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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0224600 |
| Transcript ID | LotjaGi6g1v0224600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G06000.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000; TrEMBL-Plants: tr|A0A0R0KCB7|A0A0R0KCB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0224600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52960817..52965268) extracted from Lotus japonicus Gifu genome v1.2.
ACATCTATGTCTGTGTCACACTCACAGGTGATACTGCTAAAACCCTAGAAACTGAGCAAGCAAGCAGTTAGAACTCACTT CAGGATCCATTTCGTGTAGAAAAAACGCAGTCATTCCTCTCATTCTCCACTATCTTCACTGATTTCGATCTCTCCACTCA TTCATCTCCGTAAGATGCTCCTCGACCTTCATGCACTCGTTCACCTCCATGGAGAACAACAACAACCGTGACCGCCGCAC GTGCTCCAATCAGCGAAGGTCACGTGACCGATGGTGCCAACCACATGACCGTCGCCTTCATCACCACCCTCTGTTCAAGC GCTCCACCCTCCGATGCCGCCGGCACCATCCGCGACGGCGCCGACCACCACATGGGTTCCATCAGAAGGCCTGAAGCCTG GTTCGTCAAGATCGTTTGCACCGTTTTCGCTCGCTCCAGCTCCCTTGATCGTTTCGTAGGCTATTTCAGTAAGCATCTAA CCCCTTCTATAGTCTCTGAGGTTGTTCATAGATTCACCATTGTTCCTGCATTGGGATTCAAGGTTGTTGAATTCACTAAG GATAAGTTGAAAATGAAGCATTCTAGTTGGACTTACAATTTTCTGTTGCGGTCGCTTTGCGAATCGGATCTCCATGGTTC TGCGAAATTGGTGTATGATTGGATGAAATTTGATGGGCAGTTTCCTGATAGTTACCTATTGGGGTTTTTGGTTTCCTCGT ATGCACAAGCTGGCAGGTTCGATATTTCGAAGGAATTGCTTGCTGATTCTCAGTGCAATTATGTTGGAGTCAATGATAGT TTGTACCATCATTTGTTTGACATTTTGATAAGGCAGAATAAAGTGGGTGATGCTGTTGTTCTGTTTAGGGAGCTTGTCAT GTCGCGGTATTGTCCGAAGATCCATACGGTCAATCTTTTGATGCGGGGTTTGTGCAGGGCTGGGGTAATTAATGAGGCCT TTAAGCTTCTCGGTGATTTAAGGAGTTTTGGTTGTTTACCTAATATAATTACGTATAACACTCTTATTCACGGTTTGTGC CAAATTAGTGAGGTTTGTAGAGCTAGGAGCTTAATGAAGGAAGTTTGGTTGAAAGGGGAGTTGGCCCCTGATGTTTATAG TTATACAACGATAATATCAGGTTATTGCAAGTTGGGTGAGACGGGGGAGGGGGTTAAGCTTTTCGATGAAATGACTAGGT CTGGAATTAGACCTAATAGGTGTACTTTTAATGCTCTTATTGATGGCTTTGTCAAGTCGGGTAAAATGGATTCCGCGCTA GCCATGTATGCAAAGATGTCTGTTGAGGGTTGTCCTCCTGATGTTGTCACTTTCACTTCCCTAATTTATGGCTATTTTGG AGTTGGACAGGTGAAACGCGCCTTGGAAATATGGCGTAAAATGAATGATAGACATGTTTCTGCAAATATATATACATTCT CTGCTCTTGTCAGTGGTCTTTGCAAGATGAACAGACTGCACGAAGCTCGTAACATTTTGAGACTAATGAATCAGAGTGGC ATTGTTCCGAAGCCGTTTGTCTACAATCATGTTATTGATGTATATTGTAAATCAGGGAATGTAGATGAGGCTAATAGAAT TGTAGCTGAAATGGAGGAGAAGAGGTGTAAACCTGATAAGGTGACATATACCAGTCTTATTATTGGGCATTGTACGAAAG GGAGGATGCTTGAAGCAATTGGTATCTTTGATAGGATGTTGGTGGTTGGTTGCACCCCGGATGAAATCACTGTAAATGAC