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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0226000 |
| Transcript ID | LotjaGi6g1v0226000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G35550.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|P10290|MYBC_MAIZE Anthocyanin regulatory C1 protein; TrEMBL-Plants: tr|B1B3F2|B1B3F2_LOTJA R2R3-MYB transcription factor LjTT2a; Found in the gene: LotjaGi6g1v0226000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53212199..53214231) extracted from Lotus japonicus Gifu genome v1.2.
GTTATGGCAGCCAAATTCAATTATAAAACGTGATGAGATTGTTAGGAGTACTTTACTAGACCCTAGCCAGGTCCCCCCCA ACAACAACAAAATACAGAGTTAGACACTTCACCGTACAAAATTCACAATAAGAACCACCCCACACTTTGTCTAGTTTGTG AAATCTACAACTAGGAAACACATTTGTGAGAGTGAGATGGGAAGAAGCCCTTGTTGTTCAAAGCAGGGTTTGAACCGAGG TGCCTGGACAGCACAGGAAGACCAAATCCTCCGAGACTATGTTCATCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTC AAAGTGCAGGTCTTTAATTAACAACTTAATTTACAATAAGCTAAAGTTCCCTTTCTTTTTCCTTTTTTTTATAGTGGGGT ACATGTTTGAAAATATTATTTTGATTTTAAAGTCACAATTCTGAGTTATGACTAGAAGTTATGTGAATAGCTTCTATGTG TCAGAATTTATTATGAGGAAATAGAAGTTCCGTAAGTGAGTCGCTTATGAGCGATAGAATTAATTGTTTCCCTATTCATG AGCACTACTATCATTGTATACTATCATTGTATTATCATCAATCATATGTTATTGCTCATGAGGTATGTGTTAAATGTGTA GGTTTGAAACGTTGTGGCAAAAGCTGTAGACTTAGATGGTTGAATTATCTAAGACCAGATATCAAGAGAGGCAATATATC CAGAGATGAAGAAGAGCTTATCATCCGACTTCACAAGCTCCTAGGAAACAGGTACCTAGCTCCTAGAAATTATTTGCATT ATTTGTTCTAGTCAAAATCAATTCTGGAGACGAGCTTTCGTCAGTAGCTTCTAGGTGTCAGGATTGATTCTGATTAAAAA GAAGTCAATCCAAACCTGCTATAACACTGCTAAAGTACAATGTAACCAATGTGAGTGTTTGTTTTCATTGTGGTAGATGG TCTCTAATAGCTGGAAGGCTTCCAGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCAATCTATGTAAAAGAGT TCAAGATGGTGTTGATGTTGGTGACTCCAAAACCCCATCTTCACAAGAAAAGAACAATCACCATGATCAGAAAGCAAAGC CTCAATCTGTTACTCCCTCAGTATTCTCCTCATCACAGCCTAAAAACAATAATGTGATTCGTACAAAGGCATCGAAGTGC TCCAAGGTGCTGCTCCGGGATCCTCTTCTCCCTTGCCCGCCAATGCAAACGCAGAGCGACGATTTCATCGCAAAATTATT AGAAGAAGCAGAAGGAGAGCCATTGCTTTCTGCTGTGGCCAATGATTTTACTAGTGGCGACGAAGACGGGGTTCTTTCAT TTGATCCTTGTGGAAATGAGAAGGAACTCTCCACGGATTTGCTCTTGGATTTGGACATTGGTGAAATTTGCTTGCCTGAA TTTATCAACTCAGATTTTTCATATGTGTGTGACTTCAGCTACAACACTCATGAGGATCTAATGCTTTTTTCCGAGAACAC ACTTGTCCAGGCACAGAAGTACCTCGGTGATGAAACAAATTTGGTAAATAATTGTTTTAATGAGGAGAAGGATAATGGTT GCTAACCATTGTCCTTTGTTAATTTCCTCCATACCTCAATAAATTTTGAGCGAGTAGTCACTCACTCATTTGGTCTGTTT CCATTTTTCACTCATTTTCACTCTTTGTATCTTGTTAAAAAAAATTATATCATTACTCATTATATTTCTCAAGGTTTGGA TGAATTTAGAGTATGAATAAACTTTTAAATTGTTTGTTCTTGAAAGATATATACGACTTTGCACATTGTTATTTTTGTTA TTGAAAAATCTCTGAAGGTTTGGATGAATTTAGAGTATGAATAAACTTTTAAATTGTTTGTTCTTGAAAGATATATACGA CTTTGCACATTGTTCTTTTTGTTATTGAAAAATCTCTCAAGGTTTGGATGAATTTAGAGTATGAATAAACTTTTAAATTG TTTGTTCTTGAAAGATATATACGACTTTGCACA
