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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0236800 |
| Transcript ID | LotjaGi6g1v0236800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold shock protein; TAIR: AT4G36020.2 cold shock domain protein 1; Swiss-Prot: sp|O65639|CSP1_ARATH Cold shock protein 1; TrEMBL-Plants: tr|V7AVE5|V7AVE5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0236800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54672751..54673715) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATTAGGGTTTTGGTTTGTGTGTCTGTGAGAGGAAAATTGAGAAGATGAGCGGCTCAAGGGTTAGTGGTAAGGTGA AGTGGTTCAATGACCATAAGGGTTTCGGGTTCATCACCCCTGACGATGGCGGCGAAGATCTCTTCGTTCACCAGTCTGAG ATCAAATCCGATGGGTTTCGGAGCCTCGGTGAAGGAGAGCTAGTCGAGTTCATCGTCAATACCAATTCCGATGGTCGCGC TAAGGCTGTTGATGTGACCGGTCCCAATCAGGCACTTGTCCAGGGAACCCGCAGCGGCGGTGGAGGAGGCGGTGGATATG GCGGTGGTGGAAGAGGAGGCGGGGGTTATGGTGGAGGCGGCGAGTATGGCAGTGGATACGGTGGCAACGGAAGAGGAGGC GGTGGTTACGGTGGAGGCAACAGGTACGGTGGAGGCTTTGGATACGGTGGAAGGGGAGGCGGAAGAGGTGGAGGTGGCGG CGGTGCGTGTTACAGCTGTGGTGAAGAGGGTCACTTGGCTCGCGACTGCGGTAACGGTGGAGGCAAGTACGGAGGCGGCG GCGGTGGCGGTGGAAGCTGCTACACCTGTGGTAATTCTGGGCATTTCGCGAGAGATTGCCCTTCCAACACCCATTGATGC TTCTACTTTGTGCGTTGTATTTTTATTTTGAATCTTAATTTTATGTTTTAAGGTACTATTGCAGAGGGTTTTCACACTGG ATCTCCCTAGTCGTGATGACTCTTTTTGGGTTTTATGTTATCTTTAAGCGAGATAGGAGTGTGGGTGAGAGATTCTTGTT TTGGGTCGTTAAATGGCTGGATTGTGTGAATCCTTATATTATTGCTTTCTGTATGGAGAATCTGCTCATACCAATTTTTG CTATCATGGAACTTGTCATTTTGGTTGTCAATTTTTTTTTCGTGCAATGCAAAAATATTATATATTTTGCCCGTTGAAGC TCCTG
CDS sequence (LotjaGi6g1v0236800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGGCTCAAGGGTTAGTGGTAAGGTGAAGTGGTTCAATGACCATAAGGGTTTCGGGTTCATCACCCCTGACGATGG CGGCGAAGATCTCTTCGTTCACCAGTCTGAGATCAAATCCGATGGGTTTCGGAGCCTCGGTGAAGGAGAGCTAGTCGAGT TCATCGTCAATACCAATTCCGATGGTCGCGCTAAGGCTGTTGATGTGACCGGTCCCAATCAGGCACTTGTCCAGGGAACC CGCAGCGGCGGTGGAGGAGGCGGTGGATATGGCGGTGGTGGAAGAGGAGGCGGGGGTTATGGTGGAGGCGGCGAGTATGG CAGTGGATACGGTGGCAACGGAAGAGGAGGCGGTGGTTACGGTGGAGGCAACAGGTACGGTGGAGGCTTTGGATACGGTG GAAGGGGAGGCGGAAGAGGTGGAGGTGGCGGCGGTGCGTGTTACAGCTGTGGTGAAGAGGGTCACTTGGCTCGCGACTGC GGTAACGGTGGAGGCAAGTACGGAGGCGGCGGCGGTGGCGGTGGAAGCTGCTACACCTGTGGTAATTCTGGGCATTTCGC GAGAGATTGCCCTTCCAACACCCATTGA
Protein sequence (LotjaGi6g1v0236800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGSRVSGKVKWFNDHKGFGFITPDDGGEDLFVHQSEIKSDGFRSLGEGELVEFIVNTNSDGRAKAVDVTGPNQALVQGT RSGGGGGGGYGGGGRGGGGYGGGGEYGSGYGGNGRGGGGYGGGNRYGGGFGYGGRGGGRGGGGGGACYSCGEEGHLARDC GNGGGKYGGGGGGGGSCYTCGNSGHFARDCPSNTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 82 | 81 | 1.0E-29 | – | |
| PANTHER | 3 | 193 | 191 | 3.3E-61 | – | |
| ProSiteProfiles | 5 | 71 | 67 | 34.231 | – | |
| SUPERFAMILY | 5 | 71 | 67 | 1.74E-21 | ||
| CDD | 6 | 71 | 66 | 1.36231E-27 | ||
| Pfam | 7 | 71 | 65 | 1.3E-25 | ||
| SMART | 7 | 72 | 66 | 1.1E-24 | ||
| PRINTS | 8 | 23 | 16 | 1.1E-13 | ||
| ProSitePatterns | 19 | 38 | 20 | - | ||
| PRINTS | 29 | 38 | 10 | 1.1E-13 | ||
| PRINTS | 44 | 62 | 19 | 1.1E-13 | ||
| SUPERFAMILY | 137 | 193 | 57 | 3.26E-11 | ||
| Gene3D | 142 | 172 | 31 | 1.0E-5 | – | |
| SMART | 146 | 162 | 17 | 1.5E-4 | ||
| Pfam | 146 | 160 | 15 | 8.3E-7 | ||
| ProSiteProfiles | 147 | 160 | 14 | 11.054 | ||
| Gene3D | 173 | 195 | 23 | 7.3E-7 | – | |
| Pfam | 176 | 192 | 17 | 7.1E-8 | ||
| SMART | 176 | 192 | 17 | 5.2E-5 | ||
| ProSiteProfiles | 177 | 192 | 16 | 11.202 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0236800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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