TTGACATCACGTCTTTTGAAAGCTGGAATGCCTAGTGAAGCTGCCCGCATTAAGAAAGCTCTATGGCAGAACCATACATT GGGTACTTCATTGAAGAAGAAATCTTATCATCAAAGTACTAATGCAGATATGCCCATTGCTGTTTATTAAAGTTCTGTTG CAAACCAGTGGTTAGACATTGCCTTCCACCATTTTGACTTGGGTGCTGGATCCATGTTTCCAGCTTGTAAAACAAAGGAA ACTATCATCAGCAGAGGGTCTCTTTTTTGTGGAGACTATCAACATTTAAGTTTGCATTGCCATTTGCTCCAACATTCTGC TGATTGTTTCTGAACCTGAAGTTAGGTATATTCTCCTCTAGTTAATCTTCTTGAGCAGATTTTTCATTATTCTACTGAAA TTAAAATTTGTTTCTTTTACAATCTAGTGTTAGTAATTTGATTTTCTTACTCATTTAAAAATGTATTTACTCAAGAGTAT ACTGAATTCTACATGATAGGAATTGGAAAGAAAAATGAAATGTTTGATTGATTTTTGGAAATTTTATGGAAAATAAGCTA TGTCTTAAGAAGATAGAAAGATTATTAGTGAAGATTTGCAGAGGAAAAAACATTTGAAAAGGGACCAGAAGGAAATTCCA ATGTTTTAGGGCTCATAAGTTGGTAGAATACATGATGGCAGATGGATTTCTCATGGAAGTCTTTAACATTTCCATAGATT CTGTAGGAAGATTTAGGTCAAAATGCAAGGAGCCGTCTTTAACTAGAGGTCAATTGCGGAAACCCCCTTAGTTTAAAATT CAGCAACTCCTTAAACTTCACAAACAGTGCATATTTACTCCTTAATCACAGTTTGCTGCACATTCATGTGGGTTGGTAAG CTCAGGTAGTTAAGTTGCTTAGTTTTGAACCATAGGGGAGTTTTCTGAAACCTAAATAGTTTGAAGGGGTTTATATCCAT TTCTGTGAAGATTTACCATCTATTTGGTGAATTATCTTTTTCTTTGGTATACTTTGTCAAAATTTGTAATTGTTTTATCA GCATCTGCTCCACTCCTTTTTCTTTAGAGACTGGAGTAACCACTTATACAAATACCAAGAAACAAACTTTTCTTGAATTT TCTCTTTCTCTCTTGAAATAAGATTATATTGTATGCCTTAGAAATCATTTTCTGTTTGGACTTAAGGCGAAGGGAAATGT ATATTTGAACTCATTTCATTTTGTTTATCACTTTAAGAGAGAGCATACAGCGATATTCTAAGAATTCTCAGAATGTTTAC TTCCTTAAAATCGAGAACATGACTCTTCTTCCTTTTCCCATTCAAAATTGTGCACGGTAAGATCCTTGGAATGAAGCATA CAGGGGCCAGGATATTATCGGACATTTGTGCCTATGCAAGAAATTCAAATTATTTCCTTAGGTTTGAACTAAGAAGAAAT GCTATTCACACTCACTTTGACACTCTCTTTACTCCTTGAACTTCACAAACTGTGTATTTAGTGGGACTAACATGGATTTC AACCACTAAATGAGAGTGTTGAAAAGTGAGTGTTGCAAGCCCTCTTATTGAAATTAATAACTCATGTTCTATGTAGTTTG ACTCCTCTAAACTGAGAGATACACTTGAGATGGTAAAGTGTGAGTTATGAATTAAAATAGGTTGATAGTAATAAAATACA CGTTCATGTATAATAGTAAAATATGAAGTTGTTAAAATCCCAACAATTGATTTGTCAATCAACTCACGTTAGATAGGCTA AATCCATTCTATGCATGTGCACCTGGAGTTATGGTGAGCTATACAGGTGCACCTGAAGTACAAATTAATTTTTCTGGCAA CATGGAGGAAGAACTTTCTCAAATTTTCGGTTTTAAACCCCAAATCATATTGACACACTATAAGAAAATAAGTTCAAATT TTCTCTAGTTTAATGTTAATCAAGTTCATAGCTTCATTACAGATCCTGGGTAATCTACGAATCTAACAGAAGGCCATCAA AATTTGATGTTACTTATATGTAGAATTGGCTATTTATTTTGGCAGGTCTAGCTTGGGTGAGTTACAACAAACTCCCATAT CCAAATCCTATGGGGGAAGAGATGCTGTAAATCACTGAAGTCTTGATTTTATGGCATTGCAGGTTCAGAGACAATACATA