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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0247500 |
| Transcript ID | LotjaGi6g1v0247500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase NEP1; TAIR: AT3G57000.1 nucleolar essential protein-like protein; Swiss-Prot: sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1; TrEMBL-Plants: tr|I3TAC5|I3TAC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0247500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55970466..55974437) extracted from Lotus japonicus Gifu genome v1.2.
CACTTGTAATTTTATATTTGTAATTTATTATAACTTTAATTTGTCTTTTACAATAAAGTCCTTTAATGATTTTGTCCCTA AACCTTCTCAGACCACCTCTTCACCAGCAAACTCCCACCTCCAGCACCTCACGCGTGACCTCTGTCTCCGGCCATCAGAT CCGGTTCACTTTGACTCCAACCGACACCTCTGAATGATATCGTCGCCATGGAGGTCCAATCTCGGTTTCTCTCTCAACCA CTTCACTGACGAACTGCCGCCATCTTCGGCAAACCTGTGAGGGAAGAGGGAGAGACGGAGGTCCACACAGCACGACCGAC ATGACCCATACCCAATAGATCTTGACTCCCAGACCTGTTGGAATATTTGATATTTCAGACCCAACAAATCTTATGTGTTT TGAGGGTGGCGGAATCCGTGAAATTTTATCAAATAAAGGTTGAGCCTCTGACTTGCAACAGAACATTTGGGAGCTGATCG GAGAGGGTGGTTCGAAGGTGCGTTGGGCTCCGGCGGCATGGTGGGGTGAGAGGGGTAGAGATTGGAAAGGGTTATTTTTG TAAACTTCTTTCTTATTTTATTTTTCAATTTTTTTACAGCAGGTATGCAAACCTATTATAGTAGGTAATTTCCCCTCTTT AATGGTGCAAGACCCACTCTGTACTTGCACCCCCTATTTTATTTTTATTTTATTTTATTATTGAAAAAGACAAAATCTGA CTAGTGTAATTTTGAATAAAATAAAATAATTGTGTCGTGTGGCCCAGTGGGTTTATGTGGTTGAGGGTTTATAATTGTGT TTTTGTGGTTTCCAGAGGTTGTCTTCCATCCGCCGCCGTAACCGCAGTCTCCGTCGTTTTCTTCTCTTCCTCTTCGTCGG AGGTATGATATCTATCTTCCCCTGTTCTCATTGATTTGGTTTGCTTTATTGCTGCTTAGGGAGAGGGATTTTATTGTTTG AATTGCTGTTGCAAGTTGCTTTCTCATTTGTTTTTGTGTGGGAAAATCTCATTTGTAGTATTTCTCTTCATCAACCTTGT TCAAGTTTAATACAGTTCAGAACAACTATTTCTACAACTCATTTATTTTTGTACTTGAAATTTCAATTTCAATTTTAAAC AATAAATATATTATACAGCTTTAATTTGATAGGAATTTCATTTTTAAACAAAGTTATATTACATAAATATTTATTTTTTG TTTAGATTAAAGCCCACCAATTAACCTAGCACAACTGAACCCTAAGACAAGACAACTATTGTGTTCAGTTGTGGTTGAGG GAAGCCATGACACGACCTTTTGGTATGAAGGGGCGGAAGAGAAAGGACAAGGAAGCTAAATATGATCGCGAAGAAGATGA AGACGAACAAGTGCAACCTAAGAGACCTATGCTCCAAAATGCTGAAGTAGCTGCAGCAAATGAGGAGGATGAACTTGTAG GTATCCCAATTATGCCTAGTGACCACAAGAGTGACAACCCTAATGTCATATTCATTCTTGAAAGGGCTTCTTTGGAAGTC GCCAAGGTTGGCAAGGTAATTTCCTCCTAATCTTCAATTTGGTGATTTCATTTGTGCTTCCTTCCTATTATATTACACAA