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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0248400 |
| Transcript ID | LotjaGi6g1v0248400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|G7IKD2|G7IKD2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi6g1v0248400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56047850..56051769) extracted from Lotus japonicus Gifu genome v1.2.
TGGATTAATCAAATTGCAGTCCTACTCTCGCGTACCAAAAGGCCAAAACTATCATTTGAAATTCAAGTTAATGTTCTTAT TAAGAAGCAAAATAGGATTTACCCTTTCTATTTGCAAGTACATATAAATAAATTTTGCTGCAACCGCATCTTTATTCATC GAAATGGCGACACGGCAGCGGTTACTACCGTCCTCTTCCGACGACTCACTCCACGCGCCGCCGCTTCCACCTCTTCCGTT CGACCTTGGTGTGGAAATCCTATGCAGGCTCTCGGTGAAATCGCTGTTGCAACTCCGCTGCGTTTGTAAGTCCTGGAAAA CCCTAATCTCTGATCCCAAATTCGCCAAACACCACCTCCTCCGCTCTTCCCCGACGGACTTCACCCGCCACCGCCTCATC TTAGGCTACAACATCCTCCCAAACGACAGATTCAAATTCCTTCTCAAGGATTACCCGCTCCTCTCCGTTTTCAATGCCGC CATGCCTGCACCCGCCACAGAGCTAGGTTACCCTCTTCGTGACAACTTCAATTTGATCATGGACTCTTGCGACGGCATCG TCCTCGTCTGCGCCAATTACAAGAGATGTATTGTTCTATGGAACCCTTCCACTCGGAGATTCAAAGAGTTGCCGCGTTTG GAAATTCCAGAGTCAGAAGTAGAAGGTGCTAGTACTTTCATAACATATGGGTTTGGTTATGATAATCTTGCTGATAGTTA CAAAGTAGTTGCAGTTTTCTACTATGAAACTGATACTGGGGGTTACAGAAAAAACAAAACTAATTTTGAGTTTTACAAAA CACAAGTGAAGGTTCATACTTTAGGTACTCATTCTTGGAGGGAGATTCAAGAGTTTCCTTCTTGTGTCCCTTTTACTGGA GCAGGAAGATTTGTGAGTGGCACTGTTAATTGGTTGGTTTCTGATGAGTCCAACTGGTTTATTAATTCTCTTGATTTGGG GAAGGAGAGTTATCAAAAACTTTTGCCTCCTAATGATGGAAGTGAGCCTGAGAATTATTTGGGGGTGTTGAGGGATTGCT TGTGCGTCCTGTGTGGAGATTCTAAGGTTTGGAATGTTTGGCTTATGATGGAGTATGGAAATCAAAAGTCTTGGACTAAA CTATTCAGTGTTGCCACCGAACTATTCCCCTATTACAAGGGACAGGGACTTGGTGCAATTCATATTTCTGAGGATGATCA AGTACTGGTGGTGCAGTTCTGTTCAGAGTTATTTCTTTACAATTCCAAAGACGGCACTTTGAAAAGTCTCCAAATACAAA TTCCCGATGCTTGTATTTCTATGGTCTCATGGGTCTATGTAGAAAGTTTGGTATCACCTTGCTTTTGATATTAGGACGCA AAATGGTATGTTTTCAATCCATTAAATGGACCTTTCTTTCTAATTACTTTTGATCATTGTTTATTGAAATCATGCATTTC ATTAGGTGGTCAATTTAGTTTTCTAAAATTAGAATAGGATCTAGATGTGATGCCAACTCACTAGTATGCTTATTTAAATG TCACTTAACTGCTCACAAATTTCATGTTTGCTTCAAATCCTGCATAATACATTATGCACTAAACAAACTAAATCTTATCA TGCACATAGTTCTTAATCAGCCTATCATTTACTTTTTTTCCCTTTTTGGGCATAAATTCATAATAATAGCACAAGAACTT GTTTTGATGTTTTTGAATCACTAAAATAGACATACACCTTTCAGTTGATTGAAAAATCTTTTACTGTGGTAGCATATTTT CCTCAATAATTTAGACTGCACAAGTTCAATAATTCAATAATTTTACACAAAAAATTCCCTTTCTTCATGTCATCTTCTTG