TCTTAGGTTTATGCAGCACTTGGAGAGCCCCAAGTTTTATGCTTCACCAATCCTCCGACCTCAGATATATGACACACATG TGGATGAGTCAGTGAGTATATCAGGTTGAACGAGATTTCATGCCAAAACTTTGGGTTCAAATATGGGTTGAATAAGGTTT TCTTTTACTCTTTTTCGGCTCACATAACAGTAATGTTATCAGATGTTACAAAGGGTGAGGTGTGATCACAAGGAGTTTTG ACCATGTGATCAAATTGTTGATTCTTTTTAGACTGTATAAAATAAGAAAAGCAGAGACTCACAGAACAGTTTCCTGCACA AGAGAAGAGGAAAGAATGTAAAGTCTCGTTGTAGTTGAATGCTAGTCTTGCTGGTTAATTTTGTTAAATTTAATTTATTT AGCCATTTAGTTTACACCTTTCACAAGATTATCTTTTGTGGAGTAATTTTACACCTTTTGATAGCAGTTTTTGAATAAAA TCTTCTGTCTCATTGTTCTATTGCTAATGTGTGATTAACTGCAACACTTCTA
CDS sequence (LotjaGi6g1v0224600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGTCGCCTTCATCACCACCCTCTGTTCAAGCGCTCCACCCTCCGATGCCGCCGGCACCATCCGCGACGGCGCCGA CCACCACATGGGTTCCATCAGAAGGCCTGAAGCCTGGTTCGTCAAGATCGTTTGCACCGTTTTCGCTCGCTCCAGCTCCC TTGATCGTTTCGTAGGCTATTTCAGTAAGCATCTAACCCCTTCTATAGTCTCTGAGGTTGTTCATAGATTCACCATTGTT CCTGCATTGGGATTCAAGGTTGTTGAATTCACTAAGGATAAGTTGAAAATGAAGCATTCTAGTTGGACTTACAATTTTCT GTTGCGGTCGCTTTGCGAATCGGATCTCCATGGTTCTGCGAAATTGGTGTATGATTGGATGAAATTTGATGGGCAGTTTC CTGATAGTTACCTATTGGGGTTTTTGGTTTCCTCGTATGCACAAGCTGGCAGGTTCGATATTTCGAAGGAATTGCTTGCT GATTCTCAGTGCAATTATGTTGGAGTCAATGATAGTTTGTACCATCATTTGTTTGACATTTTGATAAGGCAGAATAAAGT GGGTGATGCTGTTGTTCTGTTTAGGGAGCTTGTCATGTCGCGGTATTGTCCGAAGATCCATACGGTCAATCTTTTGATGC GGGGTTTGTGCAGGGCTGGGGTAATTAATGAGGCCTTTAAGCTTCTCGGTGATTTAAGGAGTTTTGGTTGTTTACCTAAT ATAATTACGTATAACACTCTTATTCACGGTTTGTGCCAAATTAGTGAGGTTTGTAGAGCTAGGAGCTTAATGAAGGAAGT TTGGTTGAAAGGGGAGTTGGCCCCTGATGTTTATAGTTATACAACGATAATATCAGGTTATTGCAAGTTGGGTGAGACGG GGGAGGGGGTTAAGCTTTTCGATGAAATGACTAGGTCTGGAATTAGACCTAATAGGTGTACTTTTAATGCTCTTATTGAT GGCTTTGTCAAGTCGGGTAAAATGGATTCCGCGCTAGCCATGTATGCAAAGATGTCTGTTGAGGGTTGTCCTCCTGATGT TGTCACTTTCACTTCCCTAATTTATGGCTATTTTGGAGTTGGACAGGTGAAACGCGCCTTGGAAATATGGCGTAAAATGA ATGATAGACATGTTTCTGCAAATATATATACATTCTCTGCTCTTGTCAGTGGTCTTTGCAAGATGAACAGACTGCACGAA GCTCGTAACATTTTGAGACTAATGAATCAGAGTGGCATTGTTCCGAAGCCGTTTGTCTACAATCATGTTATTGATGTATA TTGTAAATCAGGGAATGTAGATGAGGCTAATAGAATTGTAGCTGAAATGGAGGAGAAGAGGTGTAAACCTGATAAGGTGA CATATACCAGTCTTATTATTGGGCATTGTACGAAAGGGAGGATGCTTGAAGCAATTGGTATCTTTGATAGGATGTTGGTG GTTGGTTGCACCCCGGATGAAATCACTGTAAATGACTTGACATCACGTCTTTTGAAAGCTGGAATGCCTAGTGAAGCTGC CCGCATTAAGAAAGCTCTATGGCAGAACCATACATTGGGTACTTCATTGAAGAAGAAATCTTATCATCAAAGTACTAATG CAGATATGCCCATTGCTGTTTATTAA
