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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0233800 |
| Transcript ID | LotjaGi6g1v0233800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat (LRR) family protein; TAIR: AT2G19330.1 plant intracellular ras group-related LRR 6; Swiss-Prot: sp|O64566|PIRL6_ARATH Plant intracellular Ras-group-related LRR protein 6; TrEMBL-Plants: tr|I1MH53|I1MH53_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0233800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54306266..54311481) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCCTCTATATAAATAAATATCTAACTCCTTCTCTTCTCTCATTCTTCACAACCCTTCCTATCTCTCTCTCTTTCTCT CTTTCTTATCAGGTATATTGTTTACAACTCCTTATCAATTATCTATGATGGTGCAACAGTTTCATCATCAACATCAACTA ACGGTGAAGATGGATACCATGTTGATGAGGAAGAAGGAGAAGGAGAAATCAGAGAAGAACAAAACCACCAACATGGAGAA AGAGAAGCTTCAATTTCAAATACTGGACTTGAGTTGCTTGTCCTTGAGCTCTCTTCCTAAACCTTCACTTGATTTAGCTA CCATTAGCAAATTGGACCTGTCTAATAACAATCTTCAGGTATGTTCGTACGTTCACATATGTAACTATCGTTTTATCGAA AAATATCTGATTTATAAATTAAAAGAGTTTCTCTATAAATTAATATATAAAAAATCATTTGACTCTTAATTTCAGGAAAT ACCGGAGTCGTTAACAGCGAGATTGCTGAACTTGGAGGAGTTGGACGTGCGCTCCAATCAACTCACATCTCTTCCCAACT CCATTGGCTGCCTCTCAAAGCTCAAGCTCTTGAATGTTTCTGGCAACTTCATTGAATCCCTCCCCAAAACCATTGAGAAT TGCAGGTTCAATTTCTTTACTTCTTGTCCTTTTCTATTTCTCATGACAAAATATTGCACCCATGTTTTTCAATTCCACAC CTCTTTTCTATTATATCATCCTAGATCCCTAATTTCGCTCTCGTCCATTTTTCCTTTCGATCTCTATATATTCTCCTTTC TACATCTCTTTTTGGGTTGTGGAGAACTTTTCACATCATCAATAATAACTCTTCTTGAAGATGCTAAGATTCTTAGATCA GTGGATAGCTGCTTTGGACTTCCTTTTATTTTCTTTTGGCATGTGATGACTTCAAACCAAGTTGATGATTAGTGTGTTAT CTTATTTAACCAATAAAGCCATATTAGTTGACATTGATTAGGAGAACCACTTCACTAGAGATGAAATTAACAGTTATAAG AAAGATGATTCATCTCTATGTTGCAAACCAAAGTTTAATTGTCTACCTATTTTGTGTATATATCTTAGATGTTGACTTGT TTTATTACCCCTTTTTTTATAAAAAAAATCATTAAAAAAAATGAAAGGTGCTTTGTTTAATTATTATGAAAAATGATTAG ATACAAAGTGATCATAAAAATATTCACAATGAGTTGGTATTTACCTATCAAATGAGTAAGTCCTTTCCCAACAAATATTC CTCATATCAATTTGGGTAGGTGTATATATTTATTATATTTTATAATTAAAATTTTTGAATAATTTGTAATACTTTTTTTT TATTTGTACTGTGTTTTTAAATATATTTTAATTGAATAATATGTTATATTTTTAATTAATATTTATGTTATTTTTTCCTA ATACTATTAAGTTATAACATCATGTTTTATATTTGAAAAAAATCATGTTTTAACATTTTATCTATATAATAAATCTATTA TGGGATTAGCATATTCATATTATTAGAAATTCAGGTAATGTAACTGTTTAAATGTCTCATAAAAATTTGGGTTAAATAAC