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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0225700 |
| Transcript ID | LotjaGi6g1v0225700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Growth-regulating factor-like protein; TAIR: AT3G13960.1 growth-regulating factor 5; Swiss-Prot: sp|Q8L8A6|GRF5_ARATH Growth-regulating factor 5; TrEMBL-Plants: tr|V7B1C9|V7B1C9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0225700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53152491..53155272) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCCTCTTTTGTTTTTTTCTTCCTCTCACTCCCCCTTTAGTTTATAGATTTCTGTAGATATGTCAGAGACAAGAGCTG CCAGAGGGACAGGTTAGCTGCAGAAGCAGTAACAACAGCAGAAAGAGAGAGAGAAAGTGCATCAACAAGCATGCAGCTAG CTATGTAATCAGAACCATTAGTTTTATTCATGTACTGCAGATTCTGTAACCCAATGGTTCCTGAATTAAATATACCTACT CTACCTCCTCCTCCCAACTTCTTTTGTATTAATATACTCTAATACAATAACCCCACTCACTCTCTGCTCATTCATAATCT CTGTGTCTTCTGTTTCACTGCATCTGAAATAGCTAGCTTCTGTTCTGTTTTCACTTGCTGCTTGATAATGAATGGAAGGA ACAGGTTCCCTTTTACTCCGTCACAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTAAC TCCATCCCACCTGATCTTCTCTTCACTATTAGAAGAAGCTACTTGGATTCTCCTTTGCCTTCAAGGCTTATGCCTAACCA ATCACAACACTGTAAGTCCTTTTTCTCTCCCTCTCTTACTCAGTTACTCTGGAAAAATGTTTTGTTTACACTTAGAAATT TACCTCCACCTTTTGAAGTAAGGAATAGAAGAGGGAAATGAGAGATATGATAGATGATAAGATAAGAATATAAAAGAGAA AAGTTTGAATGAATCAAAACCTTACTATGTGTCACTGTGTGGAATTTGGATTCTCTATAGTTAAATAATTCCTAAATTCA TGTAGTCATAGTCATAGAATCCAATCCATTCCATTAAGATTGAAAGGTTCAAACCTTAAAGTTAATATGTGACGACCGAT TTTGATGAAATATATAAGCCGACCTATCTCAACCGACCTATCTTGATTAAACAGTGCAGATTTCTTAACTTTGTGAATGT AGAATTGCCCTGACTGCTATGCAAGTTCTCTTTGACTAAAAGAATTTGGGTGTGACTGTTTGCAGTTGGATGGAACTACC TGCAAATGGGGTTAGGAAGAAAAATAGACCCAGAGCCAGGTAGGTGCAGAAGAACAGATGGAAAGAAATGGAGATGCTCA AAAGATGCATACCCAGATTCCAAGTACTGTGAGAGGCACATGCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGT TTTGAAAACATCAACAACAACAAATGCAACACCAGTAGCATTCTCATCAATCACAAGAAATAGCCCAGCACTAACCCCAA CTAATAATTCTCTTTCACCACTTTCATCTTCTTGTGTGTCCTCTGAGACAAACCATCACCAATCTCAACATTCTGGCTTC TATGGTTCTCATCTTCAGCACTCGTTTCTCTATGATCACCCTTCATCAAGGCCTTCTGGTATTGGTTTCTCATTTGAAGA CAACAATAGCAGTGCTTCTTTGTTTCAGGACACTGGCTCTTATTCTCAGACTAATGACAACTGCAGGTTTTTCTGAAAAC CAAGCTTGTTCATAGTGTTTTGAAATTTGAAGTACTTTATGTGATTTTTTTAATAAACCACCGGGTATCCGATCACCCTT CGGATGACGTGTGACTATTTCGGATTTGAAATTTAGTTATAGTTAAGACTTTTCATCCTTTCTCAGGCGTATTGTGCGGG GATCACACACTCTGCCTGAGTTGTCAATTGAGTAACCACTAGTGTGTTAGTTTCTGTGATTGATTCTCTGTAGTTTTTTG TTTTGTTTAGGTATGTTTATGGACAGAAAGAGGAGGTGGATGAACATGCTTTCTTCACTGAGCCTTCTGGTGTTATGAAA AGCTTCTCTGCTTCCTCTATGGATGATCCTTGGCAACTCACACCACTTACTATGAGCTCCTCATCATCTTCTTCAACATC AAAACAGAGGAGTTGCTCTGGTTTGTCTAGTGATTACTCTTACTTGCAACTTCAGAGCCTCAGTGAGCACTCAAAACAGC AACAGCAAGATCAGGGTTGCTACCTGTTAGGAGGTGAAATCATGAAAATGGGAAAAGAAGAGCCTCAGAGAACAGTTCAC CGCTTCTTTGATGAGTTGCCCCACAAAAGCAGAGAAGGGTCATGGCTTGATTTGGATGATAAATCTTCCACTACCCAGCT ATCAATTTCCATTCCAACCTTCAACTCCAGAACTCACCATGGTAATTGCAATGAACACCTAAAGAAACCACCACCTATTC