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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0244200 |
| Transcript ID | LotjaGi6g1v0244200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase QRT3; TAIR: AT4G20040.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O49432|QRT3_ARATH Polygalacturonase QRT3; TrEMBL-Plants: tr|I1MGU8|I1MGU8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0244200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55689400..55694457) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGAGAAAACCAATTCAGTGGCCTAAAAGGAGGAGGAAGAGGGGAAAAGGAAGCTGTTACAATTTCCTTCAATCCCTC TCCCTCTGCCCCTGTCACTCTGTGTATTGAGAAACCATCAAAACAACATAGTTATGTTATCATCACTGCCTAAAACCATG ATTAGTTTCTCAATGATCTTAGCATTTCTCTTATCAATGGTGGTACAAGATTCAACTTGCCTCAGTGAAGAACACATAGA CCTGTCTCATTTCAGGAACAAACTTATAAGGCACAGAGTGGGAATTCCCTTGTCCCAAGCACCTTTTACATCAGCACCTT CACCTTCAGAGACAGCAAGGGTATGTTATGTTATGTTATGAGCACAATTGCAATGTTTCATTTTTTTTTTCCACCTTTTG TCTTTTTAAAATTTTCTGCCATGTTTTTGATAATGAAATCAAACAAAAATATCTTCATTTTTTTTTGCATGGTTTTGGTT TTGAATTAGAGAGGCAGAGTGGTGAACCCAATTGGGTATGGTGCAGATCCTACAGGGGCAGATGACAGCAGTGATGCTAT TCTGAAAGCTATAGCAGAAGGTTTTGCAATAGGGAGGAGTGATGAGTTTCATGAGCTGGTGGCAGGAGTGAGAGACCTTG GAGGGGTTGTGATTGATTTGCAAGGTGGAAACTACAAAATCAGCAAACCCATCACTTTTCCTTCCTATGTAGGCAATGTT GTGGTCAGCATCTCTTTCCCTCTTTTAACAATCCATTGCTTCTTTGATTTGATATTGCAACTTCTTTTTTCCTTTGCTGC AACTGAACAGTTTCTACATTACATTAATAAAATTAGTTCCATGCTTGTAAAAATGCTCGCCGCATTTGAATACCAGTTAG AAAATATGAAAACGGCAAAATAAACATATTCTAAGACATTTTTTTTATTGAATTCTGTTTAGATTTAGAAAATTTCTCTA GAATATTTTCTCTTTTTTCATTTAGCATGATGTAATGGCCTTTTTTTTAATTTTTGACGGATGTCGTCACCCGTTTAAAA AATAATTATATGTCTAGTTCCTTCTTAAATAATAAGTTTTCTTTAAAAAAACACCTTAGAATTATTTTTCCGTTTCATAT TTTCTAACATGTATATAAACAAGTCTTAAGTAAATTAAGAGAGTACATGGATTTGCGCTAAAGATTGAAATCACATATTT TCACCCTTTCTTTTTTCTATTTTCGAAAAAAGAAAGATGAAAAAAATTCAACGGGTTTACATTTTATGGAAAATGCTTTT CAATTTCTAAAATGTCTAATATGTGTTTTACATCTTCTACGCGAAAATGTTCAATTTTCATAAACTATATGGAAACAAGT TACATTGAAATGTGTTCTTTAACTTTGAATCTAGTCTATTTTTCTAACTAATGCCATTTTTTAGAGTCTAACATGGAAAC CTATTAAAAAGTATTTTTCATATTTAAACATTAAATAGGTTTACTTGCTAAATTTTATATAAGCTAACATATTTTAATAT