Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0236900 |
| Transcript ID | LotjaGi6g1v0236900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G61680.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q84WM7|PPME1_ARATH Pectinesterase PPME1; TrEMBL-Plants: tr|A0A0B2RDH2|A0A0B2RDH2_GLYSO Pectinesterase; Found in the gene: LotjaGi6g1v0236900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54678557..54680542) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCAAGAACTGGAAACATGGCTTCAAAAACCAAAATTTGCATTATTCAAGTGGTTTTCATAGCTTTTCTCATAGCTG ATGTTGTTCGATGCGATGACAATGTGCCAGTTCCTGCAGATAAGGCTCAAATTGACAAATGGTTCAGTGAAAATGTTGGA CCCTTAGCTCAGAGGAAGGCTACCCTGGACCCTGCACTAGTGGCGGCGGAGGATGGTACTCCTAAGGTTGTGAAGGTTAA GCCAGATGGAAGCGGCGATTTCAAGACGATCACAGAGGCCATTAACAGCATTCCTATTGCGAACGCCAAGCGTGTGATTG TGTACATTGCAGGCGGAAATTATAATGAGAAAGTGAAAATTGATAGAGGAAAGCCATTTATTACCTTTTATGGAGAACCA GGGAACATGCCAAACTTGACATATGGGGGCACTGCAAAACAATATGGCACTCTTGACAGTGCTACATTGATCGTTGAATC GGATTACTTTGTGGCCACTAACATCATCTTCTCGGTACGTATTCAATAAAAAATCAAAACAAAAGCCAAATAACTGTGTG CATATTTAGAGATTCTTCTGCAATTGATTCTGAAGTCTAGAATCAATTCTTTCGAGAAGCTTACGTGTTTCAGAATTGAA TATAAGAAAAACAATTTAAGCAGATTCATATATATATGCCTTTTATTGACTTCTGATTTTGCTTTCTTGTTTAGAACTCT GCACCAAAACCTGATGGAAAGCAGGGCCAACAAGCCGTAGCATTGAGAATTACTGGTGACAAGGCAGCATTTTATAATTG CAAGTTTTTTGGATTCCAGGACACGGTGTGTGATGATAGGAATAAGCATTTTTTCAAAGATTGCTTAATTCAAGGCACCG TGGACTTTGTTTTTGGAAGTGGGAAGTCTCTATATTTGGTAATTGATATTAACTTTTTAGTGGACTTTATAATGTTTTTA ATCTTTTGAAGTGGTCGAAAGTGTTTCGATGAATTTTGCAAACTCTAAGCACTGAACCTTAAACCCTAAACTCTTACAAT CCATGCAGAGGTCTGAGCTGAGCGTGCTCGGCGATGGCCAGATGTCATTTATAGCAGCACAAGCAAGAAAAAACAATGTA GACGATGAAGGCTTCACATTTGTCCATTGCGACATCACCGGAACCGGGAATGGAACCTACTTGGCAAGAGCATGGATGTC TCATTCTAGAGTGATCTATGCTTACTGCAGTATGTCTGATGTTGTGAATGATGCCGGGTGGAGTGACACCATGAGCGCGG ACTATGGCGAGTATGTTTTATTCTTTGGATTGAAATCTTTTATCCGCAAATTGTGACTTAAAATTTTGACACAAAAATCA TATAATAGCATAATGTGACTAATAAATATCATTGTCTACAGTACTGTGTTTTTTGGAGAGTACAAGAACTCAGGACCTGG TGCAGATGTTAAGGGGCGACCCGAGTATGTGAAGCAGCTAAGTGATGCTGATGTCAAACCTTTCATTACGCTTGCTTCGA TTGAAGGTTCCAAATGGCTACTTCCTCCGCCAAAAGTCTAGTTGATCAATTACCACATCTAATTGTCTGTATGGTTTCCT CTATTTTATGAGAGGGTTTTCAATTACCATATTTAATTATCACATTCTTACTATATACTATATATATATATGGCAATAAT ATTGGTCATGCACCCTACATTTTGTTATAGTGGCAGTGAATTAGGAAAAGGCTCTGCTGATAAAGTTGTTGGTGCTGGTA ATTTATAATTGTTTTTAGTTTCAAGTTTCAACATTGTAATAATGAGGAGGTAATATACCATGTAAATTTCAATGAGGAAT GCACTATTTTATTTTCTTGTAAAGTCCAATCAATAAGTGTGTCCTAAATTAACTCTTATTTTGATACAAATGAAGCTTGT AGCATGTCCACTTATTGAATCGAGCAAAATTTACTGATATTAAACTTCTAATGCCAGAAGAATAAA
