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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0229100 |
| Transcript ID | LotjaGi6g1v0229100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A161XUL7|A0A161XUL7_DAUCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0229100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53651798..53653065) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTTTCGATATGAGCTGAGTTTTGATTTACCCACACTCATATTATCTATCTTGATTAGCATCATGCTATAGATTGA AGAAATGGCTAAAGAACATATACCAGCAGAGTTAGTGATGAAAATATTTGTTACGCTCCCTATAAAGTCTGTTCTGCGAT TCCGAACCTTAAACAAATCCTACAATGCTCTCACCAGAGAAACCAGTTTCATCACTCAACATTTTTATCACTCCATTGAA AAGGCAAAAAGCAATCCGAACTTTCTGATCTTTCACCAAACAAACAAGCTTGTCAATTCAACAGTCTCTGAAGATAAGCA ATCACAACCCCATGCAATTGATCTGAATACACCATTCATCTCAGTACATGTAAACAACATCGGAGCTTGCTCTCATTTCA ATGGCATCATCTACCTTGAACCGTTTGGTGTTCCTCTTAGGCCCAATCCAAAGATTCTCTGGAATCCAGCCACCATAGAA GTAATGTTTCTACCTTTCCCTCCTCAAATGAAACCCACGCTCTTTACCCTCTTCCATGGGGTCCACGGGTTCGGTGTCAA TCCCATAACAAATGACTTCAAGGTCGTAAACATTGTAGTGGATTCAAAGATTTGGGATAGAAGTGATAGAAAGCTCATTG GTCAGGTATATAGCCTTCGTTCTGAATCATGGAAAGTGGTTAATGCTAGTGTCCTTGCTTATTTCATATATAAATCCATG TTTAATGCTTATCTGAATGGGGTTTATCATTGGTTAGCCATATCTTCTCTACGTGATCATGTCAAATTTGTGCTATGTTT TGACATGAGTGATGATGTGTTTTGGAAAATGAACCTACCCCAATTTCCGTCTCAGGAGGAGAATAACGAATTGTGCGTAT CCAATCATAATGTTGTTGTTTTGAATGATCGTATTGGTTATGTTAGGGAGTACACTATGCCTTTTGAAATTCAGTTTGAT ATTTGGGTGATGAATGACTATGGGGTGGAAGGTTCCTGGGTGAGAATGTTTAACATTGCGCATGGAACCGGTCTGGGAAA GATTTTGGAGATTTGGAAAGATGATAATATTGATGATATTGTTGTGCTGGGAGGGGAAGAACATCATCCATTGGTTTTGT ACAAGATTGGTCAACAACAGGTGGTGGAAGAGTTTAATGTTCGCTTATGAGCTGAGCATCGTGTAGTTGGATATGTGGAA AGTTTTCTTCCCTTGTCTGGCTAGCTTGGTTGATGAGTAAGCTTGATGTTCAGGTCGGATTATTTTAT
CDS sequence (LotjaGi6g1v0229100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAAGAACATATACCAGCAGAGTTAGTGATGAAAATATTTGTTACGCTCCCTATAAAGTCTGTTCTGCGATTCCG AACCTTAAACAAATCCTACAATGCTCTCACCAGAGAAACCAGTTTCATCACTCAACATTTTTATCACTCCATTGAAAAGG CAAAAAGCAATCCGAACTTTCTGATCTTTCACCAAACAAACAAGCTTGTCAATTCAACAGTCTCTGAAGATAAGCAATCA CAACCCCATGCAATTGATCTGAATACACCATTCATCTCAGTACATGTAAACAACATCGGAGCTTGCTCTCATTTCAATGG CATCATCTACCTTGAACCGTTTGGTGTTCCTCTTAGGCCCAATCCAAAGATTCTCTGGAATCCAGCCACCATAGAAGTAA TGTTTCTACCTTTCCCTCCTCAAATGAAACCCACGCTCTTTACCCTCTTCCATGGGGTCCACGGGTTCGGTGTCAATCCC ATAACAAATGACTTCAAGGTCGTAAACATTGTAGTGGATTCAAAGATTTGGGATAGAAGTGATAGAAAGCTCATTGGTCA GGTATATAGCCTTCGTTCTGAATCATGGAAAGTGGTTAATGCTAGTGTCCTTGCTTATTTCATATATAAATCCATGTTTA ATGCTTATCTGAATGGGGTTTATCATTGGTTAGCCATATCTTCTCTACGTGATCATGTCAAATTTGTGCTATGTTTTGAC ATGAGTGATGATGTGTTTTGGAAAATGAACCTACCCCAATTTCCGTCTCAGGAGGAGAATAACGAATTGTGCGTATCCAA TCATAATGTTGTTGTTTTGAATGATCGTATTGGTTATGTTAGGGAGTACACTATGCCTTTTGAAATTCAGTTTGATATTT GGGTGATGAATGACTATGGGGTGGAAGGTTCCTGGGTGAGAATGTTTAACATTGCGCATGGAACCGGTCTGGGAAAGATT TTGGAGATTTGGAAAGATGATAATATTGATGATATTGTTGTGCTGGGAGGGGAAGAACATCATCCATTGGTTTTGTACAA GATTGGTCAACAACAGGTGGTGGAAGAGTTTAATGTTCGCTTATGA
Protein sequence (LotjaGi6g1v0229100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKEHIPAELVMKIFVTLPIKSVLRFRTLNKSYNALTRETSFITQHFYHSIEKAKSNPNFLIFHQTNKLVNSTVSEDKQS QPHAIDLNTPFISVHVNNIGACSHFNGIIYLEPFGVPLRPNPKILWNPATIEVMFLPFPPQMKPTLFTLFHGVHGFGVNP ITNDFKVVNIVVDSKIWDRSDRKLIGQVYSLRSESWKVVNASVLAYFIYKSMFNAYLNGVYHWLAISSLRDHVKFVLCFD MSDDVFWKMNLPQFPSQEENNELCVSNHNVVVLNDRIGYVREYTMPFEIQFDIWVMNDYGVEGSWVRMFNIAHGTGLGKI LEIWKDDNIDDIVVLGGEEHHPLVLYKIGQQQVVEEFNVRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 51 | 51 | 9.153 | ||
| PANTHER | 4 | 315 | 312 | 1.8E-28 | – | |
| PANTHER | 4 | 315 | 312 | 1.8E-28 | – | |
| SUPERFAMILY | 5 | 67 | 63 | 3.01E-7 | ||
| TIGRFAM | 102 | 312 | 211 | 1.1E-22 | ||
| Pfam | 216 | 315 | 100 | 1.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0229100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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