GTTAGTAAATATTTAATTTTAAGATGTCATATTAAGAATGTTATTATTGAATGATCTAATTAAGCATGAGTGTTAATTAA ATAAAATTGACGTTTTGAAAACATGATTTGATTTATTTAATAACTAGGTTTGGAATGTAGGTTAGATTATAGGTTTTTAG TCCCTTGAGGAGCCATCTTACCTTATTTTCATCCCTAATTTTGTGTATTGATAATTCTAGTTGTGGGGTTGATGTATATA TTGATTTCAATTCATGATAGATGTGATATTAGTGAAAAAAAAATATGCAAACGATTAAATAAATTTTAAGAATAATTCTA TCACAAATGTTTTTAGTCCAATGTAAAATAATGGTCAATAGTAATTTGTAGATAACCGCAGTAAAAGCAACGCATAGAGC CGCATGCCAATTTGGCAAATCTCATGCATTGCACCTACATTTGTGTACTACAAACGTTTAGATGGATGAAGCCAAAACAG TGGTCAGGTTTTGATTTCTAACGTTACTAATAGAGAGTTTTTGTTAAATGAGTAACATTACTAACGTTTAGGTTACTTCA TTAACTGTTAAATAAACATTTTTGTTAAAAATCGAGAGAGAAAACCTTGGATACAATAAATAAGAGTTTAGTTTATATGA TTGTGTAAGGGAGTTTTGCTACCTTTCCAAAATGTGTAGTTTAAGATGATACACACAATTTAAAAGGTTATATATTGATA TATAACTCGCCTAAAATACCATTAATTAGATTACAGTCTTTTCCAATTTTTCACAACTTACTCACAACAAACTCATTAAT TAATAAAAGAGAAAGGTTTTATTCCATTCTAATGTGTATCCAAACATGTAATAAGAGTAGCTAAAGGGAGAAGTGATTCG GGAAGAATTAAAAGTGAGCTAAAGTAGTGCTTATTAGAATTTGAGTTAAACCTAACTCTACCCAAAAACTAGTTTAAGGT GACGATCACCTTCCGATATATGAGTTATCTTGGTCATTTCTTTAATCAATGAGATCTTCAACACACACTCCTCAAGGAGG ACATCTAGAGTGTGAGGTTTGCATGAATGAACATCTAGGTGACGAAAATATATGAATGGTCTCTAATAAGCAATCTAGAA TAGACTCCGGTGTCATATTAAAATTTGGATTGGGTGGGATGAAGGGTGAAGGGTTCAGGATTTGAACCTGAGGAGAACTA ATTTACTAACATTATTCTTGAACATTAATTTACTAACACTACTAACAACTAACATTTGCCTATAAAAAAATAATTTAAAA TTTCGGTAGGCCTAACTTAGAGATGATGATTATCTTTCCATGTATAAGAGTTATCTTAAGTTCTTGACCATATCTCTAGT AATGTGAGACTGGTCATTTCTTTGTATTAAAGACAGATAATATGATAATTTAATTATATTCATATATTAGATTGAACGTC TAACTATATAGTTCAAATTGACTTCTTTTGTACCATGATCAATGTTTTTTTCTTGGCAAGTTGCACTCCAATGCCCCTCA TCTTCTTGTACTAAAAAAATACATGAATGATCGATCAGGTACAAGGAGGAACCTTAAGAGCTTCTGATAAATTTCCTCCT GATCGCCATCTTGTTGAGTTATCAGCATCAAATTCCCATAACCTCCAAGAACCGGCAGCATCCATCCACCGCCATCATCA TCATGGTTTCAACAGCAAGAAACTTCAGCAAAACATAGGGATTTACTATGAAGACATAACATTTCGTGACATCTTCTTCG ATTCGAGCTACAGGGGAGGAGGGATCCTCATTGTTGATTCTGCTAGAGTAAGAATCACCAACTGCTTCTTCCTCCACTTC ACCACAGAAGGGATTCAAGTTCAACGCGGTCACGAGACCTACATATCAAGCACTTTCCTCGGGCAACACTCAACAGTTGG TGGAGATAAAGGGGAGAGAGAATTCTCAGGCACTGCCATTGATCTTGCTAGCAATGACAACGCAATCACTGATGTGTCAA TTTTCTCTGCTGCCATTGGGATTGTGTTAAGGGGACAAGCCAACATGATCACAGGGGTGCACTGTTACAACAAGGCAACA