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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0226300 |
| Transcript ID | LotjaGi6g1v0226300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G35550.1 Duplicated homeodomain-like superfamily protein; Swiss-Prot: sp|Q9FJA2|TT2_ARATH Transcription factor TT2; TrEMBL-Plants: tr|B1B3F4|B1B3F4_LOTJA R2R3-MYB transcription factor LjTT2c; Found in the gene: LotjaGi6g1v0226300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53235125..53236927) extracted from Lotus japonicus Gifu genome v1.2.
GGCAAAACACCATTTTCACATTGTGAGGGGTGAGATGGGAAGAAGCCCTTGTTGTTCAAAGAAGGGTTTGAATCGAGGTG CCTGGACATCACAGGAAGATAAAATACTCCGAGATTATGTTCATCTCCATGGCCAAGGAAAATGGAGAAATCTTCCTCAA AGTGCAGGTAATTAATCAACATCTTAATATCATTATCATTATATTTTAATATCATTTTCACTCACATGTGAAGTGCTGTG TAGGTTTGAAGCGTTGTGGGAAAAGCTGTAGACTTAGATGGTTGAATTATCTGAAACCAGGTATCAAGAGAGGCAATATA TCAACAGATGAAGAAGAGCTTATTATTAGACTTCACAAACTCCTAGGAAACAGGTTCTCTCTTTCTACATTATTGATGGA GAAAAAAATATTTATAAAGATTCACATAATGACATTCAATAGCTAATCAAGTCGTGAGAAATGAAGATGAGAGAGTAATT AACGTGATTTAGGATAAATGAGAGCGATCGAGAGAAAAATGTGGTGTTTATTAAGTGTTCCCACTATTTGTACTATAACA TTGTTAATTTGACTTTTTTTTTGTCGTAAAAATTACAAAGTTCAATAATTTATAAACAGACATCCAACAAATAACTCAAA TTGAGAATGGAAGAAAAGATATAATAGATGTGGTATATGATAGAAAAAATAGATATAAAAAAAAATTGAGATGTCAATAA TGTTTGTATTATTTGTATGTTTGAGTATCATTATTCCTGAAATTACAATTACATTAATGTAATGTGAGTGTTTTGTTTGA TTGTGGTAGATGGTCTCTCATAGCTGGAAGACTTCCAGGACGAACAGACAACGAGATAAAGAACTACTGGAACACCTATT TATGTAAAAAAGTTCAAGATGGTGTTGGTGGTGACTCCAAAACCAAAGCCCCATCTTCACAAGAAAAGAGTCATCAGCCA AAGCCTCAATCAATACTTGAAAATAATAATGTGATTCGTACAAAGGCATCCAAGTGTTCCAAATTGTTGCTCATAGATCC TCCTTTCCCTTGCGCATCATCAATGCAAAAGCAGAGCGATTTCATGGTAGAATTAATAAAACCAGAAGCAGAGCCCTTGC TTGTGGTTGATATTGCTGCAGCCAATGATGATGATGAGAAGGAACTCTCCACAGATTTGCTCTTGGACTTTGATATTGGC GAAATTTGCTTATCAGATTTTTTCAACTCCGATTTTTGGGAGGTGCCTGACTTCAATCACAACATTAACCATGATGATCA AATAATCTAATGCCCTTTTCAGAGCACCCATGCACTTTTCAAGACACAGAAATACCTTGGTGACAACACAAATGTCGCAA ATAACAGTTTTTGTGAGAAGGATAATGGTTGCTAGCCATTGCCAATGTACATTCTTATTTTCCTCCACCTTAATAAATTT CGAGTCACTAGTTATTTGTATTTTGTTCCTATGTTTTCATACATGACACCTATTTTCCTTTTCATTTAATTTTCATGTAT TTTCTCTTTTTTTTTTATTTGTGTTATTTTTCTATCACATCACTATTATATTTAGGTGTTTGTTGTGATACCTTAAGTCA GACCAAGGTATAGTACCCAGAATGAGTTGACATAGTAATAAAGACTCATGTATCACATAAGTTAGCAATTGTATTTTTCC AATAATGTAGCTTAAGATTAATGGTGTCAATTTGATCAGTGTTAGGCATCTCCCTTGATTGAAACCATGTCGCTCACGCC CAATGCTATGATTGAGATTGGCAGCAACCGCTTCAAGGTCGCC
CDS sequence (LotjaGi6g1v0226300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAAGCCCTTGTTGTTCAAAGAAGGGTTTGAATCGAGGTGCCTGGACATCACAGGAAGATAAAATACTCCGAGA TTATGTTCATCTCCATGGCCAAGGAAAATGGAGAAATCTTCCTCAAAGTGCAGGTTTGAAGCGTTGTGGGAAAAGCTGTA GACTTAGATGGTTGAATTATCTGAAACCAGGTATCAAGAGAGGCAATATATCAACAGATGAAGAAGAGCTTATTATTAGA CTTCACAAACTCCTAGGAAACAGATGGTCTCTCATAGCTGGAAGACTTCCAGGACGAACAGACAACGAGATAAAGAACTA CTGGAACACCTATTTATGTAAAAAAGTTCAAGATGGTGTTGGTGGTGACTCCAAAACCAAAGCCCCATCTTCACAAGAAA AGAGTCATCAGCCAAAGCCTCAATCAATACTTGAAAATAATAATGTGATTCGTACAAAGGCATCCAAGTGTTCCAAATTG TTGCTCATAGATCCTCCTTTCCCTTGCGCATCATCAATGCAAAAGCAGAGCGATTTCATGGTAGAATTAATAAAACCAGA AGCAGAGCCCTTGCTTGTGGTTGATATTGCTGCAGCCAATGATGATGATGAGAAGGAACTCTCCACAGATTTGCTCTTGG ACTTTGATATTGGCGAAATTTGCTTATCAGATTTTTTCAACTCCGATTTTTGGGAGGTGCCTGACTTCAATCACAACATT AACCATGATGATCAAATAATCTAA
Protein sequence (LotjaGi6g1v0226300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCSKKGLNRGAWTSQEDKILRDYVHLHGQGKWRNLPQSAGLKRCGKSCRLRWLNYLKPGIKRGNISTDEEELIIR LHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLCKKVQDGVGGDSKTKAPSSQEKSHQPKPQSILENNNVIRTKASKCSKL LLIDPPFPCASSMQKQSDFMVELIKPEAEPLLVVDIAAANDDDEKELSTDLLLDFDIGEICLSDFFNSDFWEVPDFNHNI NHDDQII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 231 | 231 | 1.1E-88 | – | |
| PANTHER | 1 | 231 | 231 | 1.1E-88 | ||
| ProSiteProfiles | 9 | 61 | 53 | 16.63 | ||
| Gene3D | 11 | 67 | 57 | 1.6E-17 | – | |
| SUPERFAMILY | 12 | 108 | 97 | 1.61E-28 | ||
| SMART | 13 | 63 | 51 | 5.7E-13 | ||
| Pfam | 14 | 61 | 48 | 3.3E-15 | ||
| CDD | 16 | 61 | 46 | 6.6787E-10 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.584 | ||
| SMART | 66 | 114 | 49 | 1.9E-14 | ||
| Pfam | 67 | 112 | 46 | 8.5E-15 | ||
| Gene3D | 70 | 144 | 75 | 1.6E-19 | – | |
| CDD | 71 | 112 | 42 | 2.62229E-12 | ||
| MobiDBLite | 122 | 143 | 22 | - | – | |
| MobiDBLite | 124 | 143 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0226300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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