TGTAGCTTATTATATCCCTTTTCCAGAAATACTACACAAATATCTACCTCCTGAGGTACTTGTTTGCACTTTGTCATAAC TAGTAACTGACTAGGAGCTTCTGTTCTGACTTTTCAAGTATTTTTCAGGTGGGACAGTGGGAACTTATTTCTTAAGTATA TTTTTTGTGATGACCAAGAGTAGTGGAAGATGTGAAAGCAATGAAGCTGATCCCAGCTGGGGCGACACAAAGTGAATTAT ATGTTTTTATATTGTCATATCAAAGCAGTTGACAAATGCCAGTTATCCTATTTCTCTTCAATACTAGTTAAGGATCCTTA AATGCCTTTTGTTTGAAACTATAAGTTTTCTTCCATTTATAACTTAGATTGCTTTATTTGGTATCTGGAAATGATTTAAT GAGAGGGGATTATGGATTGATCGACAGACCAATGGCCTGCATTAGCAGTGCATTGTATAGTTAATGATAGCCTTCATAGC AATTACCATCTGATTAGAACATAATCTGCTTCGGACATGCTTCTAAGTCTGATTGTGTAACCTTTACTATGATAATTTGA GTTTCTTTGTCTGTAAGTTGCTCTTACTTTGCTAAATACCAGGAAAGCCAGGGGAACTGGATTACAGAAATCATTGAGTG TTTATCTCCCACTCTTGTTCTTGACTATAAAAGAACACTGGTTTGGTGCCAAAAGAACCACTGAACCTCATGCAATTGTT CACTTCAAAAATTATTGAAGTTTATGAGACATCAACGAATGCTATTGCTCCCCAGTCCCCACTTATTTGCCTCTGCTTAA ACTGTCCTGCAGTTCATTTTTACTTTGTTGTGCATGGTTCATTATGTTTGCATGGCGCCCCTACTTTGTTGCTCTAGTTT TTCCCGCATCTGAGTTATTTTGGTGTTTTGGTTTAGTTGCGCTCTCTCACATCTGGCAAATAAGAAAAAATGTGCTGACG AAGAGTGTGTTGTTTCTTTTTGGTTTTAGATGGTTTTGATTGTCTTCCAAAAGGGAACCCGTGACCTGCATTTAGCTCCC TTTTCCTTCTATTATCTTACTTTTGTTTGTTTTTCTTTCTGTATTATCATTGTCTTTAGCACTTTAATCATTCAGATTGT TCTTTTGTCTTTCTTTTTTCATCATTACTAATGTTCTTATTCATGTCATTAGCACTAGAAGTTCACGGTTCTTGAAAATC TTAAAAAGAGCTAATTTTTATTATTGTTTTTGGTTTATCAATATTATTTCAAATTGTGGATTCGATCTCTCCTTGTACTT TTCATACATGAATAAGTTAGATTGACACCTAAAGTGGGGGTGGACACCCAAAGAAGGAGAAATGAAGAGAAAAGACCAAA GAAGGAGAAATGAAGAGAAAAGAGAACGTAGTTAGAGATAAAATGAAAATTATGATGTATACAAGGTGTCGACATTATTT GTGTGTCTGAAAAATGAGATTGTTTTGATACATACCAAGCCAATTTTAAGTTATATTTATTTTGTTACTTGTGTATGTCT TCTCTTTTACTCTGCAATATTTGTTACTTTGAATTTGTTCACCATCCAGCACAGTGTTGATATTTTCTTTAGTAGGTTTT CCTATCTTGCTTATATCTATGACACATACATTACACAATACTTTCTTCTACGATACTGTGCTCTTTTGTTGCATATATCT TTTTGTTATTGTTCTGGTTTGCCATTGTGAGGGAGAGTGGCTTAAGGTTCATGTGCTAATATATGTCCGTGGTTTCTCCT GTTGAAACATCCGTGTTCAAATCTCCATTTTTCCTCCTCCATCTCGTATATATTAAATGTGATATCAATAAGTTAAGAGA TGAGGCTTTCTATGTAGTAGTACCTTCTAAGCCAAACCTTATACATAATTTTTTGCAGCCTCCGCGCTTCCTTTGTTATG TGAAAGGTGATTCCTCATATGGGTTTTGTGTGGGAGTTGGGTTTGGGGCCCTCTATGGGGCTCCCCGCCCCACTTAAAGT GGGGAAATTACAGGAACGTCCCCCTTTAATAGAATATGGAAGCAACATTTCCGTATTCAATACGGAAGTCTTATATCCGT