Protein sequence (LotjaGi6g1v0224600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVAFITTLCSSAPPSDAAGTIRDGADHHMGSIRRPEAWFVKIVCTVFARSSSLDRFVGYFSKHLTPSIVSEVVHRFTIV PALGFKVVEFTKDKLKMKHSSWTYNFLLRSLCESDLHGSAKLVYDWMKFDGQFPDSYLLGFLVSSYAQAGRFDISKELLA DSQCNYVGVNDSLYHHLFDILIRQNKVGDAVVLFRELVMSRYCPKIHTVNLLMRGLCRAGVINEAFKLLGDLRSFGCLPN IITYNTLIHGLCQISEVCRARSLMKEVWLKGELAPDVYSYTTIISGYCKLGETGEGVKLFDEMTRSGIRPNRCTFNALID GFVKSGKMDSALAMYAKMSVEGCPPDVVTFTSLIYGYFGVGQVKRALEIWRKMNDRHVSANIYTFSALVSGLCKMNRLHE ARNILRLMNQSGIVPKPFVYNHVIDVYCKSGNVDEANRIVAEMEEKRCKPDKVTYTSLIIGHCTKGRMLEAIGIFDRMLV VGCTPDEITVNDLTSRLLKAGMPSEAARIKKALWQNHTLGTSLKKKSYHQSTNADMPIAVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 541 | 523 | - | – | |
| PANTHER | 47 | 267 | 221 | 1.8E-108 | – | |
| Gene3D | 69 | 166 | 98 | 5.1E-6 | ||
| ProSiteProfiles | 100 | 134 | 35 | 8.901 | ||
| ProSiteProfiles | 135 | 165 | 31 | 5.864 | ||
| Gene3D | 167 | 268 | 102 | 3.6E-21 | ||
| ProSiteProfiles | 170 | 204 | 35 | 7.629 | ||
| Pfam | 204 | 253 | 50 | 1.2E-13 | ||
| ProSiteProfiles | 205 | 239 | 35 | 10.687 | ||
| TIGRFAM | 208 | 241 | 34 | 2.9E-7 | ||
| ProSiteProfiles | 240 | 274 | 35 | 8.627 | ||
| Gene3D | 269 | 340 | 72 | 3.2E-22 | ||
| PANTHER | 271 | 373 | 103 | 1.8E-108 | – | |
| Pfam | 275 | 321 | 47 | 7.4E-15 | ||
| ProSiteProfiles | 276 | 310 | 35 | 14.052 | ||
| TIGRFAM | 278 | 311 | 34 | 1.2E-10 | ||
| PANTHER | 307 | 518 | 212 | 1.8E-108 | – | |
| ProSiteProfiles | 311 | 345 | 35 | 12.31 | ||
| TIGRFAM | 313 | 347 | 35 | 1.0E-9 | ||
| Gene3D | 341 | 416 | 76 | 2.9E-21 | ||
| Pfam | 345 | 394 | 50 | 4.3E-13 | ||
| ProSiteProfiles | 346 | 380 | 35 | 10.348 | ||
| TIGRFAM | 348 | 381 | 34 | 5.5E-5 | ||
| ProSiteProfiles | 381 | 415 | 35 | 12.211 | ||
| TIGRFAM | 383 | 415 | 33 | 1.9E-6 | ||
| ProSiteProfiles | 416 | 450 | 35 | 12.474 | ||
| Gene3D | 417 | 517 | 101 | 8.2E-23 | ||
| Pfam | 418 | 463 | 46 | 8.5E-15 | ||
| TIGRFAM | 419 | 451 | 33 | 1.7E-9 | ||
| ProSiteProfiles | 451 | 485 | 35 | 11.641 | ||
| TIGRFAM | 453 | 487 | 35 | 1.5E-7 | ||
| ProSiteProfiles | 486 | 516 | 31 | 5.766 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0224600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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