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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0229900 |
| Transcript ID | LotjaGi6g1v0229900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U3 small nucleolar RNA-associated protein 11; TAIR: AT3G60360.1 embryo sac development arrest 14; Swiss-Prot: sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11; TrEMBL-Plants: tr|I3STA5|I3STA5_LOTJA U3 small nucleolar RNA-associated protein 11; Found in the gene: LotjaGi6g1v0229900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53880295..53885802) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCCTAAACCCTGTTATCGCTATTCCCTCAAACTCGTTGGCCTCTGAAGCAGCTTCTTCTCTTCCGTAGACTCAAAAC CCCATCGGAAAGGCGCGAACGATTTCCATCCGCCCTCCACCACAGCCGGCGCCGATTCCGATTTCAAGGTATGTCTCCGT CGCCGTCGCTTATGCACAAGTAACTCCGACGCTGGTATAATTAGGATCAGAGATTTGGTATATGATGAATGCACTGCACT TCGTGTTTGATATTTGTGCGCTACTGCGATTTTGCTTTACAGAAGCTTTTTTCCTATTGATTCTGCTGATTGATAATTTT CTAGTTCTTCCAGTTTCTGCTCTAAGTTAATGGATTCTCATTATGCCGAAAACTCCATTGTTCATATCACAATCACACAC CACCGTTTTGATTTTTAGGGTTTTGCAAATTTCTCATTAGGTTTTGTTGTTTTCTCCTTTTGCAGACCAGAGCTGATTAT TCCAAACAACAAAGTTAGTTTTCTAGTTTCTTTCTGTGGTACAACATGTCATCCCTAAGGAACGCCCTTCCCAGGCGTGC TCACAAAGAACGCGCTCAACCGTGAGCTTCTTCGCCTTCTCTCACTCTCACTCCTTTGTCCTTTCCTATATTCAATCACA TTTTTGCTTCAATTTCTCATTTTTCATTTAGGTCGTCGAGGAAGAAATTTGGCCACCTTGAGAAACACAAGGACTATGTT GAACGTGCGAAAGCCTTCCACAAGAAAGAGGAGACATTGCGGGTATGACTTAATTCTGATTCTCTACACTGTTTTGTCAT GCATGTGTTAATGTTTTTTAGTTCTTTTCATTGATTGCTTTTTTTATTGTGTTGTCTCGCAGATACTTAGGGAAAAAGCT GCAAACAGAAACCAAGATGAGTTTTACTTTAAGATGATTAGAACCAGAACTGAAGATGGAGTTCATAGACCAGAGTAATT ACTTGCTGTCCTTTTTATTTTTCTGTTCCTCATTGCTGCTTGTCTCTTGCTGATTTGTTTTAACTTGCTGGGCTTATCTG TTTAGGAGTGAAGCAAACAAGTATACTCAGGATGAACTTATGTTGATGAAGACACAAGATTTAGGATATGTTCTTCAAAA GCTTCAGAGTGAGAGGAAGGTGAACCTGTGCATTTGATTTTGTTATCTTGTTTTACTTGTGGTTTCATGTGATATTTTGC GTTGGTGTTTACATTACGTGTGAATGTATGGATCTTACGTTGCAGAAAATTGAAAAGTTAGCTGCTTCTTTGCACTCCAT TGATAATCAGCCAACGAACAAGCATATCTTATTTGCTGAAGACAGGTTTGAGTTTCTGAGCTATCTTTCTATGAAAAATA TGAGGGATTTTTGTGTTTCAACATTGTCTCTTTTTATTTTTAGTTTTATATATTTATTTTTATGCTAAGAAATAGAAAAT TTTAGTGGTCAGATTTGAGAGATGGTCTCTGTAAATTTGATGAGAATAATCATTTCAAATTTATTCTGTAGTTAATGCTT AAGCCAAGTAACATGAGTTGGCTGTTGGTCCGTGTTGCTGAGTAGAGGATCAAAAGTAGGTAACATGGTTGTTTAGTATG ACTCAAGAGTTTACATAAACTCGTGGAGCGCCCATAAATTTGACCTGTAAATTCGTAAAATGCAAACAAAAAGAAACACA CAAACGATGAAAAACACTATCAAATTTTAAAACATACTTATATAACCAAATCATACAATGGAGAACTTATTAAAACAAGT TATAGTCATTCAGAAAAAATTACTGCTATAAGTTTGTAGCAAAAAAATTAATACAAAGTTCAGAAGGTAATAAACTGAAA ATGTCAAACAAGAGCAGATAAGTCATTATCTTCAAAATTCTCACGAGTTAAAAATCAAACTATTTTATATGCCTCTAGTT