CDS sequence (LotjaGi6g1v0226000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAAGCCCTTGTTGTTCAAAGCAGGGTTTGAACCGAGGTGCCTGGACAGCACAGGAAGACCAAATCCTCCGAGA CTATGTTCATCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGTGCAGGTTTGAAACGTTGTGGCAAAAGCTGTA GACTTAGATGGTTGAATTATCTAAGACCAGATATCAAGAGAGGCAATATATCCAGAGATGAAGAAGAGCTTATCATCCGA CTTCACAAGCTCCTAGGAAACAGATGGTCTCTAATAGCTGGAAGGCTTCCAGGAAGAACAGACAATGAGATAAAGAACTA CTGGAACACCAATCTATGTAAAAGAGTTCAAGATGGTGTTGATGTTGGTGACTCCAAAACCCCATCTTCACAAGAAAAGA ACAATCACCATGATCAGAAAGCAAAGCCTCAATCTGTTACTCCCTCAGTATTCTCCTCATCACAGCCTAAAAACAATAAT GTGATTCGTACAAAGGCATCGAAGTGCTCCAAGGTGCTGCTCCGGGATCCTCTTCTCCCTTGCCCGCCAATGCAAACGCA GAGCGACGATTTCATCGCAAAATTATTAGAAGAAGCAGAAGGAGAGCCATTGCTTTCTGCTGTGGCCAATGATTTTACTA GTGGCGACGAAGACGGGGTTCTTTCATTTGATCCTTGTGGAAATGAGAAGGAACTCTCCACGGATTTGCTCTTGGATTTG GACATTGGTGAAATTTGCTTGCCTGAATTTATCAACTCAGATTTTTCATATGTGTGTGACTTCAGCTACAACACTCATGA GGATCTAATGCTTTTTTCCGAGAACACACTTGTCCAGGCACAGAAGTACCTCGGTGATGAAACAAATTTGGTAAATAATT GTTTTAATGAGGAGAAGGATAATGGTTGCTAA
Protein sequence (LotjaGi6g1v0226000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCSKQGLNRGAWTAQEDQILRDYVHLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYLRPDIKRGNISRDEEELIIR LHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKRVQDGVDVGDSKTPSSQEKNNHHDQKAKPQSVTPSVFSSSQPKNNN VIRTKASKCSKVLLRDPLLPCPPMQTQSDDFIAKLLEEAEGEPLLSAVANDFTSGDEDGVLSFDPCGNEKELSTDLLLDL DIGEICLPEFINSDFSYVCDFSYNTHEDLMLFSENTLVQAQKYLGDETNLVNNCFNEEKDNGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 277 | 277 | 2.1E-91 | – | |
| PANTHER | 1 | 277 | 277 | 2.1E-91 | ||
| ProSiteProfiles | 9 | 65 | 57 | 23.944 | ||
| Gene3D | 11 | 67 | 57 | 5.2E-18 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 1.54E-28 | ||
| SMART | 13 | 63 | 51 | 1.4E-13 | ||
| Pfam | 14 | 61 | 48 | 2.6E-15 | ||
| CDD | 16 | 61 | 46 | 8.75801E-11 | ||
| ProSiteProfiles | 66 | 116 | 51 | 18.989 | ||
| SMART | 66 | 114 | 49 | 6.2E-14 | ||
| Pfam | 67 | 111 | 45 | 2.6E-13 | ||
| Gene3D | 70 | 146 | 77 | 3.0E-19 | – | |
| CDD | 71 | 112 | 42 | 2.56616E-12 | ||
| MobiDBLite | 119 | 157 | 39 | - | – | |
| MobiDBLite | 141 | 157 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0226000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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