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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0256500 |
| Transcript ID | LotjaGi6g1v0256500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT3G16920.2 chitinase-like protein; Swiss-Prot: sp|Q9LSP9|CTL2_ARATH Chitinase-like protein 2; TrEMBL-Plants: tr|G7IMU8|G7IMU8_MEDTR Chitinase; Found in the gene: LotjaGi6g1v0256500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56938552..56941056) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAAACATGAATGAGAATGGAAGCAAAAGCTCCACCTATTCCACATCTGAAAATCTCTTCCTCCTAATAAGTTAGAAA CTCACTTTCAATCCCTTTCACTCCACATTACACACTCTCTAGAACCCTCTTTTTAAATGTCACAAATATCATTCCTCTCT ACCAGCAACACATAGATCACACAACAGGACAAATTCAAGTAGAGAAAAAAAGAAGAAGATGAAGATGAATCCCAAATGGG TTTTTCTTTTGAGTTTTGCAGCAATGTTAGTAATTGGGAATGGTCAATCAAAAGTGGAGCCACTGGTAAAGAAAGTGAAG GGGAAGAAGCTATGTGACAAAGGGTGGGAATGTAAAGGATGGTCAGTTTATTGCTGCAATGAGACTATTACTGATTTCTT TGAGACCTACCAGTTTGAGAACCTCTTCTCAAAAAGGAATGCACCAGTGGCACATGCTGTTGGGTTCTGGGACTACAAAT CTTTCATCTCTGCTGCAGCACTTTACCAGCCTCTAGGATTTGGAACCTCTGGAGGAAAGCACGGTGGACAAAAGGAGCTT GCAGCTTTCCTTGGTCATGTGGGTAGCAAGACCTCTTGTAAGTGCCAACATTTCATGTTTTCTTGTTCATTATGACCTCA GTTACATATACATGATCTGAATGTCTTAAACATTTCATGTTTGATGCAGCTAGGTGTCTTGAGTGATTAGTCATATAGAC AATTTGAATCACTTAATGATTTGATCTTCAGTTTATTCTAGACATAGAATAAAAGTATATCTGGCTGTATTAGAAAAAGA CCTAACTTGTTTTGTGTAAGGCAAAAATAATGGGTTTATATTGATTACACACTAAGGAAAAAGGATGATTTACCTTGTCA CCTAAGATGTTGTTTAGATTGTTGGAGTGAATGGAGATTTGACTAAAGGTCCTGAAATTGCATAGTAACTAATTGTTGAA AAATTATTTCAGGTGGTTATGGGGTAGCTACTGGAGGACCCTTTGCCTGGGGCTTATGCTACAATAAGGAATTGAGTCCT GATCAATTCTACTGTGATGACTATTACAAGTTAACCTATCCATGCTCCCCTGGCGCAGCATATTATGGTCGTGGTGCCAT ACCAATTTACTGGTATTCATATTTAGATCAGCTGATTTTTTCCCTGAATCAACTATGGCATAAAAAAACTTGATATAAGC TTCTTCCCACAATTGATTTTATCTTCAGAATCAGTACTTATAGAAGAATTTCCAAACATGCCCTTAGAGTATCATTATCT CTATTTGCCTTTTTTCTTATAACTTTTGTTGATTTGAGTGGTTGTTTTTTGGTTTTATTGGAATTTAATTGATTTCCTAA GAAACAAATGCTTTTAATATAAGTCTTTACCAATCTGTTAAAAAGTGGTTAGATAGAAACATCAATTGTAGGTGGAGATA ACTTATAATTCCAGGAACATAATTCTTGCACTCTCTTCATAGGTGGCCAAATTTTTTTATGTGCAGATTTCATTACTAAA CTCTTAGACAGAAGAAATTAATATTTTAACAAATTATGATCAAATTCCTTGTGTTTTCTTTCATGATGTAACAGGAACTA CAACTATGGAAAGACTGGGGAGGCCTTGAAGGTGGATCTATTGAACCATCCAGAATACATAGAACAGAATGCTACCCTGG CCTTCCAAGCTGCAATCTGGAAGTGGATGACCCCACCAGAGAAGCACCTTCCTTCAGCACATGATGTATTTGTTGGAAAC TGGAAACCCACCAAGAATGACACACTGTCCAAGAGGGTTCCTGGGTTTGGTGCCACCATCAATGTGCTGTATGGGGATCA ATTGTGTGGTCAGGGATCTGATAATGAGGGCATGAACAACATCATCTCACACTATCTCTACTACCTTGATCTCATGGGTG TTGGCAGAGAAGAGGCAGGGCCTAATGAAGTGCTCTCTTGTGCTGAGCAAGAGGCTTTTAAGCCCTCTGGATCACCATTT TCTTCAACAACTTGAGAGTTTTACATGATTGAATCCTGAAAAATCTAATAAAGGAGGGCATGTAGAACAATTCAACTACT