Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001163
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 57 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.831s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007429.2
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Vitis vinifera] gi|225454559|ref|XP_002263175.1| chr0 2893784 2897506 -
3 domain predictions
 –
Lj0g3v0068179.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cicer arietinum] gi|502165822|ref|XP_004513701.1| chr0 24375096 24376517 +
3 domain predictions
 –
Lj0g3v0090899.1
n.a. Small nuclear ribonucleoprotein-like protein [Medicago truncatula] gi|357521399|ref|XP_003630988.1| chr0 37579962 37582064 -
3 domain predictions
 –
Lj0g3v0130529.1
n.a. Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1| chr0 59218031 59221156 -
3 domain predictions
 –
Lj0g3v0170419.1
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Vitis vinifera] gi|225454559|ref|XP_002263175.1| chr0 81540420 81543838 -
3 domain predictions
 –
Lj0g3v0204049.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357494377|ref|XP_003617477.1| chr0 101182732 101187465 -
3 domain predictions
 –
Lj0g3v0215509.1
n.a. PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like isoform 1 [Solanum lycopersicum] gi|460368779|ref|XP_004230242.1| chr0 109214308 109215485 -
3 domain predictions
 –
Lj0g3v0230909.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein G-like [Cicer arietinum] gi|502111908|ref|XP_004494202.1| chr0 119694106 119695674 +
2 domain predictions
 –
Lj0g3v0298839.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr0 155313531 155315616 +
3 domain predictions
 –
Lj0g3v0304109.1
n.a. SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula] gi|357511085|ref|XP_003625831.1| chr0 158409208 158411596 -
3 domain predictions
 –
Lj1g3v3977170.4
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357447241|ref|XP_003593896.1| chr1 47212311 47213602 +
2 domain predictions
 –
Lj1g3v4717490.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein G [Glycine max] gi|356505386|ref|XP_003521472.1| chr1 56314597 56317613 -
3 domain predictions
 –
Lj2g3v3133960.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357494377|ref|XP_003617477.1| chr2 40503041 40503694 -
2 domain predictions
 –
Lj3g3v0478010.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| chr3 5458878 5462685 -
3 domain predictions
 –
Lj3g3v2576580.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm1-like isoform X1 [Cicer arietinum] gi|502156536|ref|XP_004510523.1| chr3 31775233 31779312 -
3 domain predictions
 –
Lj3g3v2988250.1
n.a. PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cicer arietinum] gi|502139973|ref|XP_004503997.1| chr3 36978533 36980037 -
3 domain predictions
 –
Lj4g3v0281060.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis sativus] gi|449468622|ref|XP_004152020.1| chr4 3291480 3293319 +
3 domain predictions
 –
Lj4g3v1248000.1
n.a. PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1| chr4 18429622 18430697 -
3 domain predictions
 –
Lj4g3v2573940.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| chr4 34432912 34442316 -
3 domain predictions
 –
Lj4g3v2785700.1
n.a. Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula] gi|357519697|ref|XP_003630137.1| chr4 37248001 37249684 +
3 domain predictions
 –
Lj4g3v3113400.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] gi|449457536|ref|XP_004146504.1| chr4 41686383 41689800 -
3 domain predictions
 –
Lj5g3v0292810.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr5 2603352 2604954 +
3 domain predictions
 –
Lj5g3v0292810.2
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr5 2603352 2604630 +
3 domain predictions
 –
Lj5g3v0626530.1
n.a. PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1| chr5 8372113 8376371 -
3 domain predictions
 –
Lj5g3v0975430.1
n.a. Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1| chr5 14952840 14955236 +
3 domain predictions
 –
Lj5g3v1533380.1
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit-like [Cicer arietinum] gi|502163687|ref|XP_004512917.1| chr5 22447143 22450877 +
3 domain predictions
 –
Lj5g3v1631030.1
n.a. PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like [Cicer arietinum] gi|502112559|ref|XP_004494370.1| chr5 23647359 23649957 -
3 domain predictions
 –
Lj6g3v1946380.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357447241|ref|XP_003593896.1| chr6 22195786 22197459 -
2 domain predictions
 –
LotjaGi1g1v0035700_LC.1