TCATCGTTTAATCATATTGAAGATAAATTAGTTAAAATTTCTATATTTTATTTATTAATTTTTATTTATTAACAATCATA TTGTTTCATTGAATTTTGGATTAGTAATTCACACGAGTTTAAACGACCTTATCTAAAAGTACAAAGGAAAAATACTATAT TACCATATATCTAAATCTAATTCATTGTCATCTTTGATTTGATGCCAAAGAATTCTTATTATAATTTATTTTCTTTATAC TAACTCTGTAATCTGTTTTCATTTTCTTTTTAGCAAAAATAAGTATGGGTAAAAAAATATGGATTTAGTTGTAGTCTATT AGTATGATGATGAAATTTGTGAAGTGACATTTCTGTTATTGATTTTTCTCTTGCCATGGAATTACGGCATCAAATCCCGT GTACGATAGTCAACAATCCAACATCATATGTACTTTTAATATGTACTTTTAACTTTAGCATGGAAAGCTTGACAATTACA AGAAGGGAATTGACATTTTTATATAAAAATCCTTATTACATTAAATATTATATATGTTTTTAATTAAAGTATTAAATAAG CATACTTTTAGTGAAAATAATAAATATTTACGATAGGAATAAAATGTTTACATGACAAACTATATATTAATTACAGTATA ATACGAATATACATAAACAGTTGGGGATGACAATTTTGCCCAAACTCATGGGTACTCGCCCGAACCCGATTCGATTTGAC GGACAAAATCCGATTTGATTGGATTTGGGTTTGGGTTTGGGTTTGAGTTTTGCCCGTTACAGTAGCCATTTATGGGTTTG AGTTTGGTATTAGTTAAATCCGTGTCCATACCCGCCCAAACTCAAACCCAAAGATACTCGAAACATAAAATTACAAAAAA ACTCACATACATATATATATTTATAAACTTTGTTCTTAGTGTTTGATGATTAATTGTACTTTTGTATGTTTGAGAAAGTA AACTCTAAACTATTGTTGTCTCACTTTAGTGATGGATGAGGATGATAAATAGTATTTGTTTTTTTTTTTTCTTTCTATGA ATTTTACTTTTTTTTATATGAAAGTAAGTTCTGGATTGAGTTGCTACGTAACTAATGAGTTTGAGTTTCGGGTAAATCTG AAACCCAATGGATTTGGGCATGAATTTCATTTTATCGCCCATAAGGTTTGTGTTTGGGTTTGGGTTTGGGTTCTAAGATT TGGGTTTGGTAATTGTAAAACCCGTGCCTGATCCTACCCGTTGTCATCCCTATAAACAGTTGGTAATTTTTTTAATTTGT TTGTCAAGAGAAAGGTTACACGTGCTTAATACTACCTCCGGTCCTATTTATAAGCAACAAAAAAAAATTCACATAGCTTA AGAAATGTAGTTAAACTAGATAAATGCATTAAATTTGTCTTAAATCAAAATAAGCTTCCAAAATTACCCTTTGTTATTAG TGTTGGAAAGTGGGAAAGTGGGAAACTCCCTCCGTGTCCAAAATGAGGCATGGTTTCCTTAATCTGTCTCCTTGGAGGTG GTGGGTGGTGGGCTCTAGTAGTAGGATCTTTGTTGTTACCTTGTAATTTTTTTAATTTTCTTTCGTCTTATTTTCTACTA CTTGTATTGGGTTTAAGTACTCCTTGTGCTTCATTTCAATATAACATATTACTTATAAAAAAAATAAGAAGGGAGGGAGT AGTATCAAATATCAAGTTGTGTCAATCCGTAATCATTAAATTGTTCTTCCTTTTTTTCCTATAAGAATGAAGAATCAGCT CAGCTTAATCAATACGATAAGAGGAAATTAAACTGAGATACCACAAATTAAATTGAGATAACAGTTTGAACAGTTCCTCC CTGCTCTATTTGTCATTAAAGTTTGCTTGTATATCAAACAAAATTGAAGGTGCATGGATGTAAATGCGTATTAAAGTCCT TGATATTTTAGTTGAAAATTCAGAGACTTAAACAAAGACTCTGACTCTAGGAGGCTAGATGGTCCCAATTTCAATTTTTT ACCGACGAATGATTTAGTTGATTTAAGTGGTACATACTTTATTTTTTTAAGTAGTGTATCGTGTCTAAGTCTTATGAATT GCAAAATAAATAAATAAAACTTTATTGAAAAAGTTAACCCACTAAAATGTGAATGTGTCTAATTTCAACATGAATGTTTT ATCTCATAAAAATGAAAAATCCAACAATCGATATTTATCTTTAATTTAATTTCATGTATATTGTACGCTTAACTCATAAA