ATCAATTCTTAAATTGAAACTAAGGAATTTTTATAACACAGATTCAAAACCAAAGGATTTGTAGGCAATTTTAGTAATCA TACGGCTTACTCTAGTGCGCGGGCAAAGAAATATTAGTCAAAGTGACATAGGAGAGAGGGATTTGCAATCATTAAAAGTA ATACTGCAAAGATCGTGTCATGAAATGTTGTCGTTGTGGTAAAAATTGGGCTTTTCTCTATTTCTGGCTGAACTCGGCAG CCACGTGAGTCATCTGAGTTCGTCCGAGTTTATTAGCAAATGACTTTACATGTCATTTACTCAATTATGTGAGCTAGAAT CGTAAACTTGTACTATTTTACAAGTGAAAACTCGAGTTTAACAACTATGGTTGCTTGTGCAATTTATTTTATTTAGGTTT CTAATATATGTGCAAATGTTATTTGAAATTTAGTTATGTTATAACGTAGTTTCTTTTGGAAACTCTGATTTTTCTCTGGG GATATATTGTCAATTTCCATTAATTGACTGATGTTATTTTTCCACTTGAATTTTAAGTCATGGTATGATCCATGCAGCTG ACCCACTTGGTGGGAAAAGGCTTTGGTTGTTGCAGTGTTATCAAATAGCGGCTATAGCGGCCGCGACCCGCTATAGCGTA GCGGATTTTAGGGCCACCGCAATCGCTACGCCGCGACATAGCGGCCACCGCGAGAAACGCAATTGCGGCCGCGACGGCCG TAGCGGCGCTGGAAGCTAAACAGAAATAGCGGATTTTCAGGAATACTGCACGTTTTTTTTTTATTTTTTAGGGTTTTTAA ATATGGTAATTCAGTAATTCTTGACTAGTGGGCCACCAACTGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTT TCTTTTTCTGTTTCACTGCTTTACTGCCCAATTAACTCCCCATTAATTATTTTTTTCTATATTTACGCTTCATCATGAAG AATCACGACAGAATTGAAAAGGTTTCCAAAATCCTAATTCTCCTTCTCTCATCCTCCTTCTACAAGCCCCATTAATTCGT TTTTGTTGCATTTCCTTTTTCTGTTTCACTGTTTTAAGACTTGTGTTTGGTTTATGTTGTTTTAAGTCTTTTGACATTTG ATTTGAGCTGGTGGCACCCTTTAATAGTTAAAATTTGGTTGTTAAAAATGATGATTTTATGCAGTTTTTATTGTTATGTG ATAAGCTGTTGTTTTTTATGCAGTTTTTATTTGTTCATTTCAAATGTTTCTGCTCTAGTATTGCAATAGATGTCTGATAA GCTGCTTTTTTTTTTATAATATTTTACTTATTTTAACCGCTATGTGGTTACCGCTATTTGCTCGTGACGCTATCCGCTAA ACGCAATAGCGGATTTTGGCCTCACCGCGATTTTCCGCGATCGCGATTTGACAACACTGGGTTGTTGTTGTTGCATGTTA TTGGTCCACCACTTTTCCCTTTGCCCTCATCTTTGTCCTTCTGATTTTTATTATATGCGCGTATTTGTAGATTTTATCTT CATTCCTTAAATTTATTCTGGATGAATAAGCATTCTTAATCATTGCTCTGGATATGCAGGGAAGAGGCTAAAGAGTTACA ATCACAATATTCAAGAAGTGAAATTCCTCTTATTTCTGACAATATTCATACTAACATTAAAAGGTACACCTATGCATTCG GCCCTTTTCTCTTGGCGTATAATGGTTGCAATAAGCTTTGAACCTATTACATCATGCAAACTACCCAAGCTCCTCACCTT TAGTCCAATTTATATCATGCAAACTACCCAAACTACCCAAGCTTTGAACCTATTACATCATGCAAACTACCCAACCTATT ATATCAATTTATTCCTTTGTTTGTTTGATGTCTTCTACGGGAAAACATTTTCTTTATGTGATCTCTCCAATGCACTTTAA GATAGTTTATTTTAGTAAATATCTTAATTGCAGTCAGTGCCAACAGTATTAGGATGTTTTGTAGGTCACTTTGGTGGCCG AGTCTTAGCATCATTGCAGTATATAGGAATGATTGATTAACGCAATTACTTCTGCAATTTTCTTACCTAATTTCTTTGGC AATGAAAACACAATTCTTTCAATAAAGTTCCAGTCTTGGATATTAAAATAATGCTTCTTCTGCACCATGACTGATGAGCT TAATATCATGTGTTTGCATGTATATTACTGGGACATTTTTTATTAACAACTAAAATGCATGGTAGCTTGAAGTTTTGAGA ACTGGAGCTATATTTCAGAAGCGATGAGCTATGTTTAACCCAAAAAGAGAAAGAGGAGAAAAAAAGAGAGATGAATAACA ATAATGGTCAGATTAATTGCCATTACTTCTCAGCGATTTGACCGTAGTGAGGCATTTTTTTATTTGGGTTGATCTTTCAT GGAAAGCTGGCTTTACATTTTTCACTATGTGTTGAGTATTATGAGATTCATGTCTTGTCTACAGTACTATTATTACTTCC