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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0252600 |
| Transcript ID | LotjaGi6g1v0252600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT4G18180.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q39766|PGLR_GOSBA Polygalacturonase; TrEMBL-Plants: tr|A0A072VG89|A0A072VG89_MEDTR Polygalacturonase; Found in the gene: LotjaGi6g1v0252600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56499426..56502352) extracted from Lotus japonicus Gifu genome v1.2.
ACCATTTGTTTTACCAGGAAACAAAGTATGAAATACATAACCATAGAAAAGAAGGTTAATTTTTCTCATAGCCTCCCCAG GAGGCCTCTAACTAATAATTAAAAAAAAGTTGAATAAAAAATACAGGTATTATAGAAAGAAAAAGAAGCTGAATAAAAGA AATGGCCACTGCAAAGAGAGCTGCTGTTCTAATTTTGTGGTTTGCACTGGCATATTGTGTTGATGCTGGTCCAAGAAAAG GGCCACTTGTTGGTCCTGATATCTACAAAGGTAAAAATGTTGCAAAGGATATCCTTGCTCCTGGAGAGAAAATAGTTAAT GTCATGAGTTTTGGAGCCAAACCTGATGGCAAATTCGACTGCACTCAGGTAGTTTTTGGGATCATATCTTTTGGTTAATC ATGATGGTTCTGCTTTAACATGAATTTTAGCTTTAAGGCCATGTGCTGCTCAGAATAAAAACACTAAGAATATTTATAAA TTGCCTGTTTATTCTCTGTTCACAAATTTGAAGGTATGTCATGCATACATCATTGACAATTTTTATTCGATACAAGAAAT ATACTTTGGATTCGGGTTCCCTGCAATGAAAGATAGCCTGCATTCTCACAATCACACAATTTGAGTCGTCCGGTCAAGAT CGGTCGGTTCGTACATTTCATCACGATCTGACAGTAGATTTAAATTTAAAATCTGAGCTGATCCATCTTGATCCAATGGC TAAGATTTGCACGAATGTAGGGATTCCCTGACTGCAGCCAGTCCATTTCATTATACTTCATATAAAACCTTTTGAAGATA AGAAGATCAAGTTGGATTTTACTGTGAATGTGTTGAATTTTTTTACAAGATGTTAATTATCACATTGAAGCAGTTTGAAT GCCAATATTCATCTTTGGCCATCATCACAATGAATCAACCCCAAAATGATAAATACAGAAGATAATCCTTGGAAAAAAAA TACATTTGTCATTTGACAGTTCATCCAACACAGGCCTTATTGGTAACTTATGCCTGCAGGCTTTCATGGATGCATGGAGA GCAGCATGCAAGTCCAAAGTGCAAGCCAGGCTTCTGATCCCTGTGGGAAGATTTGTGGTTTCTTCAATGTTTTTCGCAGG GCCATGCTTGACTCCAGGGCCCTTAACAGTCCAAGTTGTAGGCACTGTTGTGGCCACAACAGATATCAGTGAATATGAGA ATGGAGAATGGCTCATGTTTCAGGAAATCGCTGGCCTAAAAATTATTGGTGGAGGTACTTTTGATGGAAGAGGAAAGGCT TCATGGTCAGAAACTGAGAACTGTGAAACAAACCCAAGCTCCTCATGCGTCAGGGCCCCTAGTGTGAGTTAATGCCTTTC TATCTTATAATTTGAACCTTTTGCATTAACATTCAGCATTATGTGAGATTTGTTGTGCTTTTTGGGAATGCAGAGCCTTT ATTTCAGCAGAGTTACCAATGGAATTATACAGAACATCAATTCCTTAGACCCCAAAGGCTTTCACATATTTGTCACTAAC TGTGCAAACATTAGACTTAGATTGCTTAAGCTCAATGCTCCAGGTACCAGCCCCAACACTGATGGCATTCACTTGAGCCA CTCCACCAATATAAAAATATCGAGAAGTAGCGTTCAAACCGGAGATGATTGTGTCTCCATGATACAAGGAATCAACAATG TTACCATCAATAGACTACAGTGTGGTCCTGGACATGGTATTAGGTAATGCCAAATTGCTGGCTAATTGATTCATGAAAGA TATAATTTCACCTTCATCCAAGATTATTTTCTGCTCAATCAATTTATATTGTAGTTTAATTTTATGAAAAACATTGTAAT GTCTTAACATGATTATTATGTGTGATGCAATATCAAAATCAGTTAAAAAGTTACTAGATAGTATAAGTCTGAAAATCTTT ACATGGAAATGTTCAAGATTTGAATTGGCTATGTTCCTTAATTTTCTATGTTCTTTGAATATGCATGACAGTGTTGGAAG TCTTGGAAAGTACCCGGATGAGCTAGAAGTGAAAGACGTTCGGGTCCAAAACTCGAAATTGTCTGGCACAACAAATGGCC TCAGAATCAAGTCATGGCCAGATAAGTATCCAGGGGCAGCATCAGATATAAGCTTCAGTGGCATTACTATGGAAAATGTT AAAAATCCTATCATCATTGACCAAGAGTACCAATGCTCTCCAAACTGCAATAAGAAGGTTGGAGTGTTTATATTTTTTTT CCCTTTTCGAGCTTGAAATTGAAGCATGCTAATTTGGACATTTCAATTTCTCTCTATGCAGCCTTCACTAGTAAAGATCA GAAATATTCTCTTTTCAAACATAAAGGGAACCACTATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCA