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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0229000 |
| Transcript ID | LotjaGi6g1v0229000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072V4N6|A0A072V4N6_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi6g1v0229000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53630560..53631911) extracted from Lotus japonicus Gifu genome v1.2.
CCACACTCATATTATCTATCTTGATTAGCATCATGCTAGAGATTGAAGAAATGGCTAAAGAACATATACCAGCAGAGTTA GTGATGAAAATATTTGTTAGGCTCCCTGTAAAGTCTGTTCTGCGATTCCGAACCTTAAACAAATCCTACAATGCTCTCAC CAGAGAAACCAGTTTCATCACTAAACATCTTTATCACTCCATTGAAAAGGCAAAAAGCAATCCGAACTTTCTGATCTTTT ACCAAACAAACAAGCTTGTCAATTCAACAGTCTCTGAAGATAAGCAATCACAACCCCATGCAATTGATCTGAATACACCA TTCATCTCAGTACATGTAAACAACATCGGAGCTTGCTCTCATTTCAATAGCATCATCTACCTTGAACTATTTGGTGTTCC TCTTAGGCCCAATCCAAAGATTCTCCGGAATCCAGCCACCATAGAAGTAAGGTTTCTACCTTTCCCTCCTCAAATGAAAC CCACGCTCTTTACCCTCTTCCATGGGGTCCACGGGTTCGGTGTCAATCCCATAACAAATGACTTCAAGGTCGTAAACATT GTAGTGGATGCAAAAATTTGGGATAGAAGTGATAGAAAGCTCATTGGTCAGGTATATAACCTTCGTTCTGAATCATGGAA AATGGTTATTGCTTGTGTCCTTGCTTATTTCATATATAAATCCATGTTTAATGCTTATCTGAATGGGGTTTATCATTGGT TAGCCATATCTTCTCTACGTGATCATGTCGAATTTGTGCTATGTTTTGACATGAGTGATGATGTGTTTTGGAAAATGAAC CTACCCCAATTTCCGTCCCAGGAGGAGTATAACGAATTGTGCGTATCCAATCATAATGTTATTGTTTTGAATGATCGTAT TGGTTATGTTAGGGAGTACACTATGCATTTTGAAATTCAGTTTGATATTTGGGTGATGAATGACTATGGGGTGGAAGGTT TCTGGGTGAGAATGTTTAACATTGCGCGTGGAACCGGTCTGGGAAAGATTTTGGAGATTTGGAAAGATGATAATATTGAT GATGTTGTTGTGCTGGGAGGGGAAGAACATCATCCATTGGTTTTGTACAAGATTGGTCAACAACAGGTGGTGAAAGAGTT TAATGTTCGCTTATGAGCTGAGCATCGTGTAGTTGGATATGTGGAAAGTTTTCTTCCCTTGTCTAGCTAGCTTGGTTGAT GAGGAAGCTTGATGTTCAAGTCGGATTATTTTATCGTGATATTTATTTGATGATCTTTGTGATGATTTATGTTATTACTA TCATGAAGGTACATTATTAGTTGTGTACTTTTTATTGACTTTTACTATAAGGCCCGAGTTTTTAAGTTCATG
CDS sequence (LotjaGi6g1v0229000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGAGATTGAAGAAATGGCTAAAGAACATATACCAGCAGAGTTAGTGATGAAAATATTTGTTAGGCTCCCTGTAAA GTCTGTTCTGCGATTCCGAACCTTAAACAAATCCTACAATGCTCTCACCAGAGAAACCAGTTTCATCACTAAACATCTTT ATCACTCCATTGAAAAGGCAAAAAGCAATCCGAACTTTCTGATCTTTTACCAAACAAACAAGCTTGTCAATTCAACAGTC TCTGAAGATAAGCAATCACAACCCCATGCAATTGATCTGAATACACCATTCATCTCAGTACATGTAAACAACATCGGAGC TTGCTCTCATTTCAATAGCATCATCTACCTTGAACTATTTGGTGTTCCTCTTAGGCCCAATCCAAAGATTCTCCGGAATC CAGCCACCATAGAAGTAAGGTTTCTACCTTTCCCTCCTCAAATGAAACCCACGCTCTTTACCCTCTTCCATGGGGTCCAC GGGTTCGGTGTCAATCCCATAACAAATGACTTCAAGGTCGTAAACATTGTAGTGGATGCAAAAATTTGGGATAGAAGTGA TAGAAAGCTCATTGGTCAGGTATATAACCTTCGTTCTGAATCATGGAAAATGGTTATTGCTTGTGTCCTTGCTTATTTCA TATATAAATCCATGTTTAATGCTTATCTGAATGGGGTTTATCATTGGTTAGCCATATCTTCTCTACGTGATCATGTCGAA TTTGTGCTATGTTTTGACATGAGTGATGATGTGTTTTGGAAAATGAACCTACCCCAATTTCCGTCCCAGGAGGAGTATAA CGAATTGTGCGTATCCAATCATAATGTTATTGTTTTGAATGATCGTATTGGTTATGTTAGGGAGTACACTATGCATTTTG AAATTCAGTTTGATATTTGGGTGATGAATGACTATGGGGTGGAAGGTTTCTGGGTGAGAATGTTTAACATTGCGCGTGGA ACCGGTCTGGGAAAGATTTTGGAGATTTGGAAAGATGATAATATTGATGATGTTGTTGTGCTGGGAGGGGAAGAACATCA TCCATTGGTTTTGTACAAGATTGGTCAACAACAGGTGGTGAAAGAGTTTAATGTTCGCTTATGA
Protein sequence (LotjaGi6g1v0229000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEIEEMAKEHIPAELVMKIFVRLPVKSVLRFRTLNKSYNALTRETSFITKHLYHSIEKAKSNPNFLIFYQTNKLVNSTV SEDKQSQPHAIDLNTPFISVHVNNIGACSHFNSIIYLELFGVPLRPNPKILRNPATIEVRFLPFPPQMKPTLFTLFHGVH GFGVNPITNDFKVVNIVVDAKIWDRSDRKLIGQVYNLRSESWKMVIACVLAYFIYKSMFNAYLNGVYHWLAISSLRDHVE FVLCFDMSDDVFWKMNLPQFPSQEEYNELCVSNHNVIVLNDRIGYVREYTMHFEIQFDIWVMNDYGVEGFWVRMFNIARG TGLGKILEIWKDDNIDDVVVLGGEEHHPLVLYKIGQQQVVKEFNVRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 6 | 57 | 52 | 9.233 | ||
| SUPERFAMILY | 11 | 71 | 61 | 1.44E-8 | ||
| PANTHER | 12 | 335 | 324 | 1.9E-27 | – | |
| PANTHER | 12 | 335 | 324 | 1.9E-27 | – | |
| TIGRFAM | 129 | 319 | 191 | 4.9E-22 | ||
| Pfam | 222 | 363 | 142 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0229000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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