AATCCAACTATAGATACATACAGTCCTAATAGTTAATACTTCCTCATCTTGTTCATATTGATTAGACGGTTCATTCTTTT TAACATGAATGAGTGCTAACTATGAATTTTGACCCACCAGTGCCTTAGAAGAACTGAATGCCAATTTCAACAAGTTGAGC AAGCTGCCAGACACAATTGGGTTTGAGCTCATAAACCTCAAGAAGCTCGCAGTCAATTCCAACAAGTTGGTGCTCCTTCC AAGCTCTACCTCTCACCTAACAGCTCTAACGGTTCTCGACGCACGCCTGAACTGTCTCAGAGCTCTCCCCGAAAACCTTG AGAATCTCATCAACCTAGAGACCCTCAATGTGAGTCAGAACTTCCGGTACCTGGACACACTCCCCTACTCCATAGGGCTC CTCCTGTCCCTGGTTGAACTGGATGTTAGCTACAACAATATCAAGACCTTGCCTGACTCCATTGGGTGCCTCATGAAGCT CCAAAAGCTAAGTGTGGAAGGAAACCCACTTGTTTCACCTCCAATGGAAGTGGTGGAGCAGGGGCTACATGTGGTTAAGG AATTCATGTGCCATAAGATGAACTCAGAACATAAAATCCCAACCAAGAGGTCATGGATAAGGAAACTGGTTAAATTGGGG ACCTTCAATGGATACGAGAGAAGAGGGAAACGATCAGAACACAAAGGTATCGACATGCTTCAGTATCAACCCATCAATGG TCTTGCTACACCAGGCTTCTTGGGGAAGTTTTCACCTCTTCGCCTATTCTCACCCCGCCGTTCCTTCAGTCGAGAAGCAA CTGAATACTTCTGAAAATCCCTGTCTGTTGAAGAGTTTTACTCAGTGTGTTGAATTCTACAATCAAGCGTGTGATATATA GGAATGGGGACGATAGCTGGTTAGGTTGTATGTATCAGAATAGGAGAGTGCATGTATATGATTTGAAAATGGTTGAGTGG TTTGTGAAACTTTGTATGCCTATTTATATAAAGTATATTCAGATGTTAAATTAATAGCTGAAAACAAAATAAAATGGGCG AGTCTAGTTTTTTCTTTCCCCGGTTTCTTGATCAACAAGACTACAAAGTGGGTGCCTCATGAAACTTTGATGCGTTCATG CTCCTTTTTGGGACGCAGTGCTAATCTATAATCTATAATAGTATAATTGCAGCTTCAAGGTAATTGCTTTGAAACAGATC ATCATTGGCAATCGAACGAGAAAAACTCGAAGGTAACTGATTTGCGAGACTTCAAAGTGGTTAAATTCAATCGATACAAA ACAGCTCTTGCAAATATAATTTCTAAGGAGACGGGGGGATTTGGGTTGAGGGATTAATACCTAAATAGCAGTAAGATGAT TGGAAAGCAGTCACCA
CDS sequence (LotjaGi6g1v0233800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTGCAACAGTTTCATCATCAACATCAACTAACGGTGAAGATGGATACCATGTTGATGAGGAAGAAGGAGAAGGA GAAATCAGAGAAGAACAAAACCACCAACATGGAGAAAGAGAAGCTTCAATTTCAAATACTGGACTTGAGTTGCTTGTCCT TGAGCTCTCTTCCTAAACCTTCACTTGATTTAGCTACCATTAGCAAATTGGACCTGTCTAATAACAATCTTCAGGAAATA CCGGAGTCGTTAACAGCGAGATTGCTGAACTTGGAGGAGTTGGACGTGCGCTCCAATCAACTCACATCTCTTCCCAACTC CATTGGCTGCCTCTCAAAGCTCAAGCTCTTGAATGTTTCTGGCAACTTCATTGAATCCCTCCCCAAAACCATTGAGAATT GCAGTGCCTTAGAAGAACTGAATGCCAATTTCAACAAGTTGAGCAAGCTGCCAGACACAATTGGGTTTGAGCTCATAAAC CTCAAGAAGCTCGCAGTCAATTCCAACAAGTTGGTGCTCCTTCCAAGCTCTACCTCTCACCTAACAGCTCTAACGGTTCT CGACGCACGCCTGAACTGTCTCAGAGCTCTCCCCGAAAACCTTGAGAATCTCATCAACCTAGAGACCCTCAATGTGAGTC AGAACTTCCGGTACCTGGACACACTCCCCTACTCCATAGGGCTCCTCCTGTCCCTGGTTGAACTGGATGTTAGCTACAAC