAAGAGTAATTGTCGGCGATCTTTACTGTGATGTCCCTTTAGGTCTTTATGTGATTCGTGGGGAAAATGTTG TCTTAATCGGAGAGCTGGACTCGGGAAAGGAGGAGCTTCCGCAGCATATGACTTGTGTGTCAGAGGTGGATATAAGAAAG GTTAGTCCATCAACCAGTTGA
Protein sequence (LotjaGi6g1v0223000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWASPDDVLLSTSLATYLDTNVVLEGACERVIVGDLYCDVPLGLYVIRGENVVLIGELDSGKEELPQHMTCVSEVDIRK VSPSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 15 | 85 | 71 | 2.1E-13 | – | |
| PANTHER | 21 | 81 | 61 | 2.9E-35 | – | |
| PANTHER | 21 | 81 | 61 | 2.9E-35 | – | |
| Pfam | 21 | 57 | 37 | 1.9E-5 | ||
| SUPERFAMILY | 21 | 62 | 42 | 5.95E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0223000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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