AAAATGTTGAAGCTTTGTTATTATGAGTTATGGCTTTGTTCATTGCATTCTTAAGATTTTTTTTCTTTGCTGAGTGCTGG CTGACCGCCTTTGATTGCTGTTGAATTTGCAGACTTATCAGCTTTTGAACTCGGATGACCATGCCAATTTCCTCCGCAAA AATAACAAGAATCCTGGTGATTATAGGCCTGACATTACTCATCAGGTTGGTCCAACTTGCTAAAATGGACATGTTTTGGT CTTCATCATCATCCCTCTCAAATCTAATTTTCTTTTTAATAAAAAACTCATCATTCGTATTACTTCTTCTTTCCATTATT GAGTTTAAGGTTATGCTGCTTGGTTGGTGTTATAAAAGTTGGGCTCAAAAATACAATATACTCAAAATTTATTGTGTGCC CTAAATCTAAGTACATTGTCATGTACTCATGTTTATTGGAGTAGTTTATTTGGTTTAGCTCCACTGAGTGTGAACTAAGA GATTTACTTTGGAGAAGAAAAGGAGTTTAGCCATGAATTGAAGTTGGTTAATTTAGCTTTATAATTGTTTTGTGTGTACA TGCATATGATTTTCCAATACATGGTTATAATTCTTCACTCTTCGTTCTAGAGTAAATCCCCAGAGGAGCTAAATTTGCTT TCCCCCCTTTCAACTACAGTAATAGTCTTGAATTCTTTTTTTTTTTGCAATTTAAAATCCCATTTTATAATTTTCACGAA CCATTTTATATTATATTTCTCACGCACCCTCACACAAGAGCCATTTGGGCTTGAGCGTGGACATTGCACAACCACACTTC ATGCTAAAATTGAACTTTTTATTAGAAGAATTGAGTCAACGAGGATCGAACTCGGTTACAGACATGTTAGGCGACAACTA TCTTCGAAGCTTAAGTGGTGGGATTAAGACTTAAATGGTTTTATATTATGTTTTTAACAATATCCAATGATATTTTCAGG CCCTTCTATCTATTTTAGATAGCCCACTAAATAAAGCTGGGAGGTTGCAGGCAGTATACATAAAGACTGAAAAAGGTGTT CTTATAGAGGTTAAGCCCTATGTTCGTATTCCAAGAACATTCAAACGGTTCTCTGGTGTCATGTGTAAGTTTTAGTTAGC TGTTTGATTTCCTAGGCTTTAAGCACTATTACCTCATGTGCGCCTGCCTACTTCCTTCAACCTCTCATTTGTTGCTCCTA AACTTTACCCTGCAGTACAACTGCTTCAAAAATTGAGCATATCTGCTGCTGGCAAGCATGAGAAACTTCTCCGCACAATA AAAAACCCTGTGACTCAGTATCTGCCTGTCAACTCACGAAAAATAGGTGAGTTTTTTTTTTCTAATGTTTTGAAAATGAT TTCATGGTTACATGATTCTTTTAAAGTTTGTTACAAGGATCTGTGAATCTTGATGGTCACTTATGTGTTTCAGTTCATGA TAAATTCTTTTATAAAAATATTACTAAGAGAAGAAGTAATTGCTCTCCTTGGTTGTTAGGTCTTTCATTCAGTTCAGAAA AGCTCGTAAATATGAATGACTACGTATCAACTGTTCCAAGCGATATGAACCTTGTCTTTGTGGTATTCTCACAAGTTCCC AACTTTCAAATTATATTATTGTTATCTCGGTACATGTTTAACTTTTGGTAATCTAATTTAAGGTAGGAGCAATGGCCCAT GGGAAGGTTGAGACGGATTACACAGAGGACTATATAGCAGGTAGAGTTTATCCATATACACTTTCGCCTTAAATTTTGTT GTGAATTCTAAATACATTTTACGTTAATGGTAAAACTACCTCAGATAATTACTTCAACCGTCAGTATATTTTAGTTTCTT ACTTCGTTGTTTTTCCTGATGCAGTTTCTGGGTACCCTCTAAGTGCTGCTTACTGTATTACAAGGATTTGCAACGCCCTT GAGGCAAAGTGGAAGATATTGTGATTTAGATTCTTCAGTTCATGCCTGAGATACATTTTTCTAGTTTCAGCAGTATATTC ATGTAATAACAGGGATAGGCAGGCGGCCTAGCAGTGATGTGGGAAATCAATTTCAAGATTAGTTAACTGTGAGGTTTTTT GAGGGCATGCTTGATATATTGGACCAGAATGGTGCTTTTAAAGTTTATTGATTGTCAATGCTGTATTTGAATTAATCATA CCTTCCACCTTGATACATTACAAGGGGATATGCTGAACAGGGTTTAATCTGTATTATGTTCACTGAACTAATACACGGTT CTAGATATTTGATGGGATTGATGTTGAAATAATTTATTTTAAAATCATTTAGGTTGAAAAATTGATTTGTATTTTAAAAT GTTATCTTAAATTTCAAAGTATTGGTCCAATGCAATATTTACTATTTTTGAA