TTGCCTTTCACATGAGAATGAATTGAGCTTGGATTGGACACTCATTGTTACTGTGTATAGTATAGATTATTGTGCTGCTA TATATCTTGGCTTTTGCTGTTTTCTTTCCATGATCCTGTGTAATTTGGATATAATTTTGGTATCAATGTATAAATTGAAT ATTTGATCATTAAGAAGTCTCAATATTTTTGTTGATATTAGTGTGAGTGCAATAGTACAGTGTTTCATTCAAATAAGAAA AATGTTACCCGCGACATTTAATTAATACAAGATGCCTTGGATTCCAAGAGTTTTGAGAGCTTGCTTCGATCCAGGGCACA AGTGCACTGAACATTACTCCCTCCATTTCAGAAAGAAGTTTGTAGTTTAAGGTTGTGACACAAAGAGTAAGAAAACAATT ATTGATAGTATAATTTGACTAGATT
CDS sequence (LotjaGi6g1v0256500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGAATCCCAAATGGGTTTTTCTTTTGAGTTTTGCAGCAATGTTAGTAATTGGGAATGGTCAATCAAAAGTGGA GCCACTGGTAAAGAAAGTGAAGGGGAAGAAGCTATGTGACAAAGGGTGGGAATGTAAAGGATGGTCAGTTTATTGCTGCA ATGAGACTATTACTGATTTCTTTGAGACCTACCAGTTTGAGAACCTCTTCTCAAAAAGGAATGCACCAGTGGCACATGCT GTTGGGTTCTGGGACTACAAATCTTTCATCTCTGCTGCAGCACTTTACCAGCCTCTAGGATTTGGAACCTCTGGAGGAAA GCACGGTGGACAAAAGGAGCTTGCAGCTTTCCTTGGTCATGTGGGTAGCAAGACCTCTTGTGGTTATGGGGTAGCTACTG GAGGACCCTTTGCCTGGGGCTTATGCTACAATAAGGAATTGAGTCCTGATCAATTCTACTGTGATGACTATTACAAGTTA ACCTATCCATGCTCCCCTGGCGCAGCATATTATGGTCGTGGTGCCATACCAATTTACTGGAACTACAACTATGGAAAGAC TGGGGAGGCCTTGAAGGTGGATCTATTGAACCATCCAGAATACATAGAACAGAATGCTACCCTGGCCTTCCAAGCTGCAA TCTGGAAGTGGATGACCCCACCAGAGAAGCACCTTCCTTCAGCACATGATGTATTTGTTGGAAACTGGAAACCCACCAAG AATGACACACTGTCCAAGAGGGTTCCTGGGTTTGGTGCCACCATCAATGTGCTGTATGGGGATCAATTGTGTGGTCAGGG ATCTGATAATGAGGGCATGAACAACATCATCTCACACTATCTCTACTACCTTGATCTCATGGGTGTTGGCAGAGAAGAGG CAGGGCCTAATGAAGTGCTCTCTTGTGCTGAGCAAGAGGCTTTTAAGCCCTCTGGATCACCATTTTCTTCAACAACTTGA
Protein sequence (LotjaGi6g1v0256500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMNPKWVFLLSFAAMLVIGNGQSKVEPLVKKVKGKKLCDKGWECKGWSVYCCNETITDFFETYQFENLFSKRNAPVAHA VGFWDYKSFISAAALYQPLGFGTSGGKHGGQKELAAFLGHVGSKTSCGYGVATGGPFAWGLCYNKELSPDQFYCDDYYKL TYPCSPGAAYYGRGAIPIYWNYNYGKTGEALKVDLLNHPEYIEQNATLAFQAAIWKWMTPPEKHLPSAHDVFVGNWKPTK NDTLSKRVPGFGATINVLYGDQLCGQGSDNEGMNNIISHYLYYLDLMGVGREEAGPNEVLSCAEQEAFKPSGSPFSSTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PIRSF | 1 | 309 | 309 | 8.4E-76 | ||
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 10 | 300 | 291 | 2.5E-159 | – | |
| PANTHER | 10 | 300 | 291 | 2.5E-159 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 319 | 295 | - | – | |
| SUPERFAMILY | 57 | 308 | 252 | 2.45E-73 | ||
| Pfam | 64 | 292 | 229 | 6.6E-63 | ||
| CDD | 65 | 302 | 238 | 6.4519E-76 | – | |
| Gene3D | 66 | 308 | 243 | 5.1E-86 | – | |
| Gene3D | 145 | 204 | 60 | 5.1E-86 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi6g1v0256500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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