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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0225900 |
| Transcript ID | LotjaGi6g1v0225900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G35550.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJA2|TT2_ARATH Transcription factor TT2; TrEMBL-Plants: tr|B1B3F3|B1B3F3_LOTJA R2R3-MYB transcription factor LjTT2b; Found in the gene: LotjaGi6g1v0225900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53192526..53194081) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAACCAACGTACACTCTCTCTTTCTGAAACCCACAATACTTAGGCAAAACACCATTTCCTCATTTGTGAGAGTGAA ATGGGAAGAAGCCCTTGTTGTTCAAAGAAGGGTTTGAATCGAGGTGTCTGGACAGCACAGGAAGACCAATTCCTCCGAGA TTATGTTAATCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGTGCAGGTAATTAACTAATTAACATCCTAGCTA GCTAATATCATTGTTATTATATTTTAATATCATCAATATCACTCACATGTGATGTGCTTTGCAGGTTTGAAGCGTTGTGG CAAAAGCTGCAGACTTCGATGGCTGAATTATCTAAGACCAGGTATCAAGAGAGGCAATATATCAACAGATGAAGAAGAAC TTATCATTCGACTTCATAAACTATTAGGAAACAGGTAGGTTCTCTCCTTTTCTTTCTACATTATTAATTGGAAAATAATA TTTATATATATACATCTGCATAATGCAGACATCCAATAGACATTAATATAAGTAATTTACGTGATATATGATAATTAACA AAGAGATTGATAGAAAAATATGATGAATGTTTACATTGTTTGTATATATGAATATCATTATTCTTATTAATTTGTCCTTC TTTTTGTTTTCATAAAATTACAATTAGATTAATTAATGTAATGTGAGTGTTTTGTTTGATTGTTCATGGTAGATGGTCTC TCATAGCTGGAAGGCTTCCAGGCCGAACAGACAATGAGATAAAGAATTACTGGAACACCAATTTATGTAAAAAAGTTCAA GATGGTGTTATGGCTGGTGAGTCTAAAACCAAAACCCCATCTACACAGGAGAAAAACCTGCATCATGATCATCAGAAAGC AAAGGCTCAATCAATTACTCCTTCACCCCCTAAAAACAATATGATATATACAAAGGCATCCAAGTGCTCCAAGGTGCTTC TCCTGGATCCTGTTCTCCCTTGTCCGTCAATGCAAATGCAGAGCGACAATTTCATCACAGAATTATTAGAAGAAGCAGGA GCAGAGTCATTGCTTGTGGATCATGATAGTGCTGCCACCAAAGAAGATGGAATTCTGGCATTTCTCTTTGATGATGATGA GAAGGAACTCTCCACTGATATTTCGCTCTTGGATTTTGACATTGGCGAAATTCACTTGCCTGATTTGCTCAACTCCAATC TCTGGGATGGGTGTGAACTGAATTGACTTGAGCTACAACAACCAAGAGGATCTAATGCCTTTTTGGAGAGGGCACAAAAA CCTTGGTGATGTGACAAATTTAGCAAATATCTGCTTTTCGAGTCACTAGCCCTCCACCGCAATAAATTTCGAGTCACTAG TCCTTCACTCATTGGTCCAACTTAAAAATTATTTATTGGTGTTTGTTGCATGTGGTATCTAAAATCAGATTAATGTATGA TACCTAAAATGAGGTGTACAAATAAACATACATGTTCTGATTGAATCTACATTTATATATTTAGATTAATATTTTCTTTT ATAAATTTTAAATATTAATATTATTTTCAAAGTAAT
CDS sequence (LotjaGi6g1v0225900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAAGCCCTTGTTGTTCAAAGAAGGGTTTGAATCGAGGTGTCTGGACAGCACAGGAAGACCAATTCCTCCGAGA TTATGTTAATCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGTGCAGGTTTGAAGCGTTGTGGCAAAAGCTGCA GACTTCGATGGCTGAATTATCTAAGACCAGGTATCAAGAGAGGCAATATATCAACAGATGAAGAAGAACTTATCATTCGA CTTCATAAACTATTAGGAAACAGATGGTCTCTCATAGCTGGAAGGCTTCCAGGCCGAACAGACAATGAGATAAAGAATTA CTGGAACACCAATTTATGTAAAAAAGTTCAAGATGGTGTTATGGCTGGTGAGTCTAAAACCAAAACCCCATCTACACAGG AGAAAAACCTGCATCATGATCATCAGAAAGCAAAGGCTCAATCAATTACTCCTTCACCCCCTAAAAACAATATGATATAT ACAAAGGCATCCAAGTGCTCCAAGGTGCTTCTCCTGGATCCTGTTCTCCCTTGTCCGTCAATGCAAATGCAGAGCGACAA TTTCATCACAGAATTATTAGAAGAAGCAGGAGCAGAGTCATTGCTTGTGGATCATGATAGTGCTGCCACCAAAGAAGATG GAATTCTGGCATTTCTCTTTGATGATGATGAGAAGGAACTCTCCACTGATATTTCGCTCTTGGATTTTGACATTGGCGAA ATTCACTTGCCTGATTTGCTCAACTCCAATCTCTGGGATGGGTGTGAACTGAATTGA
Protein sequence (LotjaGi6g1v0225900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCSKKGLNRGVWTAQEDQFLRDYVNLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYLRPGIKRGNISTDEEELIIR LHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKKVQDGVMAGESKTKTPSTQEKNLHHDHQKAKAQSITPSPPKNNMIY TKASKCSKVLLLDPVLPCPSMQMQSDNFITELLEEAGAESLLVDHDSAATKEDGILAFLFDDDEKELSTDISLLDFDIGE IHLPDLLNSNLWDGCELN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 244 | 244 | 3.0E-87 | ||
| PANTHER | 1 | 244 | 244 | 3.0E-87 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 16.39 | ||
| Gene3D | 11 | 67 | 57 | 2.9E-17 | – | |
| SUPERFAMILY | 12 | 108 | 97 | 7.11E-29 | ||
| SMART | 13 | 63 | 51 | 5.8E-13 | ||
| Pfam | 14 | 61 | 48 | 1.8E-14 | ||
| CDD | 17 | 61 | 45 | 5.86761E-10 | ||
| ProSiteProfiles | 62 | 116 | 55 | 23.467 | ||
| SMART | 66 | 114 | 49 | 6.6E-14 | ||
| Pfam | 67 | 111 | 45 | 9.0E-14 | ||
| Gene3D | 70 | 148 | 79 | 3.6E-19 | – | |
| CDD | 71 | 112 | 42 | 6.2305E-12 | ||
| MobiDBLite | 122 | 156 | 35 | - | – | |
| MobiDBLite | 131 | 145 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0225900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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