CDS sequence (LotjaGi6g1v0247500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTTGAGGGTTTATAATTGTGTTTTTGTGGTTTCCAGAGGTTGTCTTCCATCCGCCGCCGTAACCGCAGTCTCCGT CGTTTTCTTCTCTTCCTCTTCGTCGGAGTTGTGGTTGAGGGAAGCCATGACACGACCTTTTGGTATGAAGGGGCGGAAGA GAAAGGACAAGGAAGCTAAATATGATCGCGAAGAAGATGAAGACGAACAAGTGCAACCTAAGAGACCTATGCTCCAAAAT GCTGAAGTAGCTGCAGCAAATGAGGAGGATGAACTTGTAGGTATCCCAATTATGCCTAGTGACCACAAGAGTGACAACCC TAATGTCATATTCATTCTTGAAAGGGCTTCTTTGGAAGTCGCCAAGGTTGGCAAGACTTATCAGCTTTTGAACTCGGATG ACCATGCCAATTTCCTCCGCAAAAATAACAAGAATCCTGGTGATTATAGGCCTGACATTACTCATCAGGCCCTTCTATCT ATTTTAGATAGCCCACTAAATAAAGCTGGGAGGTTGCAGGCAGTATACATAAAGACTGAAAAAGGTGTTCTTATAGAGGT TAAGCCCTATGTTCGTATTCCAAGAACATTCAAACGGTTCTCTGGTGTCATGTTACAACTGCTTCAAAAATTGAGCATAT CTGCTGCTGGCAAGCATGAGAAACTTCTCCGCACAATAAAAAACCCTGTGACTCAGTATCTGCCTGTCAACTCACGAAAA ATAGGTCTTTCATTCAGTTCAGAAAAGCTCGTAAATATGAATGACTACGTATCAACTGTTCCAAGCGATATGAACCTTGT CTTTGTGGTAGGAGCAATGGCCCATGGGAAGGTTGAGACGGATTACACAGAGGACTATATAGCAGTTTCTGGGTACCCTC TAAGTGCTGCTTACTGTATTACAAGGATTTGCAACGCCCTTGAGGCAAAGTGGAAGATATTGTGA
Protein sequence (LotjaGi6g1v0247500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWLRVYNCVFVVSRGCLPSAAVTAVSVVFFSSSSSELWLREAMTRPFGMKGRKRKDKEAKYDREEDEDEQVQPKRPMLQN AEVAAANEEDELVGIPIMPSDHKSDNPNVIFILERASLEVAKVGKTYQLLNSDDHANFLRKNNKNPGDYRPDITHQALLS ILDSPLNKAGRLQAVYIKTEKGVLIEVKPYVRIPRTFKRFSGVMLQLLQKLSISAAGKHEKLLRTIKNPVTQYLPVNSRK IGLSFSSEKLVNMNDYVSTVPSDMNLVFVVGAMAHGKVETDYTEDYIAVSGYPLSAAYCITRICNALEAKWKIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 39 | 20 | - | – | |
| Phobius | 40 | 314 | 275 | - | – | |
| MobiDBLite | 49 | 74 | 26 | - | – | |
| MobiDBLite | 49 | 73 | 25 | - | – | |
| PANTHER | 95 | 312 | 218 | 9.5E-109 | ||
| SUPERFAMILY | 98 | 313 | 216 | 1.96E-76 | ||
| Gene3D | 109 | 314 | 206 | 2.0E-87 | ||
| CDD | 109 | 308 | 200 | 7.86159E-111 | – | |
| Pfam | 112 | 308 | 197 | 2.8E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi6g1v0247500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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