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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001163
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 57 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.416s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007429.2
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Vitis vinifera] gi|225454559|ref|XP_002263175.1| chr0 2893784 2897506 -
3 domain predictions
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Lj0g3v0068179.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cicer arietinum] gi|502165822|ref|XP_004513701.1| chr0 24375096 24376517 +
3 domain predictions
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Lj0g3v0090899.1
n.a. Small nuclear ribonucleoprotein-like protein [Medicago truncatula] gi|357521399|ref|XP_003630988.1| chr0 37579962 37582064 -
3 domain predictions
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Lj0g3v0130529.1
n.a. Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1| chr0 59218031 59221156 -
3 domain predictions
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Lj0g3v0170419.1
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit [Vitis vinifera] gi|225454559|ref|XP_002263175.1| chr0 81540420 81543838 -
3 domain predictions
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Lj0g3v0204049.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357494377|ref|XP_003617477.1| chr0 101182732 101187465 -
3 domain predictions
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Lj0g3v0215509.1
n.a. PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like isoform 1 [Solanum lycopersicum] gi|460368779|ref|XP_004230242.1| chr0 109214308 109215485 -
3 domain predictions
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Lj0g3v0230909.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein G-like [Cicer arietinum] gi|502111908|ref|XP_004494202.1| chr0 119694106 119695674 +
2 domain predictions
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Lj0g3v0298839.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr0 155313531 155315616 +
3 domain predictions
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Lj0g3v0304109.1
n.a. SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula] gi|357511085|ref|XP_003625831.1| chr0 158409208 158411596 -
3 domain predictions
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Lj1g3v3977170.4
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357447241|ref|XP_003593896.1| chr1 47212311 47213602 +
2 domain predictions
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Lj1g3v4717490.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein G [Glycine max] gi|356505386|ref|XP_003521472.1| chr1 56314597 56317613 -
3 domain predictions
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Lj2g3v3133960.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357494377|ref|XP_003617477.1| chr2 40503041 40503694 -
2 domain predictions
 –
Lj3g3v0478010.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| chr3 5458878 5462685 -
3 domain predictions
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Lj3g3v2576580.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm1-like isoform X1 [Cicer arietinum] gi|502156536|ref|XP_004510523.1| chr3 31775233 31779312 -
3 domain predictions
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Lj3g3v2988250.1
n.a. PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cicer arietinum] gi|502139973|ref|XP_004503997.1| chr3 36978533 36980037 -
3 domain predictions
 –
Lj4g3v0281060.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis sativus] gi|449468622|ref|XP_004152020.1| chr4 3291480 3293319 +
3 domain predictions
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Lj4g3v1248000.1
n.a. PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1| chr4 18429622 18430697 -
3 domain predictions
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Lj4g3v2573940.1
n.a. PREDICTED: U6 snRNA-associated Sm-like protein LSm7-like [Glycine max] gi|356512406|ref|XP_003524910.1| chr4 34432912 34442316 -
3 domain predictions
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Lj4g3v2785700.1
n.a. Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula] gi|357519697|ref|XP_003630137.1| chr4 37248001 37249684 +
3 domain predictions
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Lj4g3v3113400.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] gi|449457536|ref|XP_004146504.1| chr4 41686383 41689800 -
3 domain predictions
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Lj5g3v0292810.1
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr5 2603352 2604954 +
3 domain predictions
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Lj5g3v0292810.2
n.a. PREDICTED: probable small nuclear ribonucleoprotein F [Glycine max] gi|356562363|ref|XP_003549441.1| chr5 2603352 2604630 +
3 domain predictions
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Lj5g3v0626530.1
n.a. PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max] gi|356508935|ref|XP_003523208.1| chr5 8372113 8376371 -
3 domain predictions
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Lj5g3v0975430.1
n.a. Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula] gi|357440765|ref|XP_003590660.1| chr5 14952840 14955236 +
3 domain predictions
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Lj5g3v1533380.1
n.a. PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit-like [Cicer arietinum] gi|502163687|ref|XP_004512917.1| chr5 22447143 22450877 +
3 domain predictions
 –
Lj5g3v1631030.1
n.a. PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like [Cicer arietinum] gi|502112559|ref|XP_004494370.1| chr5 23647359 23649957 -
3 domain predictions
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Lj6g3v1946380.1
n.a. Small nuclear ribonucleoprotein-associated protein B [Medicago truncatula] gi|357447241|ref|XP_003593896.1| chr6 22195786 22197459 -
2 domain predictions
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LotjaGi1g1v0035700_LC.1