ACTCGTTCTTGATTTCTGGCACCATATCGCATTGCTAGAAAAAGTATTTTCTTTCTTGCGCAGGAAAATAGATCGGTCAT ACAAAGAGTTGGAAGCAAGGAGGACTAGACTCAGCCAGCTACAGAAAATGTACATGGATATGTCAATGAAGAAGGAGTTG CAGGTAATGGTATTTTGGATTTCCTTATCATGAACCTGTTTTGAGTCTTACATATGTGGACTGCTCAGAAAAGATGTTCC ATCTATGAACAGAAAAACGGTAGGAAGCGCAAACTACGCGAAGATGAGATTGTCTCTCCAACCACTGAGCCAGTTTACAA GTGGCGTGCTGAAAGAAAGCGTTAAAAAGAGAACTTTGAGCTGCTTCTTTATTCTTCCTGACCTTTCACCATAAGGCTGG CGACTGGAGCTCGAGAATATACGTATTACTTGAAGTAGAACTGAAAAAAACTTGCATGCCTAGCTGATGAAGCAAATTAA GTTGGATCACTACTGATGAATTCCATATTATGTAACACAATTATTTCACTCTGTTGAGTATCCTTCCATTTTCAATGTCT GTCACTTGACTGTGTCTCAAACTCTCAAGTCTTATGTTGTATCATGCAACTATTGGTTTAGCATGAGGCTGCTGCAAATG CTCTAAACATGCTTCCTACACATTGACTAATATTAATCTACGGCATAGGCTGTGATCGGTTTCAAAGACTTTCAAACAAC TAATGGCGTGTATGGTTTTGCGGTTGGAAACTCCATAATTACTGATAGGGAGAAGTTTTAATTTGGATTTACCGTGTTTT GGATTGTGCATCACTGTGAAGCCAAACATTTTATAACTAGCTTTCTATCAGCAACTTTCCCCCCATCCAAAGAACTAACA ACTAATATTTTCACCCCCACCCACTTGTGTCCCAAAATTTTAAGAGCTTATTTGTTTTACTTTTACAGCAAAAAATGAAG TGAGAGAACTGATTTTAAGTTTAAAAAATAGATTTTTATGCACAACTAATGTAACTCCAATTTACCCTCAGTCTTTACTG TAGTCCACACGCAGGTTGTCATTATTTGTTACTTTCGGTGTCTTTAGCCTAAACCACTTCACACTTGG
CDS sequence (LotjaGi6g1v0229900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCCCTAAGGAACGCCCTTCCCAGGCGTGCTCACAAAGAACGCGCTCAACCGTCGTCGAGGAAGAAATTTGGCCA CCTTGAGAAACACAAGGACTATGTTGAACGTGCGAAAGCCTTCCACAAGAAAGAGGAGACATTGCGGATACTTAGGGAAA AAGCTGCAAACAGAAACCAAGATGAGTTTTACTTTAAGATGATTAGAACCAGAACTGAAGATGGAGTTCATAGACCAGAG AGTGAAGCAAACAAGTATACTCAGGATGAACTTATGTTGATGAAGACACAAGATTTAGGATATGTTCTTCAAAAGCTTCA GAGTGAGAGGAAGAAAATTGAAAAGTTAGCTGCTTCTTTGCACTCCATTGATAATCAGCCAACGAACAAGCATATCTTAT TTGCTGAAGACAGGGAAGAGGCTAAAGAGTTACAATCACAATATTCAAGAAGTGAAATTCCTCTTATTTCTGACAATATT CATACTAACATTAAAAGGAAAATAGATCGGTCATACAAAGAGTTGGAAGCAAGGAGGACTAGACTCAGCCAGCTACAGAA AATGTACATGGATATGTCAATGAAGAAGGAGTTGCAGAAAAACGGTAGGAAGCGCAAACTACGCGAAGATGAGATTGTCT CTCCAACCACTGAGCCAGTTTACAAGTGGCGTGCTGAAAGAAAGCGTTAA
Protein sequence (LotjaGi6g1v0229900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQDEFYFKMIRTRTEDGVHRPE SEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASLHSIDNQPTNKHILFAEDREEAKELQSQYSRSEIPLISDNI HTNIKRKIDRSYKELEARRTRLSQLQKMYMDMSMKKELQKNGRKRKLREDEIVSPTTEPVYKWRAERKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PIRSF | 1 | 229 | 229 | 2.7E-66 | ||
| PANTHER | 1 | 229 | 229 | 4.9E-87 | ||
| MobiDBLite | 8 | 29 | 22 | - | – | |
| Pfam | 10 | 229 | 220 | 5.6E-63 | ||
| Coils | 103 | 126 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of LotjaGi6g1v0229900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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