CDS sequence (LotjaGi6g1v0248400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACACGGCAGCGGTTACTACCGTCCTCTTCCGACGACTCACTCCACGCGCCGCCGCTTCCACCTCTTCCGTTCGA CCTTGGTGTGGAAATCCTATGCAGGCTCTCGGTGAAATCGCTGTTGCAACTCCGCTGCGTTTGTAAGTCCTGGAAAACCC TAATCTCTGATCCCAAATTCGCCAAACACCACCTCCTCCGCTCTTCCCCGACGGACTTCACCCGCCACCGCCTCATCTTA GGCTACAACATCCTCCCAAACGACAGATTCAAATTCCTTCTCAAGGATTACCCGCTCCTCTCCGTTTTCAATGCCGCCAT GCCTGCACCCGCCACAGAGCTAGGTTACCCTCTTCGTGACAACTTCAATTTGATCATGGACTCTTGCGACGGCATCGTCC TCGTCTGCGCCAATTACAAGAGATGTATTGTTCTATGGAACCCTTCCACTCGGAGATTCAAAGAGTTGCCGCGTTTGGAA ATTCCAGAGTCAGAAGTAGAAGGTGCTAGTACTTTCATAACATATGGGTTTGGTTATGATAATCTTGCTGATAGTTACAA AGTAGTTGCAGTTTTCTACTATGAAACTGATACTGGGGGTTACAGAAAAAACAAAACTAATTTTGAGTTTTACAAAACAC AAGTGAAGGTTCATACTTTAGGTACTCATTCTTGGAGGGAGATTCAAGAGTTTCCTTCTTGTGTCCCTTTTACTGGAGCA GGAAGATTTGTGAGTGGCACTGTTAATTGGTTGGTTTCTGATGAGTCCAACTGGTTTATTAATTCTCTTGATTTGGGGAA GGAGAGTTATCAAAAACTTTTGCCTCCTAATGATGGAAGTGAGCCTGAGAATTATTTGGGGGTGTTGAGGGATTGCTTGT GCGTCCTGTGTGGAGATTCTAAGGTTTGGAATGTTTGGCTTATGATGGAGTATGGAAATCAAAAGTCTTGGACTAAACTA TTCAGTGTTGCCACCGAACTATTCCCCTATTACAAGGGACAGGGACTTGGTGCAATTCATATTTCTGAGGATGATCAAGT ACTGGTGGTGCAGTTCTGTTCAGAGTTATTTCTTTACAATTCCAAAGACGGCACTTTGAAAAGTCTCCAAATACAAATTC CCGATGCTTGTATTTCTATGGTCTCATGGGTCTATGTAGAAAGTTTGGTATCACCTTGCTTTTGA
Protein sequence (LotjaGi6g1v0248400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATRQRLLPSSSDDSLHAPPLPPLPFDLGVEILCRLSVKSLLQLRCVCKSWKTLISDPKFAKHHLLRSSPTDFTRHRLIL GYNILPNDRFKFLLKDYPLLSVFNAAMPAPATELGYPLRDNFNLIMDSCDGIVLVCANYKRCIVLWNPSTRRFKELPRLE IPESEVEGASTFITYGFGYDNLADSYKVVAVFYYETDTGGYRKNKTNFEFYKTQVKVHTLGTHSWREIQEFPSCVPFTGA GRFVSGTVNWLVSDESNWFINSLDLGKESYQKLLPPNDGSEPENYLGVLRDCLCVLCGDSKVWNVWLMMEYGNQKSWTKL FSVATELFPYYKGQGLGAIHISEDDQVLVVQFCSELFLYNSKDGTLKSLQIQIPDACISMVSWVYVESLVSPCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 89 | 84 | 7.6E-10 | – | |
| SUPERFAMILY | 16 | 151 | 136 | 5.36E-17 | ||
| ProSiteProfiles | 18 | 64 | 47 | 10.08 | ||
| Pfam | 21 | 63 | 43 | 3.6E-9 | ||
| SMART | 24 | 64 | 41 | 1.0E-8 | ||
| PANTHER | 29 | 373 | 345 | 1.3E-62 | – | |
| PANTHER | 29 | 373 | 345 | 1.3E-62 | – | |
| TIGRFAM | 127 | 361 | 235 | 1.1E-33 | ||
| Pfam | 244 | 388 | 145 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0248400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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