n.a. Small nuclear ribonucleoprotein-associated protein; TAIR: AT4G20440.1 small nuclear ribonucleoprotein associated protein B; Swiss-Prot: sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B'; TrEMBL-Plants: tr|G7K3F8|G7K3F8_MEDTR Small nuclear ribonucleoprotein-associated protein; Found in the gene: LotjaGi1g1v0035700_LC LjG1.1_chr1 4938798 4967106 +
3 domain predictions
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LotjaGi1g1v0035700_LC.2
n.a. Small nuclear ribonucleoprotein-associated protein; TAIR: AT4G20440.1 small nuclear ribonucleoprotein associated protein B; Swiss-Prot: sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B'; TrEMBL-Plants: tr|G7K3F8|G7K3F8_MEDTR Small nuclear ribonucleoprotein-associated protein; Found in the gene: LotjaGi1g1v0035700_LC LjG1.1_chr1 4938959 4939798 +
3 domain predictions
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LotjaGi1g1v0598200.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|A0A0J8FV31|A0A0J8FV31_BETVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0598200 LjG1.1_chr1 113801273 113802775 -
3 domain predictions
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LotjaGi1g1v0728800.1
n.a. Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 LjG1.1_chr1 130040223 130043950 -
3 domain predictions
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LotjaGi1g1v0728800.2
n.a. Small nuclear ribonucleoprotein Sm D1; TAIR: AT4G02840.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1; TrEMBL-Plants: tr|I3SRU7|I3SRU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0728800 LjG1.1_chr1 130040967 130043683 -
3 domain predictions
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LotjaGi1g1v0730200.1
n.a. U6 snRNA-associated Sm-like protein; TAIR: AT1G03330.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q1H595|LSM2_ARATH Sm-like protein LSM2; TrEMBL-Plants: tr|G7KQV7|G7KQV7_MEDTR U6 snRNA-associated-like-Smprotein; Found in the gene: LotjaGi1g1v0730200 LjG1.1_chr1 130193816 130196056 -
3 domain predictions
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LotjaGi1g1v0765900.1
n.a. Small nuclear ribonucleoprotein SM D3, putative; TAIR: AT5G27720.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4; TrEMBL-Plants: tr|A0A1J7ICX8|A0A1J7ICX8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765900 LjG1.1_chr1 133898031 133901120 -
3 domain predictions
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LotjaGi2g1v0132800.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT1G76860.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B; TrEMBL-Plants: tr|Q5N9F1|Q5N9F1_ORYSJ protein; Found in the gene: LotjaGi2g1v0132800 LjG1.1_chr2 48142743 48144887 +
3 domain predictions
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LotjaGi3g1v0058700.1
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170492 6174863 -
3 domain predictions
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LotjaGi3g1v0058700.2
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170492 6182588 -
3 domain predictions
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LotjaGi3g1v0058700.3
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170653 6174840 -
3 domain predictions
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LotjaGi3g1v0058700.4
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G03870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9SI54|LSM7_ARATH Sm-like protein LSM7; TrEMBL-Plants: tr|I3SC15|I3SC15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0058700 LjG1.1_chr3 6170993 6174689 -
3 domain predictions
 –
LotjaGi3g1v0253500.1
n.a. U6 snRNA-associated Sm-like protein; TAIR: AT2G43810.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|O22823|LSM6B_ARATH Sm-like protein LSM36B; TrEMBL-Plants: tr|I3SM22|I3SM22_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0253500 LjG1.1_chr3 42752935 42754574 +
3 domain predictions
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LotjaGi3g1v0412300.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT3G14080.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q8LFL8|LSM1B_ARATH Sm-like protein LSM1B; TrEMBL-Plants: tr|A0A0B2P1D2|A0A0B2P1D2_GLYSO U6 snRNA-associated Sm-like protein LSm1; Found in the gene: LotjaGi3g1v0412300 LjG1.1_chr3 81651156 81655809 -
3 domain predictions
 –
LotjaGi3g1v0474900.1
n.a. Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3SGN2|I3SGN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0474900 LjG1.1_chr3 89156434 89159563 -
3 domain predictions
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LotjaGi4g1v0025100.1
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT5G48870.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9FKB0|LSM5_ARATH Sm-like protein LSM5; TrEMBL-Plants: tr|A0A0A0L923|A0A0A0L923_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0025100 LjG1.1_chr4 3079597 3081071 +
3 domain predictions
 –
LotjaGi4g1v0301200.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT4G30220.1 small nuclear ribonucleoprotein F; Swiss-Prot: sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F; TrEMBL-Plants: tr|I3SY08|I3SY08_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0301200 LjG1.1_chr4 67547865 67549762 +
3 domain predictions
 –
LotjaGi4g1v0349000.1
n.a. Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 LjG1.1_chr4 72775745 72779925 +
3 domain predictions
 –
LotjaGi4g1v0349000.2
n.a. Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000 LjG1.1_chr4 72775826 72778266 +
3 domain predictions
 –
LotjaGi4g1v0405100.1
n.a. Small nuclear ribonucleoprotein Sm D3; TAIR: AT1G20580.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b; TrEMBL-Plants: tr|I3T1G1|I3T1G1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0405100 LjG1.1_chr4 78160722 78163021 -
3 domain predictions
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LotjaGi4g1v0458800.1
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 LjG1.1_chr4 82972665 82976589 -
3 domain predictions
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LotjaGi4g1v0458800.2
n.a. Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800 LjG1.1_chr4 82973389 82974371 -
3 domain predictions
 –