n.a. Small nuclear ribonucleoprotein-associated protein; TAIR: AT4G20440.1 small nuclear ribonucleoprotein associated protein B; Swiss-Prot: sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B'; TrEMBL-Plants: tr|G7K3F8|G7K3F8_MEDTR Small nuclear ribonucleoprotein-associated protein; Found in the gene: LotjaGi1g1v0035700_LC LjG1.1_chr1 4938798 4967106 +
3 domain predictions
 –
LotjaGi1g1v0035700_LC.2
n.a. Small nuclear ribonucleoprotein-associated protein; TAIR: AT4G20440.1 small nuclear ribonucleoprotein associated protein B; Swiss-Prot: sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B'; TrEMBL-Plants: tr|G7K3F8|G7K3F8_MEDTR Small nuclear ribonucleoprotein-associated protein; Found in the gene: LotjaGi1g1v0035700_LC LjG1.1_chr1 4938959 4939798 +
3 domain predictions
 –
LotjaGi1g1v0598200.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|A0A0J8FV31|A0A0J8FV31_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598200 LjG1.1_chr1 113801273 113802775 -
3 domain predictions
 –
LotjaGi1g1v0728800.1
n.a. Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 LjG1.1_chr1 130040223 130043950 -
3 domain predictions
 –
LotjaGi1g1v0728800.2
n.a. Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 LjG1.1_chr1 130040967 130043683 -
3 domain predictions
 –
LotjaGi1g1v0730200.1
n.a. U6 snRNA-associated Sm-like protein; TAIR: AT1G03330.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q1H595|LSM2_ARATH Sm-like protein LSM2; TrEMBL-Plants: tr|G7KQV7|G7KQV7_MEDTR U6 snRNA-associated-like-Smprotein; Found in the gene: LotjaGi1g1v0730200 LjG1.1_chr1 130193816 130196056 -
3 domain predictions
 –
LotjaGi1g1v0765900.1
n.a. Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765900 LjG1.1_chr1 133898031 133901120 -
3 domain predictions
 –
LotjaGi2g1v0132800.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|Q5N9F1|Q5N9F1_ORYSJ protein; Found in the gene: LotjaGi2g1v0132800 LjG1.1_chr2 48142743 48144887 +
3 domain predictions
 –
LotjaGi3g1v0058700.1
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170492 6174863 -
3 domain predictions
 –
LotjaGi3g1v0058700.2
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170492 6182588 -
3 domain predictions
 –
LotjaGi3g1v0058700.3
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170653 6174840 -
3 domain predictions
 –
LotjaGi3g1v0058700.4
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170993 6174689 -
3 domain predictions
 –
LotjaGi3g1v0253500.1
n.a. U6 snRNA-associated Sm-like protein; TAIR: AT2G43810.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|O22823|LSM6B_ARATH Sm-like protein LSM36B; TrEMBL-Plants: tr|I3SM22|I3SM22_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0253500 LjG1.1_chr3 42752935 42754574 +
3 domain predictions
 –
LotjaGi3g1v0412300.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT3G14080.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q8LFL8|LSM1B_ARATH Sm-like protein LSM1B; TrEMBL-Plants: tr|A0A0B2P1D2|A0A0B2P1D2_GLYSO U6 snRNA-associated Sm-like protein LSm1; Found in the gene: LotjaGi3g1v0412300 LjG1.1_chr3 81651156 81655809 -
3 domain predictions
 –
LotjaGi3g1v0474900.1
n.a. Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3SGN2|I3SGN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474900 LjG1.1_chr3 89156434 89159563 -
3 domain predictions
 –
LotjaGi4g1v0025100.1
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT5G48870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9FKB0|LSM5_ARATH Sm-like protein LSM5; TrEMBL-Plants: tr|A0A0A0L923|A0A0A0L923_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0025100 LjG1.1_chr4 3079597 3081071 +
3 domain predictions
 –
LotjaGi4g1v0301200.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT4G30220.1 small nuclear ribonucleoprotein F; Swiss-Prot: sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F; TrEMBL-Plants: tr|I3SY08|I3SY08_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0301200 LjG1.1_chr4 67547865 67549762 +
3 domain predictions
 –
LotjaGi4g1v0349000.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 LjG1.1_chr4 72775745 72779925 +
3 domain predictions
 –
LotjaGi4g1v0349000.2
n.a. Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 LjG1.1_chr4 72775826 72778266 +
3 domain predictions
 –
LotjaGi4g1v0405100.1
n.a. Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3T1G1|I3T1G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0405100 LjG1.1_chr4 78160722 78163021 -
3 domain predictions
 –
LotjaGi4g1v0458800.1
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 LjG1.1_chr4 82972665 82976589 -
3 domain predictions
 –
LotjaGi4g1v0458800.2
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 LjG1.1_chr4 82973389 82974371 -
3 domain predictions
 –