GCCTTTGGTGGCATTGGGATTTTGGTGAAATTAGCAGGGTATTCACAAACCAGAATTGACAATTGTTACATGGATTATAC AGGTATTGTCATGGAAGATCCTGTTCAAGTTCATGTTACCAATGGATTCTTCTTAGGGGGTGCTAATATTGTTTTGAAGT CCATTAAGGGAAAAGTTTCTGGTTTAAACATTGTAGATAACATGTTCAGTGGGAAGTGGAACCAGGTACCGATTGTTGCT CTTGATGGGCAATTCAGTAGCATTGACCAAGTGGTGATTGATAGGAACAATGTGTATGGTAGCATGAGTTTGAGATCAAC GGTTTCCAAGTTGACTGTGGCTGGAAATGGCTCAAAATGGGTGGCTGATTTTTCAAATGTTTTGGTGTTTCCTAATCGGA TTAGTCATTTTCAGTATTCATTTTACTCTCAGGGGGAGCCTAAGTTCTTGGCACATTCAGTGACCAATGTGTCAAATAAT GTTGTGGTGGTGGAAAGTGAGAAACAAGTTCAAGGGGTTGTTTCATTCTTTATTGAACAATGAGTTATTATGAGGGGGTT TTCAGCATTGTCTATCTATCTGATATGTAAAATTTTGTGATTCAGAAAGAAAGGAAAGTTAATATTCATTGAGCTAATCA CCAATCTTATATATGAATGACTTAAATTGAATAATTCCAAGTTCCTGACTCCCAAACTCTTTCTTCAGTTGACATATCTT TACACAACATGCACAAGCAATTTTATTACTGTGATCGCTACCAAAAAACCTTCACTAGAAAACAAGCTAATTAATTTGAC ATTTCAAAGAAGGAAAACAGGCACAAAGAAAACATGGCAGCACCAAATTATCAAGAGTCACCTGACCTTCCTAAGGAAGA AAAAATTCCTTTCCAACAAAAAAGTCTACTTCTCATAGAAAATCAACAACCAAATGCTAAATAACCAACGTTTACAATGC TATGTACAAAAAGTAAAAAATATCCAAACCATCTTGCATGCATGACTTATCTGGTATCTTAACACTTAATGATAGAAGTA TTCTGAATCCAGGAATATACAAGCATATTTGTTCCTTTAGTCGCTGTAGTATTCTACAGATTCATCATCGTATACGTCAT CATCATCATCCCACTCATCATAAAGTAGAGATTTAAGCTGCTGTGTCTTCAGTCGTTCTTGAATTCTGTCTCTAATTGCT GTTCCCTGGTGTATAAACCAATCAAATCAATCAGTCAGAAAGATTCACAGAAAAGCAATATCCCAGGAATTAAGAATAAG ATCACATGCAAAAGTTAGTGATTTGCATGTTAAGTTTATGTAACCAGAGGTAATAGAGATCCAACCATTTTGTGGCAGCC TTCTTCAAACATCTCAAGAAATCCAGCAACCAAGCGGTCCGCATTTTCTACCCATTCAGTACGGTTCATTCCAGCAATTT TTCCTACCGTTTCTATCT
CDS sequence (LotjaGi6g1v0244200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATCATCACTGCCTAAAACCATGATTAGTTTCTCAATGATCTTAGCATTTCTCTTATCAATGGTGGTACAAGATTC AACTTGCCTCAGTGAAGAACACATAGACCTGTCTCATTTCAGGAACAAACTTATAAGGCACAGAGTGGGAATTCCCTTGT CCCAAGCACCTTTTACATCAGCACCTTCACCTTCAGAGACAGCAAGGAGAGGCAGAGTGGTGAACCCAATTGGGTATGGT GCAGATCCTACAGGGGCAGATGACAGCAGTGATGCTATTCTGAAAGCTATAGCAGAAGGTTTTGCAATAGGGAGGAGTGA TGAGTTTCATGAGCTGGTGGCAGGAGTGAGAGACCTTGGAGGGGTTGTGATTGATTTGCAAGGTGGAAACTACAAAATCA GCAAACCCATCACTTTTCCTTCCTATGTAGGCAATGTTGTGGTACAAGGAGGAACCTTAAGAGCTTCTGATAAATTTCCT