ATGTCAATTTCTTTGATTGTTCTGTTTTTTTCTTGAGCATCATGCCTTGTCATTTTTCTATAACATTCATATTGTTTTGC AGATGGGACTTGAGCTTAGATTTCAATCATGTGGGTGTACCTGAGTCAAATGTCAACTATATGTCTACAAGGTCAAAGTG GGGTTCAGATGCTGATGACAATGTTTAGTGTGTTGTACTTGTATGCTAATGTTTTCTTTGTTAAGTTCTACCTTCCAAAC ATGGTATCAAATCTGTATAATGTTTGGCCTAACAATGCTGGCACATCGTTTTTTCTTTTTCTTCTGTTTTATTTATGTTT GTATAACTTTTCTGCTTAATAGCATGATGTTAGCAACTGTAATATTGGGTGCATAATTGCCCCAGGATTTGCTAGTTTGT CACTTCTTAGCATCCAAATTAAGTGCATTGGCTAGGACCCTCTTTGTAAAGTTAAACCAAAGGGAAACTAGTTGATTTGC TTAATAAGGAGAAACACCCTTGCCCTTATGGAAACAATGATTGCACAAATTTTATTTTTCAC
CDS sequence (LotjaGi6g1v0225700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGAAGGAACAGGTTCCCTTTTACTCCGTCACAGTGGCAAGAGCTTGAACATCAAGCTCTTATCTACAAGTACAT GGCTTCTGGTAACTCCATCCCACCTGATCTTCTCTTCACTATTAGAAGAAGCTACTTGGATTCTCCTTTGCCTTCAAGGC TTATGCCTAACCAATCACAACACTTTGGATGGAACTACCTGCAAATGGGGTTAGGAAGAAAAATAGACCCAGAGCCAGGT AGGTGCAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGATGCATACCCAGATTCCAAGTACTGTGAGAGGCACAT GCACAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCAACAACAACAAATGCAACACCAGTAGCAT TCTCATCAATCACAAGAAATAGCCCAGCACTAACCCCAACTAATAATTCTCTTTCACCACTTTCATCTTCTTGTGTGTCC TCTGAGACAAACCATCACCAATCTCAACATTCTGGCTTCTATGGTTCTCATCTTCAGCACTCGTTTCTCTATGATCACCC TTCATCAAGGCCTTCTGGTATTGGTTTCTCATTTGAAGACAACAATAGCAGTGCTTCTTTGTTTCAGGACACTGGCTCTT ATTCTCAGACTAATGACAACTGCAGGTATGTTTATGGACAGAAAGAGGAGGTGGATGAACATGCTTTCTTCACTGAGCCT TCTGGTGTTATGAAAAGCTTCTCTGCTTCCTCTATGGATGATCCTTGGCAACTCACACCACTTACTATGAGCTCCTCATC ATCTTCTTCAACATCAAAACAGAGGAGTTGCTCTGGTTTGTCTAGTGATTACTCTTACTTGCAACTTCAGAGCCTCAGTG AGCACTCAAAACAGCAACAGCAAGATCAGGGTTGCTACCTGTTAGGAGGTGAAATCATGAAAATGGGAAAAGAAGAGCCT CAGAGAACAGTTCACCGCTTCTTTGATGAGTTGCCCCACAAAAGCAGAGAAGGGTCATGGCTTGATTTGGATGATAAATC TTCCACTACCCAGCTATCAATTTCCATTCCAACCTTCAACTCCAGAACTCACCATGATGGGACTTGA
Protein sequence (LotjaGi6g1v0225700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGRNRFPFTPSQWQELEHQALIYKYMASGNSIPPDLLFTIRRSYLDSPLPSRLMPNQSQHFGWNYLQMGLGRKIDPEPG RCRRTDGKKWRCSKDAYPDSKYCERHMHRGKNRSRKPVEVLKTSTTTNATPVAFSSITRNSPALTPTNNSLSPLSSSCVS SETNHHQSQHSGFYGSHLQHSFLYDHPSSRPSGIGFSFEDNNSSASLFQDTGSYSQTNDNCRYVYGQKEEVDEHAFFTEP SGVMKSFSASSMDDPWQLTPLTMSSSSSSSTSKQRSCSGLSSDYSYLQLQSLSEHSKQQQQDQGCYLLGGEIMKMGKEEP QRTVHRFFDELPHKSREGSWLDLDDKSSTTQLSISIPTFNSRTHHDGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 358 | 357 | 5.9E-97 | – | |
| PANTHER | 2 | 358 | 357 | 5.9E-97 | ||
| SMART | 7 | 43 | 37 | 7.3E-12 | ||
| ProSiteProfiles | 8 | 43 | 36 | 21.927 | ||
| Pfam | 8 | 42 | 35 | 6.7E-15 | ||
| ProSiteProfiles | 76 | 120 | 45 | 24.98 | ||
| Pfam | 77 | 119 | 43 | 9.9E-21 | ||
| MobiDBLite | 131 | 172 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Developmental process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. |
Expression pattern of LotjaGi6g1v0225700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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