AATATCAAGACCTTGCCTGACTCCATTGGGTGCCTCATGAAGCTCCAAAAGCTAAGTGTGGAAGGAAACCCACTTGTTTC ACCTCCAATGGAAGTGGTGGAGCAGGGGCTACATGTGGTTAAGGAATTCATGTGCCATAAGATGAACTCAGAACATAAAA TCCCAACCAAGAGGTCATGGATAAGGAAACTGGTTAAATTGGGGACCTTCAATGGATACGAGAGAAGAGGGAAACGATCA GAACACAAAGGTATCGACATGCTTCAGTATCAACCCATCAATGGTCTTGCTACACCAGGCTTCTTGGGGAAGTTTTCACC TCTTCGCCTATTCTCACCCCGCCGTTCCTTCAGTCGAGAAGCAACTGAATACTTCTGA
Protein sequence (LotjaGi6g1v0233800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVQQFHHQHQLTVKMDTMLMRKKEKEKSEKNKTTNMEKEKLQFQILDLSCLSLSSLPKPSLDLATISKLDLSNNNLQEI PESLTARLLNLEELDVRSNQLTSLPNSIGCLSKLKLLNVSGNFIESLPKTIENCSALEELNANFNKLSKLPDTIGFELIN LKKLAVNSNKLVLLPSSTSHLTALTVLDARLNCLRALPENLENLINLETLNVSQNFRYLDTLPYSIGLLLSLVELDVSYN NIKTLPDSIGCLMKLQKLSVEGNPLVSPPMEVVEQGLHVVKEFMCHKMNSEHKIPTKRSWIRKLVKLGTFNGYERRGKRS EHKGIDMLQYQPINGLATPGFLGKFSPLRLFSPRRSFSREATEYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 358 | 356 | 1.1E-191 | – | |
| PANTHER | 3 | 358 | 356 | 1.1E-191 | – | |
| Gene3D | 4 | 320 | 317 | 8.1E-52 | ||
| SUPERFAMILY | 45 | 286 | 242 | 1.56E-42 | – | |
| SMART | 64 | 83 | 20 | 19.0 | – | |
| SMART | 64 | 87 | 24 | 7.9 | ||
| ProSiteProfiles | 66 | 87 | 22 | 7.25 | ||
| Pfam | 67 | 122 | 56 | 3.0E-10 | ||
| SMART | 88 | 107 | 20 | 5.3 | – | |
| SMART | 88 | 110 | 23 | 0.47 | ||
| ProSiteProfiles | 90 | 111 | 22 | 8.32 | ||
| SMART | 111 | 134 | 24 | 1.4 | ||
| SMART | 111 | 130 | 20 | 4.8 | – | |
| ProSiteProfiles | 113 | 134 | 22 | 6.742 | ||
| SMART | 134 | 153 | 20 | 0.52 | – | |
| SMART | 135 | 157 | 23 | 130.0 | ||
| ProSiteProfiles | 136 | 157 | 22 | 6.287 | ||
| SMART | 158 | 177 | 20 | 140.0 | – | |
| SMART | 158 | 180 | 23 | 41.0 | ||
| ProSiteProfiles | 160 | 181 | 22 | 5.54 | ||
| SMART | 181 | 204 | 24 | 11.0 | ||
| SMART | 181 | 200 | 20 | 87.0 | – | |
| ProSiteProfiles | 183 | 205 | 23 | 5.332 | ||
| ProSiteProfiles | 206 | 229 | 24 | 5.409 | ||
| SMART | 229 | 248 | 20 | 6.2 | – | |
| SMART | 229 | 252 | 24 | 0.14 | ||
| ProSiteProfiles | 231 | 252 | 22 | 7.92 | ||
| ProSiteProfiles | 254 | 275 | 22 | 4.593 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0233800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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