CCTGATCGCCATCTTGTTGAGTTATCAGCATCAAATTCCCATAACCTCCAAGAACCGGCAGCATCCATCCACCGCCATCA TCATCATGGTTTCAACAGCAAGAAACTTCAGCAAAACATAGGGATTTACTATGAAGACATAACATTTCGTGACATCTTCT TCGATTCGAGCTACAGGGGAGGAGGGATCCTCATTGTTGATTCTGCTAGAGTAAGAATCACCAACTGCTTCTTCCTCCAC TTCACCACAGAAGGGATTCAAGTTCAACGCGGTCACGAGACCTACATATCAAGCACTTTCCTCGGGCAACACTCAACAGT TGGTGGAGATAAAGGGGAGAGAGAATTCTCAGGCACTGCCATTGATCTTGCTAGCAATGACAACGCAATCACTGATGTGT CAATTTTCTCTGCTGCCATTGGGATTGTGTTAAGGGGACAAGCCAACATGATCACAGGGGTGCACTGTTACAACAAGGCA ACAGCCTTTGGTGGCATTGGGATTTTGGTGAAATTAGCAGGGTATTCACAAACCAGAATTGACAATTGTTACATGGATTA TACAGATAACATGTTCAGTGGGAAGTGGAACCAGGTACCGATTGTTGCTCTTGATGGGCAATTCAGTAGCATTGACCAAG TGGTGATTGATAGGAACAATGTGTATGGTAGCATGAGTTTGAGATCAACGGTTTCCAAGTTGACTGTGGCTGGAAATGGC TCAAAATGGGTGGCTGATTTTTCAAATGTTTTGGTGTTTCCTAATCGGATTAGTCATTTTCAGTATTCATTTTACTCTCA GGGGGAGCCTAAGTTCTTGGCACATTCAGTGACCAATGTGTCAAATAATGTTGTGGTGGTGGAAAGTGAGAAACAAGTTC AAGGGGTTGTTTCATTCTTTATTGAACAATGA
Protein sequence (LotjaGi6g1v0244200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSSLPKTMISFSMILAFLLSMVVQDSTCLSEEHIDLSHFRNKLIRHRVGIPLSQAPFTSAPSPSETARRGRVVNPIGYG ADPTGADDSSDAILKAIAEGFAIGRSDEFHELVAGVRDLGGVVIDLQGGNYKISKPITFPSYVGNVVVQGGTLRASDKFP PDRHLVELSASNSHNLQEPAASIHRHHHHGFNSKKLQQNIGIYYEDITFRDIFFDSSYRGGGILIVDSARVRITNCFFLH FTTEGIQVQRGHETYISSTFLGQHSTVGGDKGEREFSGTAIDLASNDNAITDVSIFSAAIGIVLRGQANMITGVHCYNKA TAFGGIGILVKLAGYSQTRIDNCYMDYTDNMFSGKWNQVPIVALDGQFSSIDQVVIDRNNVYGSMSLRSTVSKLTVAGNG SKWVADFSNVLVFPNRISHFQYSFYSQGEPKFLAHSVTNVSNNVVVVESEKQVQGVVSFFIEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| PANTHER | 13 | 348 | 336 | 1.4E-199 | ||
| PANTHER | 13 | 348 | 336 | 1.4E-199 | – | |
| SUPERFAMILY | 16 | 425 | 410 | 5.03E-18 | ||
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 463 | 438 | - | – | |
| Gene3D | 74 | 458 | 385 | 4.4E-21 | ||
| PANTHER | 349 | 463 | 115 | 1.4E-199 | – | |
| PANTHER | 349 | 463 | 115 | 1.4E-199 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. |
Expression pattern of LotjaGi6g1v0244200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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