TGCCAAAATGTTAAACTTCAGAACATAGACCTGAAGCTTGGAGCCAGCCCTGGTGGCTCTAGATGTGCCAACATTAAACC TCTTTATATCGGCTTGCAACGACCACCGGCATGCCCATAGTTGTCTGATTTGAAAAGAATTATGCATCTCATTGCTCTGG CAATAAAGTGGAAGGAATGAAAGGTAAGGTTTTGGACAGTTGGACCTAATGAGGCGAACATGTGCAATGGTTTTGAAGGA TGGTTTTTTGAATCCTAACTTATGATGCTGAACCCAAACCTGCTTGAAGCCATATTTTTTACTTAGCTGAATATATATTA GAATCAGCTTTGTGTATAGAAAGCCAAGAGTTGTATATAAAATAATAGTAGTGCTTTGGGATTTATTTTTTTCATCCTTA GTTACAGTGTAAACAAAAGTAGGGTTAAAATATTCATCAATTGTAATTATGAAGTAGTTTTCCATTTCAATTATCTCTTG TTTTTTTACATAAAGTATGAAGAAACCACAAATTTCCCCTCATCTCA
CDS sequence (LotjaGi6g1v0252600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACTGCAAAGAGAGCTGCTGTTCTAATTTTGTGGTTTGCACTGGCATATTGTGTTGATGCTGGTCCAAGAAAAGG GCCACTTGTTGGTCCTGATATCTACAAAGGTAAAAATGTTGCAAAGGATATCCTTGCTCCTGGAGAGAAAATAGTTAATG TCATGAGTTTTGGAGCCAAACCTGATGGCAAATTCGACTGCACTCAGGCTTTCATGGATGCATGGAGAGCAGCATGCAAG TCCAAAGTGCAAGCCAGGCTTCTGATCCCTGTGGGAAGATTTGTGGTTTCTTCAATGTTTTTCGCAGGGCCATGCTTGAC TCCAGGGCCCTTAACAGTCCAAGTTGTAGGCACTGTTGTGGCCACAACAGATATCAGTGAATATGAGAATGGAGAATGGC TCATGTTTCAGGAAATCGCTGGCCTAAAAATTATTGGTGGAGGTACTTTTGATGGAAGAGGAAAGGCTTCATGGTCAGAA ACTGAGAACTGTGAAACAAACCCAAGCTCCTCATGCGTCAGGGCCCCTAGTAGCCTTTATTTCAGCAGAGTTACCAATGG AATTATACAGAACATCAATTCCTTAGACCCCAAAGGCTTTCACATATTTGTCACTAACTGTGCAAACATTAGACTTAGAT TGCTTAAGCTCAATGCTCCAGGTACCAGCCCCAACACTGATGGCATTCACTTGAGCCACTCCACCAATATAAAAATATCG AGAAGTAGCGTTCAAACCGGAGATGATTGTGTCTCCATGATACAAGGAATCAACAATGTTACCATCAATAGACTACAGTG TGGTCCTGGACATGGTATTAGTGTTGGAAGTCTTGGAAAGTACCCGGATGAGCTAGAAGTGAAAGACGTTCGGGTCCAAA ACTCGAAATTGTCTGGCACAACAAATGGCCTCAGAATCAAGTCATGGCCAGATAAGTATCCAGGGGCAGCATCAGATATA AGCTTCAGTGGCATTACTATGGAAAATGTTAAAAATCCTATCATCATTGACCAAGAGTACCAATGCTCTCCAAACTGCAA TAAGAAGCCTTCACTAGTAAAGATCAGAAATATTCTCTTTTCAAACATAAAGGGAACCACTATTTCACCAATTGCAGTGG ATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAAATGTTAAACTTCAGAACATAGACCTGAAGCTTGGAGCCAGCCCTGGT GGCTCTAGATGTGCCAACATTAAACCTCTTTATATCGGCTTGCAACGACCACCGGCATGCCCATAG
Protein sequence (LotjaGi6g1v0252600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAKRAAVLILWFALAYCVDAGPRKGPLVGPDIYKGKNVAKDILAPGEKIVNVMSFGAKPDGKFDCTQAFMDAWRAACK SKVQARLLIPVGRFVVSSMFFAGPCLTPGPLTVQVVGTVVATTDISEYENGEWLMFQEIAGLKIIGGGTFDGRGKASWSE TENCETNPSSSCVRAPSSLYFSRVTNGIIQNINSLDPKGFHIFVTNCANIRLRLLKLNAPGTSPNTDGIHLSHSTNIKIS RSSVQTGDDCVSMIQGINNVTINRLQCGPGHGISVGSLGKYPDELEVKDVRVQNSKLSGTTNGLRIKSWPDKYPGAASDI SFSGITMENVKNPIIIDQEYQCSPNCNKKPSLVKIRNILFSNIKGTTISPIAVDLRCSKQFPCQNVKLQNIDLKLGASPG GSRCANIKPLYIGLQRPPACP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 2 | 420 | 419 | 1.2E-177 | – | |
| PANTHER | 2 | 420 | 419 | 1.2E-177 | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 421 | 399 | - | – | |
| Gene3D | 39 | 414 | 376 | 9.3E-109 | ||
| SUPERFAMILY | 48 | 420 | 373 | 4.3E-108 | ||
| Pfam | 79 | 408 | 330 | 1.8E-89 | ||
| ProSitePatterns | 264 | 277 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0252600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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