CDS sequence (LotjaGi6g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAAAACCAAAATTTGCATTATTCAAGTGGTTTTCATAGCTTTTCTCATAGCTGATGTTGTTCGATGCGATGA CAATGTGCCAGTTCCTGCAGATAAGGCTCAAATTGACAAATGGTTCAGTGAAAATGTTGGACCCTTAGCTCAGAGGAAGG CTACCCTGGACCCTGCACTAGTGGCGGCGGAGGATGGTACTCCTAAGGTTGTGAAGGTTAAGCCAGATGGAAGCGGCGAT TTCAAGACGATCACAGAGGCCATTAACAGCATTCCTATTGCGAACGCCAAGCGTGTGATTGTGTACATTGCAGGCGGAAA TTATAATGAGAAAGTGAAAATTGATAGAGGAAAGCCATTTATTACCTTTTATGGAGAACCAGGGAACATGCCAAACTTGA CATATGGGGGCACTGCAAAACAATATGGCACTCTTGACAGTGCTACATTGATCGTTGAATCGGATTACTTTGTGGCCACT AACATCATCTTCTCGAACTCTGCACCAAAACCTGATGGAAAGCAGGGCCAACAAGCCGTAGCATTGAGAATTACTGGTGA CAAGGCAGCATTTTATAATTGCAAGTTTTTTGGATTCCAGGACACGGTGTGTGATGATAGGAATAAGCATTTTTTCAAAG ATTGCTTAATTCAAGGCACCGTGGACTTTGTTTTTGGAAGTGGGAAGTCTCTATATTTGAGGTCTGAGCTGAGCGTGCTC GGCGATGGCCAGATGTCATTTATAGCAGCACAAGCAAGAAAAAACAATGTAGACGATGAAGGCTTCACATTTGTCCATTG CGACATCACCGGAACCGGGAATGGAACCTACTTGGCAAGAGCATGGATGTCTCATTCTAGAGTGATCTATGCTTACTGCA GTATGTCTGATGTTGTGAATGATGCCGGGTGGAGTGACACCATGAGCGCGGACTATGGCGATACTGTGTTTTTTGGAGAG TACAAGAACTCAGGACCTGGTGCAGATGTTAAGGGGCGACCCGAGTATGTGAAGCAGCTAAGTGATGCTGATGTCAAACC TTTCATTACGCTTGCTTCGATTGAAGGTTCCAAATGGCTACTTCCTCCGCCAAAAGTCTAG
Protein sequence (LotjaGi6g1v0236900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKTKICIIQVVFIAFLIADVVRCDDNVPVPADKAQIDKWFSENVGPLAQRKATLDPALVAAEDGTPKVVKVKPDGSGD FKTITEAINSIPIANAKRVIVYIAGGNYNEKVKIDRGKPFITFYGEPGNMPNLTYGGTAKQYGTLDSATLIVESDYFVAT NIIFSNSAPKPDGKQGQQAVALRITGDKAAFYNCKFFGFQDTVCDDRNKHFFKDCLIQGTVDFVFGSGKSLYLRSELSVL GDGQMSFIAAQARKNNVDDEGFTFVHCDITGTGNGTYLARAWMSHSRVIYAYCSMSDVVNDAGWSDTMSADYGDTVFFGE YKNSGPGADVKGRPEYVKQLSDADVKPFITLASIEGSKWLLPPPKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 9 | 365 | 357 | 3.2E-139 | – | |
| PANTHER | 9 | 365 | 357 | 3.2E-139 | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| Phobius | 26 | 366 | 341 | - | – | |
| Gene3D | 65 | 363 | 299 | 1.2E-90 | ||
| SUPERFAMILY | 68 | 360 | 293 | 1.61E-75 | ||
| Pfam | 71 | 348 | 278 | 9.9E-64 | ||
| ProSitePatterns | 217 | 226 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi6g1v0236900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…